Wall clock time and date at job start Tue Mar 31 2020 06:24:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47165 * 2 1 4 4 C 1.50701 * 109.47094 * 240.00263 * 2 1 3 5 5 H 1.08004 * 119.99238 * 239.99767 * 4 2 1 6 6 C 1.37876 * 120.00286 * 59.99864 * 4 2 1 7 7 N 1.31514 * 119.99938 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99943 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47434 * 59.99946 * 8 6 4 10 10 H 1.48497 * 109.47176 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47182 * 299.99993 * 8 6 4 12 12 O 1.45196 * 109.47190 * 120.00062 * 2 1 3 13 13 C 1.34754 * 116.99814 * 270.00293 * 12 2 1 14 14 O 1.21498 * 120.00096 * 359.97438 * 13 12 2 15 15 C 1.47471 * 119.99607 * 179.97438 * 13 12 2 16 16 C 1.39802 * 120.27529 * 359.72733 * 15 13 12 17 17 C 1.37447 * 120.20236 * 179.97438 * 16 15 13 18 18 C 1.39614 * 120.42971 * 0.55547 * 17 16 15 19 19 C 1.39202 * 119.11219 * 359.39482 * 18 17 16 20 20 C 1.37287 * 120.94084 * 0.43385 * 19 18 17 21 21 C 1.51674 * 106.99285 * 180.70178 * 19 18 17 22 22 C 1.52998 * 110.94976 * 133.64743 * 21 19 18 23 23 C 1.53002 * 110.94570 * 257.31027 * 21 19 18 24 24 C 1.54701 * 101.89313 * 15.49119 * 21 19 18 25 25 O 1.35989 * 129.71008 * 179.08157 * 18 17 16 26 26 H 1.09008 * 109.46958 * 60.00304 * 1 2 3 27 27 H 1.08999 * 109.46730 * 179.97438 * 1 2 3 28 28 H 1.08989 * 109.47240 * 300.00043 * 1 2 3 29 29 H 0.96992 * 119.99927 * 179.97438 * 7 6 4 30 30 H 1.08008 * 119.90085 * 0.16652 * 16 15 13 31 31 H 1.07989 * 119.78784 * 180.32559 * 17 16 15 32 32 H 1.08002 * 120.06859 * 179.75847 * 20 19 18 33 33 H 1.09000 * 109.47391 * 59.99502 * 22 21 19 34 34 H 1.08997 * 109.47299 * 180.02562 * 22 21 19 35 35 H 1.09003 * 109.46592 * 299.99843 * 22 21 19 36 36 H 1.09005 * 109.47293 * 59.99246 * 23 21 19 37 37 H 1.08999 * 109.47273 * 179.97438 * 23 21 19 38 38 H 1.09002 * 109.47172 * 299.99862 * 23 21 19 39 39 H 1.09004 * 110.74234 * 92.96722 * 24 21 19 40 40 H 1.09007 * 110.74622 * 216.11102 * 24 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3226 -1.1195 -4.0079 9 1 1.8282 -2.5197 -4.0082 10 1 1.8280 -0.4192 -5.2204 11 1 3.8076 -1.1189 -4.0077 12 8 2.0140 -0.6845 1.1855 13 6 2.2179 0.0670 2.2854 14 8 1.9977 1.2614 2.2544 15 6 2.7083 -0.5606 3.5265 16 6 2.9581 -1.9354 3.5701 17 6 3.4156 -2.5187 4.7276 18 6 3.6243 -1.7482 5.8730 19 6 3.3750 -0.3796 5.8234 20 6 2.9212 0.2139 4.6716 21 6 3.7053 0.1811 7.1934 22 6 4.5484 1.4523 7.0755 23 6 2.4309 0.4461 7.9977 24 6 4.5260 -0.9708 7.8200 25 8 4.0503 -2.1254 7.1081 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.7096 1.1618 -3.4844 30 1 2.7940 -2.5406 2.6907 31 1 3.6113 -3.5804 4.7523 32 1 2.7287 1.2764 4.6499 33 1 3.9950 2.2047 6.5135 34 1 4.7719 1.8339 8.0717 35 1 5.4797 1.2238 6.5571 36 1 1.8807 -0.4863 8.1244 37 1 2.6956 0.8473 8.9760 38 1 1.8086 1.1657 7.4657 39 1 5.5922 -0.8233 7.6478 40 1 4.3172 -1.0581 8.8863 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810583427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:27 Heat of formation + Delta-G solvation = -120.419772 kcal Electronic energy + Delta-G solvation = -22799.988596 eV Core-core repulsion = 19351.203659 eV Total energy + Delta-G solvation = -3448.784937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.53616 -41.22605 -38.50404 -37.44476 -36.20093 -35.33021 -32.08442 -31.55788 -30.93088 -28.29484 -27.54112 -27.46802 -25.65836 -23.90532 -23.19901 -21.57567 -20.73865 -19.05488 -18.60920 -18.19435 -17.64350 -17.19454 -16.98633 -16.71277 -16.52177 -15.43769 -15.28870 -14.90433 -14.72649 -14.63400 -14.26058 -13.99555 -13.88164 -13.82802 -13.68758 -13.23499 -13.06808 -12.93022 -12.82129 -12.75271 -12.39713 -12.38606 -12.17337 -11.93945 -11.79723 -11.62648 -11.55826 -11.49201 -11.01628 -10.60373 -10.09667 -9.35752 -8.29013 -6.46320 -0.38197 0.20058 1.42043 1.46423 1.50472 1.54420 1.90808 2.18593 2.41409 2.63180 3.01735 3.19773 3.47602 3.69633 3.79212 3.91551 4.01666 4.15690 4.30507 4.38474 4.50324 4.54134 4.60033 4.71737 4.73595 4.77267 4.80578 4.89084 4.92139 4.98016 5.05124 5.13866 5.16699 5.27648 5.28271 5.30242 5.37642 5.47043 5.60250 5.88139 6.00637 6.04446 6.58260 6.90879 7.25145 8.78908 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031304 B = 0.003390 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.236799 B = 8258.516191 C = 8674.616394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.217 3.783 3 H 0.007 0.993 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.262 1.262 10 H -0.277 1.277 11 H -0.268 1.268 12 O -0.355 6.355 13 C 0.496 3.504 14 O -0.556 6.556 15 C -0.171 4.171 16 C -0.024 4.024 17 C -0.147 4.147 18 C 0.139 3.861 19 C -0.182 4.182 20 C -0.009 4.009 21 C -0.050 4.050 22 C -0.137 4.137 23 C -0.134 4.134 24 C 0.054 3.946 25 O -0.304 6.304 26 H 0.083 0.917 27 H 0.047 0.953 28 H 0.021 0.979 29 H 0.271 0.729 30 H 0.151 0.849 31 H 0.163 0.837 32 H 0.129 0.871 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.054 0.946 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.095 0.905 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.194 -4.544 22.577 24.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.164 3.836 3 H 0.025 0.975 4 C -0.587 4.587 5 H 0.088 0.912 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.808 3.192 9 H -0.187 1.187 10 H -0.202 1.202 11 H -0.193 1.193 12 O -0.271 6.271 13 C 0.344 3.656 14 O -0.449 6.449 15 C -0.172 4.172 16 C -0.042 4.042 17 C -0.166 4.166 18 C 0.093 3.907 19 C -0.183 4.183 20 C -0.028 4.028 21 C -0.050 4.050 22 C -0.194 4.194 23 C -0.191 4.191 24 C -0.020 4.020 25 O -0.218 6.218 26 H 0.101 0.899 27 H 0.066 0.934 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.181 0.819 32 H 0.147 0.853 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.113 0.887 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 7.039 -4.299 22.508 23.972 hybrid contribution -0.161 0.416 -1.267 1.343 sum 6.878 -3.883 21.242 22.663 Atomic orbital electron populations 1.21993 0.96710 1.00514 1.00789 1.20392 0.92075 0.92138 0.78960 0.97515 1.21271 1.33576 1.14048 0.89784 0.91177 1.25858 0.94656 0.95658 1.02188 1.70014 1.36562 1.23653 1.25343 0.85201 0.78778 0.78655 0.76584 1.18667 1.20231 1.19305 1.86517 1.76293 1.43117 1.21152 1.21656 0.73938 0.84964 0.85055 1.90727 1.51089 1.17746 1.85367 1.19029 1.11334 0.95492 0.91394 1.21313 0.91857 0.92602 0.98444 1.20422 1.05559 1.01835 0.88763 1.20055 0.91812 0.92703 0.86166 1.20823 1.06457 0.94647 0.96376 1.20243 0.93124 0.99933 0.89460 1.20933 0.97612 0.97172 0.89331 1.21802 0.98931 0.94952 1.03702 1.21817 0.95014 1.01988 1.00327 1.24372 0.98949 0.80318 0.98344 1.86783 1.76919 1.35570 1.22494 0.89887 0.93364 0.95985 0.91937 0.83112 0.81937 0.85273 0.92679 0.89088 0.92263 0.92726 0.88935 0.92722 0.88666 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.59 9.33 71.98 0.67 -6.92 16 2 C 0.22 12.38 2.56 29.85 0.08 12.46 16 3 H 0.01 0.45 7.16 -2.39 -0.02 0.43 16 4 C -0.55 -31.72 8.90 25.60 0.23 -31.50 16 5 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -53.47 11.32 21.45 0.24 -53.23 16 8 Si 0.99 43.16 29.54 68.60 2.03 45.19 16 9 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 10 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 O -0.35 -17.91 9.12 -56.65 -0.52 -18.43 16 13 C 0.50 22.99 7.87 70.26 0.55 23.54 16 14 O -0.56 -28.82 15.62 19.84 0.31 -28.51 16 15 C -0.17 -6.11 5.88 -20.07 -0.12 -6.23 16 16 C -0.02 -0.71 9.59 22.46 0.22 -0.50 16 17 C -0.15 -3.54 10.05 22.42 0.23 -3.31 16 18 C 0.14 3.30 7.05 22.83 0.16 3.46 16 19 C -0.18 -4.42 5.04 -19.55 -0.10 -4.51 16 20 C -0.01 -0.28 9.46 22.44 0.21 -0.07 16 21 C -0.05 -0.81 1.03 -52.04 -0.05 -0.86 16 22 C -0.14 -1.89 8.55 71.98 0.62 -1.27 16 23 C -0.13 -1.90 8.61 71.98 0.62 -1.28 16 24 C 0.05 0.69 7.09 72.56 0.51 1.21 16 25 O -0.30 -6.09 11.09 -93.42 -1.04 -7.13 16 26 H 0.08 4.70 6.07 -2.38 -0.01 4.68 16 27 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 28 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 30 H 0.15 4.40 7.61 -2.91 -0.02 4.38 16 31 H 0.16 2.96 8.06 -2.92 -0.02 2.94 16 32 H 0.13 4.06 7.66 -2.91 -0.02 4.04 16 33 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.85 8.07 -2.39 -0.02 0.83 16 36 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 0.98 7.86 -2.38 -0.02 0.96 16 40 H 0.14 0.95 7.93 -2.38 -0.02 0.93 16 Total: -1.00 -70.23 337.84 6.33 -63.90 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.04 Total: 12.65 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: 4.27 Total: -14.45 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.24 Total: -53.23 kcal Atomic # 8 Polarization: -52.82 SS G_CDS: -1.24 Total: -54.06 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.23 6.33 -63.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810583427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.522 kcal (2) G-P(sol) polarization free energy of solvation -70.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds