Wall clock time and date at job start Tue Mar 31 2020 06:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47165 * 2 1 4 4 C 1.50701 * 109.47094 * 240.00263 * 2 1 3 5 5 H 1.08004 * 119.99238 * 239.99767 * 4 2 1 6 6 C 1.37876 * 120.00286 * 59.99864 * 4 2 1 7 7 N 1.31514 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99943 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47434 * 59.99946 * 8 6 4 10 10 H 1.48497 * 109.47176 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47182 * 299.99993 * 8 6 4 12 12 O 1.45196 * 109.47190 * 120.00062 * 2 1 3 13 13 C 1.34754 * 116.99814 * 270.00293 * 12 2 1 14 14 O 1.21498 * 120.00096 * 359.97438 * 13 12 2 15 15 C 1.47471 * 119.99607 * 179.97438 * 13 12 2 16 16 C 1.39802 * 120.27529 * 359.72733 * 15 13 12 17 17 C 1.37447 * 120.20236 * 179.97438 * 16 15 13 18 18 C 1.39614 * 120.42971 * 0.55547 * 17 16 15 19 19 C 1.39202 * 119.11219 * 359.39482 * 18 17 16 20 20 C 1.37287 * 120.94084 * 0.43385 * 19 18 17 21 21 C 1.51674 * 106.99285 * 180.70178 * 19 18 17 22 22 C 1.52998 * 110.94976 * 133.64743 * 21 19 18 23 23 C 1.53002 * 110.94570 * 257.31027 * 21 19 18 24 24 C 1.54701 * 101.89313 * 15.49119 * 21 19 18 25 25 O 1.35989 * 129.71008 * 179.08157 * 18 17 16 26 26 H 1.09008 * 109.46958 * 60.00304 * 1 2 3 27 27 H 1.08999 * 109.46730 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47240 * 300.00043 * 1 2 3 29 29 H 0.96992 * 119.99927 * 179.97438 * 7 6 4 30 30 H 1.08008 * 119.90085 * 0.16652 * 16 15 13 31 31 H 1.07989 * 119.78784 * 180.32559 * 17 16 15 32 32 H 1.08002 * 120.06859 * 179.75847 * 20 19 18 33 33 H 1.09000 * 109.47391 * 59.99502 * 22 21 19 34 34 H 1.08997 * 109.47299 * 180.02562 * 22 21 19 35 35 H 1.09003 * 109.46592 * 299.99843 * 22 21 19 36 36 H 1.09005 * 109.47293 * 59.99246 * 23 21 19 37 37 H 1.08999 * 109.47273 * 179.97438 * 23 21 19 38 38 H 1.09002 * 109.47172 * 299.99862 * 23 21 19 39 39 H 1.09004 * 110.74234 * 92.96722 * 24 21 19 40 40 H 1.09007 * 110.74622 * 216.11102 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5197 -4.0082 10 1 1.8280 -0.4192 -5.2204 11 1 3.8076 -1.1189 -4.0077 12 8 2.0140 -0.6845 1.1855 13 6 2.2179 0.0670 2.2854 14 8 1.9977 1.2614 2.2544 15 6 2.7083 -0.5606 3.5265 16 6 2.9581 -1.9354 3.5701 17 6 3.4156 -2.5187 4.7276 18 6 3.6243 -1.7482 5.8730 19 6 3.3750 -0.3796 5.8234 20 6 2.9212 0.2139 4.6716 21 6 3.7053 0.1811 7.1934 22 6 4.5484 1.4523 7.0755 23 6 2.4309 0.4461 7.9977 24 6 4.5260 -0.9708 7.8200 25 8 4.0503 -2.1254 7.1081 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7096 1.1618 -3.4844 30 1 2.7940 -2.5406 2.6907 31 1 3.6113 -3.5804 4.7523 32 1 2.7287 1.2764 4.6499 33 1 3.9950 2.2047 6.5135 34 1 4.7719 1.8339 8.0717 35 1 5.4797 1.2238 6.5571 36 1 1.8807 -0.4863 8.1244 37 1 2.6956 0.8473 8.9760 38 1 1.8086 1.1657 7.4657 39 1 5.5922 -0.8233 7.6478 40 1 4.3172 -1.0581 8.8863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810583427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:27 Heat of formation + Delta-G solvation = -103.386084 kcal Electronic energy + Delta-G solvation = -22799.249960 eV Core-core repulsion = 19351.203659 eV Total energy + Delta-G solvation = -3448.046301 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57934 -39.48652 -37.25844 -35.58928 -35.39167 -33.24356 -30.59660 -30.33101 -29.28364 -27.65772 -26.81327 -25.32033 -24.23566 -22.85872 -21.43771 -20.16689 -19.50478 -17.51228 -17.20496 -16.76060 -16.26633 -15.88583 -15.71453 -14.92918 -14.71061 -14.41405 -14.22978 -13.81217 -13.72924 -13.20439 -13.04852 -12.93842 -12.65423 -12.33846 -12.14846 -11.97040 -11.75664 -11.67697 -11.25390 -11.20717 -11.04301 -10.91293 -10.82733 -10.62484 -10.38059 -10.27459 -9.72178 -9.52821 -9.01024 -8.90622 -8.48601 -8.26094 -6.17545 -4.24550 0.87483 1.28924 2.92411 3.12123 3.27209 3.30490 3.32693 3.61304 3.91931 4.01572 4.28194 4.37283 4.57086 4.66554 4.87592 5.08702 5.12019 5.15474 5.23167 5.28673 5.32734 5.43868 5.49559 5.53015 5.57691 5.63171 5.86886 5.95461 6.00122 6.19864 6.26498 6.44527 6.45044 6.66157 6.90935 6.92532 7.00631 7.16794 7.59998 7.73532 7.93748 8.14505 8.63465 8.88450 9.40752 10.89972 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.003390 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.236799 B = 8258.516191 C = 8674.616394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.521 4.521 5 H 0.069 0.931 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.351 6.351 13 C 0.500 3.500 14 O -0.520 6.520 15 C -0.142 4.142 16 C -0.025 4.025 17 C -0.152 4.152 18 C 0.131 3.869 19 C -0.182 4.182 20 C -0.006 4.006 21 C -0.050 4.050 22 C -0.138 4.138 23 C -0.136 4.136 24 C 0.057 3.943 25 O -0.301 6.301 26 H 0.099 0.901 27 H 0.037 0.963 28 H 0.016 0.984 29 H 0.267 0.733 30 H 0.151 0.849 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.079 0.921 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.884 -2.938 20.631 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.559 4.559 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.200 1.200 12 O -0.267 6.267 13 C 0.345 3.655 14 O -0.412 6.412 15 C -0.143 4.143 16 C -0.043 4.043 17 C -0.171 4.171 18 C 0.085 3.915 19 C -0.183 4.183 20 C -0.025 4.025 21 C -0.050 4.050 22 C -0.195 4.195 23 C -0.193 4.193 24 C -0.018 4.018 25 O -0.214 6.214 26 H 0.118 0.882 27 H 0.056 0.944 28 H 0.035 0.965 29 H 0.077 0.923 30 H 0.169 0.831 31 H 0.153 0.847 32 H 0.155 0.845 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.097 0.903 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 5.724 -2.687 20.528 21.480 hybrid contribution 0.199 -0.109 -0.864 0.893 sum 5.922 -2.796 19.664 20.726 Atomic orbital electron populations 1.22166 0.97524 1.00162 1.01429 1.20655 0.91404 0.93976 0.77581 0.93491 1.20988 1.32567 1.13527 0.88864 0.91304 1.24884 0.94919 0.95096 0.99054 1.69889 1.36032 1.22515 1.24288 0.86323 0.79222 0.79532 0.80991 1.19916 1.21051 1.19976 1.86533 1.75888 1.43201 1.21105 1.20809 0.74932 0.85203 0.84553 1.90763 1.49292 1.16284 1.84865 1.19229 1.08019 0.94180 0.92901 1.21316 0.91800 0.93771 0.97417 1.20227 1.06725 1.00511 0.89618 1.19864 0.93215 0.92813 0.85622 1.20486 1.07979 0.94168 0.95633 1.20298 0.92659 1.00325 0.89170 1.20775 0.96678 0.96199 0.91399 1.21793 0.99597 0.95864 1.02239 1.21803 0.95806 1.02457 0.99208 1.24016 0.98343 0.82270 0.97127 1.86774 1.77339 1.33971 1.23350 0.88220 0.94383 0.96486 0.92336 0.83095 0.84735 0.84520 0.91430 0.91863 0.91977 0.92070 0.91819 0.91564 0.90258 0.87537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.98 9.33 37.16 0.35 -3.64 16 2 C 0.22 5.87 2.56 -27.88 -0.07 5.80 16 3 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 4 C -0.52 -14.68 8.90 -34.44 -0.31 -14.99 16 5 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.91 21.10 29.54 -169.99 -5.02 16.08 16 9 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 12 O -0.35 -8.46 9.12 -40.64 -0.37 -8.83 16 13 C 0.50 10.96 7.87 34.49 0.27 11.23 16 14 O -0.52 -12.64 15.62 -19.26 -0.30 -12.94 16 15 C -0.14 -2.45 5.88 -104.94 -0.62 -3.07 16 16 C -0.02 -0.37 9.59 -39.29 -0.38 -0.75 16 17 C -0.15 -1.96 10.05 -39.36 -0.40 -2.36 16 18 C 0.13 1.69 7.05 -38.71 -0.27 1.42 16 19 C -0.18 -2.32 5.04 -104.13 -0.52 -2.84 16 20 C -0.01 -0.09 9.46 -39.32 -0.37 -0.47 16 21 C -0.05 -0.47 1.03 -154.29 -0.16 -0.63 16 22 C -0.14 -1.11 8.55 37.16 0.32 -0.79 16 23 C -0.14 -1.13 8.61 37.16 0.32 -0.81 16 24 C 0.06 0.48 7.09 38.05 0.27 0.75 16 25 O -0.30 -3.53 11.09 -19.70 -0.22 -3.75 16 26 H 0.10 2.72 6.07 -51.92 -0.32 2.40 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.02 0.40 8.14 -51.94 -0.42 -0.03 16 29 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.15 2.18 7.61 -52.48 -0.40 1.78 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.14 2.03 7.66 -52.49 -0.40 1.62 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.51 8.07 -51.93 -0.42 0.09 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.58 7.86 -51.93 -0.41 0.17 16 40 H 0.11 0.64 7.93 -51.92 -0.41 0.23 16 LS Contribution 337.84 15.07 5.09 5.09 Total: -1.00 -31.34 337.84 -7.51 -38.85 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.65 Total: -0.25 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: -1.66 Total: -9.50 kcal Atomic # 7 Polarization: -25.38 SS G_CDS: 0.63 Total: -24.75 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.89 Total: -25.53 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.34 -7.51 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.536 kcal (2) G-P(sol) polarization free energy of solvation -31.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds