Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47059 * 299.99841 * 3 2 1 6 6 H 1.48498 * 109.46917 * 60.00478 * 3 2 1 7 7 C 1.37873 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00091 * 174.95969 * 7 2 1 9 9 C 1.50697 * 120.00276 * 354.95976 * 7 2 1 10 10 O 1.45204 * 112.84962 * 64.94807 * 9 7 2 11 11 C 1.34727 * 116.99660 * 54.50733 * 10 9 7 12 12 O 1.21492 * 120.00154 * 355.18625 * 11 10 9 13 13 C 1.47581 * 119.99544 * 175.18795 * 11 10 9 14 14 N 1.32249 * 126.68639 * 0.02562 * 13 11 10 15 15 N 1.28843 * 110.13897 * 179.71516 * 14 13 11 16 16 H 0.97007 * 124.97437 * 179.97438 * 15 14 13 17 17 C 1.34322 * 110.05640 * 359.94319 * 15 14 13 18 18 C 1.35568 * 107.22955 * 0.11806 * 17 15 14 19 19 C 1.50371 * 124.62768 * 179.76832 * 18 17 15 20 20 C 1.53474 * 108.28522 * 343.78028 * 19 18 17 21 21 C 1.53117 * 109.50261 * 49.48871 * 20 19 18 22 22 C 1.50724 * 128.89572 * 180.19705 * 17 15 14 23 23 C 1.53782 * 113.69389 * 196.22283 * 9 7 2 24 24 C 1.53784 * 87.08301 * 89.12382 * 23 9 7 25 25 C 1.53782 * 87.07999 * 25.43361 * 24 23 9 26 26 H 0.97002 * 120.00138 * 4.99511 * 1 2 3 27 27 H 1.09002 * 109.69731 * 224.09095 * 19 18 17 28 28 H 1.09002 * 109.73931 * 103.50766 * 19 18 17 29 29 H 1.08995 * 109.47261 * 289.47506 * 20 19 18 30 30 H 1.09000 * 109.46651 * 169.49251 * 20 19 18 31 31 H 1.08994 * 109.44261 * 169.88771 * 21 20 19 32 32 H 1.08997 * 109.44143 * 49.99019 * 21 20 19 33 33 H 1.08999 * 109.69121 * 283.02326 * 22 17 15 34 34 H 1.08990 * 109.68770 * 43.60337 * 22 17 15 35 35 H 1.09000 * 113.61367 * 203.67074 * 23 9 7 36 36 H 1.09001 * 113.61321 * 334.57678 * 23 9 7 37 37 H 1.09006 * 113.61170 * 270.88904 * 24 23 9 38 38 H 1.08996 * 113.69168 * 139.99492 * 24 23 9 39 39 H 1.09006 * 113.61756 * 220.02147 * 25 24 23 40 40 H 1.08999 * 113.69166 * 89.12589 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0815 -1.1958 -0.0827 9 6 1.2555 -2.4967 0.1135 10 8 0.3933 -2.7530 -1.0263 11 6 0.9655 -2.7205 -2.2456 12 8 2.1314 -2.3990 -2.3611 13 6 0.1760 -3.0754 -3.4408 14 7 -1.0944 -3.4418 -3.4684 15 7 -1.4635 -3.6721 -4.6812 16 1 -2.3525 -3.9543 -4.9478 17 6 -0.4373 -3.4636 -5.5224 18 6 0.6262 -3.0841 -4.7722 19 6 1.9866 -2.7561 -5.3226 20 6 2.0729 -3.3060 -6.7528 21 6 0.8392 -2.8649 -7.5453 22 6 -0.4002 -3.6026 -7.0228 23 6 2.1471 -3.6910 0.4925 24 6 1.8618 -3.3370 1.9616 25 6 0.5568 -2.6887 1.4700 26 1 -0.4850 0.8369 -0.0731 27 1 2.7549 -3.2198 -4.7038 28 1 2.1279 -1.6753 -5.3352 29 1 2.1144 -4.3947 -6.7217 30 1 2.9713 -2.9220 -7.2361 31 1 0.9828 -3.0989 -8.6001 32 1 0.6980 -1.7905 -7.4284 33 1 -0.3410 -4.6570 -7.2926 34 1 -1.2989 -3.1623 -7.4546 35 1 1.7385 -4.6547 0.1883 36 1 3.1915 -3.5639 0.2077 37 1 2.5705 -2.6251 2.3848 38 1 1.7040 -4.2070 2.5990 39 1 0.3174 -1.7524 1.9742 40 1 -0.2873 -3.3773 1.4327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810855139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = 0.002911 kcal Electronic energy + Delta-G solvation = -23836.165828 eV Core-core repulsion = 20424.895561 eV Total energy + Delta-G solvation = -3411.270267 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.49144 -38.93528 -36.88890 -36.79597 -33.97778 -32.35210 -32.16018 -29.77738 -29.40552 -26.16265 -24.49516 -24.24728 -23.65140 -22.47721 -21.99876 -19.33797 -18.87778 -18.46524 -17.51209 -16.69382 -15.76653 -15.51883 -15.00179 -14.73446 -14.49155 -14.01741 -13.81288 -13.64960 -13.57443 -13.05822 -12.97857 -12.82538 -12.09225 -12.01583 -11.49496 -11.09193 -10.95184 -10.92695 -10.84220 -10.77928 -10.59785 -10.37530 -10.24931 -10.17080 -9.87325 -9.69892 -9.30228 -8.91856 -8.71453 -8.43470 -8.41659 -8.35785 -6.00304 -4.09648 2.07088 2.42687 3.07554 3.31770 3.39732 3.45945 4.04733 4.29496 4.44625 4.61666 4.72770 4.83818 5.09043 5.24980 5.31826 5.36592 5.44635 5.56647 5.62104 5.77453 5.83657 5.87533 5.99684 6.01882 6.11518 6.18562 6.32507 6.41383 6.49427 6.53300 6.57772 6.73164 6.84396 6.95849 7.18703 7.27041 7.41278 7.65061 7.87633 8.00157 8.21694 8.47185 8.92098 9.36642 9.58022 11.04222 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.005441 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.323363 B = 5144.877361 C = 5697.535951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.270 1.270 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.503 4.503 8 H 0.069 0.931 9 C 0.237 3.763 10 O -0.333 6.333 11 C 0.548 3.452 12 O -0.490 6.490 13 C 0.027 3.973 14 N -0.240 5.240 15 N -0.382 5.382 16 H 0.441 0.559 17 C -0.005 4.005 18 C -0.146 4.146 19 C -0.043 4.043 20 C -0.119 4.119 21 C -0.115 4.115 22 C -0.043 4.043 23 C -0.162 4.162 24 C -0.130 4.130 25 C -0.106 4.106 26 H 0.261 0.739 27 H 0.085 0.915 28 H 0.076 0.924 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.614 -7.808 -12.880 15.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.132 4.132 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.540 4.540 8 H 0.087 0.913 9 C 0.203 3.797 10 O -0.248 6.248 11 C 0.388 3.612 12 O -0.376 6.376 13 C -0.132 4.132 14 N -0.076 5.076 15 N -0.095 5.095 16 H 0.284 0.716 17 C -0.131 4.131 18 C -0.155 4.155 19 C -0.081 4.081 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.082 4.082 23 C -0.200 4.200 24 C -0.167 4.167 25 C -0.144 4.144 26 H 0.071 0.929 27 H 0.103 0.897 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.275 -7.750 -12.030 14.490 hybrid contribution 0.382 1.008 -0.680 1.275 sum -1.893 -6.742 -12.710 14.511 Atomic orbital electron populations 1.70054 1.05807 1.26801 1.47435 1.25055 0.94829 0.99269 0.94064 0.86523 0.80528 0.83508 0.77483 1.19412 1.21021 1.20891 1.20952 0.93525 0.88512 1.51008 0.91291 1.21262 0.86439 0.92248 0.79764 1.86586 1.44792 1.79262 1.14151 1.19155 0.84404 0.74928 0.82741 1.90745 1.16777 1.43144 1.86908 1.21280 0.90885 1.07410 0.93655 1.74125 1.14665 1.17215 1.01551 1.43080 1.12459 1.50245 1.03728 0.71581 1.21063 0.88977 1.08346 0.94728 1.19860 0.97279 1.07445 0.90942 1.19977 0.92223 1.01479 0.94423 1.21663 0.97550 1.00949 0.95529 1.21561 0.93912 1.00675 0.99116 1.20162 0.99661 1.01468 0.86878 1.23567 1.00904 0.98771 0.96722 1.22506 0.99373 0.99407 0.95451 1.22879 0.95104 1.00031 0.96391 0.92925 0.89685 0.90552 0.91854 0.91355 0.91199 0.91298 0.90246 0.90612 0.92091 0.91965 0.90221 0.93033 0.90565 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 12.54 55.43 0.69 -24.73 16 2 C 0.07 2.08 5.24 -17.82 -0.09 1.98 16 3 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 5 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.50 -14.27 6.29 -34.44 -0.22 -14.49 16 8 H 0.07 2.00 7.82 -52.48 -0.41 1.59 16 9 C 0.24 6.23 0.50 -90.96 -0.05 6.19 16 10 O -0.33 -9.10 9.94 -40.57 -0.40 -9.50 16 11 C 0.55 14.10 7.62 34.54 0.26 14.36 16 12 O -0.49 -13.17 14.17 -19.26 -0.27 -13.44 16 13 C 0.03 0.58 7.16 -83.01 -0.59 -0.01 16 14 N -0.24 -4.76 12.27 33.27 0.41 -4.35 16 15 N -0.38 -5.51 6.82 33.42 0.23 -5.28 16 16 H 0.44 4.30 8.96 -190.21 -1.71 2.59 16 17 C 0.00 -0.07 7.12 -82.45 -0.59 -0.65 16 18 C -0.15 -2.59 5.99 -104.87 -0.63 -3.22 16 19 C -0.04 -0.67 5.54 -27.80 -0.15 -0.82 16 20 C -0.12 -1.31 5.91 -26.43 -0.16 -1.47 16 21 C -0.11 -1.07 5.89 -26.46 -0.16 -1.22 16 22 C -0.04 -0.40 6.31 -27.66 -0.17 -0.57 16 23 C -0.16 -3.69 7.29 -25.92 -0.19 -3.87 16 24 C -0.13 -2.69 7.81 -25.92 -0.20 -2.89 16 25 C -0.11 -2.55 7.19 -25.91 -0.19 -2.73 16 26 H 0.26 7.32 8.32 -40.82 -0.34 6.98 16 27 H 0.08 1.44 7.68 -51.93 -0.40 1.05 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.06 0.67 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.70 8.12 -51.93 -0.42 0.28 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.42 8.09 -51.93 -0.42 1.00 16 37 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.95 7.63 -51.93 -0.40 1.55 16 40 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 330.45 15.07 4.98 4.98 Total: -1.00 -34.10 330.45 -9.62 -43.72 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.11 Total: 0.96 kcal Atomic # 6 Polarization: -6.30 SS G_CDS: -3.12 Total: -9.42 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 1.33 Total: -34.36 kcal Atomic # 8 Polarization: -22.27 SS G_CDS: -0.68 Total: -22.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -34.10 -9.62 -43.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.728 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds