Wall clock time and date at job start Tue Mar 31 2020 06:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86810 * 119.99839 * 2 1 4 4 H 1.48500 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47059 * 299.99841 * 3 2 1 6 6 H 1.48498 * 109.46917 * 60.00478 * 3 2 1 7 7 C 1.37873 * 120.00166 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00091 * 174.95969 * 7 2 1 9 9 C 1.50697 * 120.00276 * 354.95976 * 7 2 1 10 10 O 1.45204 * 112.84962 * 64.94807 * 9 7 2 11 11 C 1.34727 * 116.99660 * 54.50733 * 10 9 7 12 12 O 1.21492 * 120.00154 * 355.18625 * 11 10 9 13 13 C 1.47581 * 119.99544 * 175.18795 * 11 10 9 14 14 N 1.32249 * 126.68639 * 0.02562 * 13 11 10 15 15 N 1.28843 * 110.13897 * 179.71516 * 14 13 11 16 16 H 0.97007 * 124.97437 * 179.97438 * 15 14 13 17 17 C 1.34322 * 110.05640 * 359.94319 * 15 14 13 18 18 C 1.35568 * 107.22955 * 0.11806 * 17 15 14 19 19 C 1.50371 * 124.62768 * 179.76832 * 18 17 15 20 20 C 1.53474 * 108.28522 * 343.78028 * 19 18 17 21 21 C 1.53117 * 109.50261 * 49.48871 * 20 19 18 22 22 C 1.50724 * 128.89572 * 180.19705 * 17 15 14 23 23 C 1.53782 * 113.69389 * 196.22283 * 9 7 2 24 24 C 1.53784 * 87.08301 * 89.12382 * 23 9 7 25 25 C 1.53782 * 87.07999 * 25.43361 * 24 23 9 26 26 H 0.97002 * 120.00138 * 4.99511 * 1 2 3 27 27 H 1.09002 * 109.69731 * 224.09095 * 19 18 17 28 28 H 1.09002 * 109.73931 * 103.50766 * 19 18 17 29 29 H 1.08995 * 109.47261 * 289.47506 * 20 19 18 30 30 H 1.09000 * 109.46651 * 169.49251 * 20 19 18 31 31 H 1.08994 * 109.44261 * 169.88771 * 21 20 19 32 32 H 1.08997 * 109.44143 * 49.99019 * 21 20 19 33 33 H 1.08999 * 109.69121 * 283.02326 * 22 17 15 34 34 H 1.08990 * 109.68770 * 43.60337 * 22 17 15 35 35 H 1.09000 * 113.61367 * 203.67074 * 23 9 7 36 36 H 1.09001 * 113.61321 * 334.57678 * 23 9 7 37 37 H 1.09006 * 113.61170 * 270.88904 * 24 23 9 38 38 H 1.08996 * 113.69168 * 139.99492 * 24 23 9 39 39 H 1.09006 * 113.61756 * 220.02147 * 25 24 23 40 40 H 1.08999 * 113.69166 * 89.12589 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6179 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0815 -1.1958 -0.0827 9 6 1.2555 -2.4967 0.1135 10 8 0.3933 -2.7530 -1.0263 11 6 0.9655 -2.7205 -2.2456 12 8 2.1314 -2.3990 -2.3611 13 6 0.1760 -3.0754 -3.4408 14 7 -1.0944 -3.4418 -3.4684 15 7 -1.4635 -3.6721 -4.6812 16 1 -2.3525 -3.9543 -4.9478 17 6 -0.4373 -3.4636 -5.5224 18 6 0.6262 -3.0841 -4.7722 19 6 1.9866 -2.7561 -5.3226 20 6 2.0729 -3.3060 -6.7528 21 6 0.8392 -2.8649 -7.5453 22 6 -0.4002 -3.6026 -7.0228 23 6 2.1471 -3.6910 0.4925 24 6 1.8618 -3.3370 1.9616 25 6 0.5568 -2.6887 1.4700 26 1 -0.4850 0.8369 -0.0731 27 1 2.7549 -3.2198 -4.7038 28 1 2.1279 -1.6753 -5.3352 29 1 2.1144 -4.3947 -6.7217 30 1 2.9713 -2.9220 -7.2361 31 1 0.9828 -3.0989 -8.6001 32 1 0.6980 -1.7905 -7.4284 33 1 -0.3410 -4.6570 -7.2926 34 1 -1.2989 -3.1623 -7.4546 35 1 1.7385 -4.6547 0.1883 36 1 3.1915 -3.5639 0.2077 37 1 2.5705 -2.6251 2.3848 38 1 1.7040 -4.2070 2.5990 39 1 0.3174 -1.7524 1.9742 40 1 -0.2873 -3.3773 1.4327 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810855139.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:24 Heat of formation + Delta-G solvation = -21.539494 kcal Electronic energy + Delta-G solvation = -23837.099977 eV Core-core repulsion = 20424.895561 eV Total energy + Delta-G solvation = -3412.204416 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.82906 -40.90136 -38.77697 -37.81077 -35.97084 -34.35970 -33.63018 -30.91971 -30.54451 -28.24908 -26.38805 -26.07015 -24.68407 -24.22786 -23.03764 -21.05784 -20.47117 -20.02528 -18.83893 -18.48354 -17.36884 -17.13450 -16.98637 -16.71848 -15.94387 -15.66543 -15.36049 -14.92324 -14.69422 -14.52906 -14.17709 -14.08717 -13.92995 -13.50682 -13.03720 -12.97297 -12.93793 -12.80120 -12.22638 -12.10355 -11.88561 -11.79997 -11.71143 -11.64257 -11.62663 -11.55538 -11.17216 -10.81425 -10.51564 -10.44207 -10.30989 -9.63599 -8.17971 -6.33148 0.52611 1.09086 1.32193 1.34060 1.47047 1.85113 2.35321 2.37216 2.49128 3.13303 3.54031 3.64884 3.92129 3.99874 4.03718 4.08404 4.21386 4.25909 4.35653 4.43911 4.60097 4.64700 4.68483 4.80095 4.85467 4.92973 5.00580 5.06628 5.13462 5.15184 5.26597 5.34216 5.36797 5.43547 5.49695 5.51895 5.64990 5.76377 5.95905 6.18435 6.42088 6.69017 6.83557 7.31634 7.44835 8.86270 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018022 B = 0.005441 C = 0.004913 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.323363 B = 5144.877361 C = 5697.535951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.949 3.051 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.512 4.512 8 H 0.051 0.949 9 C 0.207 3.793 10 O -0.351 6.351 11 C 0.537 3.463 12 O -0.519 6.519 13 C -0.019 4.019 14 N -0.269 5.269 15 N -0.356 5.356 16 H 0.463 0.537 17 C 0.029 3.971 18 C -0.173 4.173 19 C -0.044 4.044 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.041 4.041 23 C -0.155 4.155 24 C -0.106 4.106 25 C -0.106 4.106 26 H 0.261 0.739 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.052 0.948 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 -8.881 -15.310 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.549 4.549 8 H 0.069 0.931 9 C 0.173 3.827 10 O -0.267 6.267 11 C 0.380 3.620 12 O -0.406 6.406 13 C -0.176 4.176 14 N -0.107 5.107 15 N -0.072 5.072 16 H 0.311 0.689 17 C -0.099 4.099 18 C -0.183 4.183 19 C -0.083 4.083 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.079 4.079 23 C -0.193 4.193 24 C -0.143 4.143 25 C -0.144 4.144 26 H 0.070 0.930 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.071 0.929 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -2.970 -8.836 -14.449 17.195 hybrid contribution 0.537 1.280 -0.026 1.388 sum -2.433 -7.556 -14.475 16.509 Atomic orbital electron populations 1.70158 1.06960 1.27417 1.48595 1.25746 0.95622 1.02276 0.93825 0.85642 0.79317 0.79810 0.77797 1.19221 1.21178 1.19275 1.21040 0.92811 0.90098 1.50978 0.93061 1.21608 0.87767 0.92937 0.80404 1.86559 1.45407 1.79528 1.15171 1.19807 0.84719 0.74169 0.83317 1.90692 1.17988 1.44637 1.87324 1.21037 0.92071 1.10783 0.93678 1.73982 1.14049 1.18414 1.04288 1.43161 1.13650 1.47987 1.02405 0.68883 1.21797 0.86936 1.04326 0.96851 1.20212 0.99370 1.08923 0.89790 1.19988 0.90681 1.00256 0.97349 1.21648 0.99618 1.01322 0.92339 1.21614 0.92677 1.00020 1.00820 1.20503 1.01119 1.03770 0.82511 1.23501 0.99676 0.97981 0.98165 1.22421 0.96891 1.00387 0.94646 1.22859 0.96856 0.99464 0.95211 0.92972 0.92484 0.92519 0.90879 0.89845 0.87392 0.92397 0.87119 0.87331 0.90905 0.92851 0.90265 0.88898 0.92904 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.43 12.54 21.45 0.27 -54.16 16 2 C 0.03 1.61 5.24 84.65 0.44 2.05 16 3 Si 0.95 46.60 29.54 68.60 2.03 48.63 16 4 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.51 -30.27 6.29 25.60 0.16 -30.11 16 8 H 0.05 3.12 7.82 -2.91 -0.02 3.10 16 9 C 0.21 11.28 0.50 -11.01 -0.01 11.28 16 10 O -0.35 -20.15 9.94 -56.37 -0.56 -20.71 16 11 C 0.54 29.30 7.62 70.29 0.54 29.84 16 12 O -0.52 -29.78 14.17 19.86 0.28 -29.50 16 13 C -0.02 -0.88 7.16 42.11 0.30 -0.58 16 14 N -0.27 -10.81 12.27 -48.66 -0.60 -11.41 16 15 N -0.36 -9.58 6.82 -48.17 -0.33 -9.91 16 16 H 0.46 7.63 8.96 -219.79 -1.97 5.66 16 17 C 0.03 0.74 7.12 41.57 0.30 1.04 16 18 C -0.17 -6.20 5.99 -20.02 -0.12 -6.32 16 19 C -0.04 -1.43 5.54 29.90 0.17 -1.26 16 20 C -0.11 -2.20 5.91 30.79 0.18 -2.02 16 21 C -0.11 -1.63 5.89 30.77 0.18 -1.44 16 22 C -0.04 -0.54 6.31 29.99 0.19 -0.35 16 23 C -0.16 -7.19 7.29 31.12 0.23 -6.96 16 24 C -0.11 -4.32 7.81 31.12 0.24 -4.08 16 25 C -0.11 -5.17 7.19 31.12 0.22 -4.95 16 26 H 0.26 15.13 8.32 -92.71 -0.77 14.36 16 27 H 0.06 2.09 7.68 -2.39 -0.02 2.07 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.07 1.32 8.12 -2.39 -0.02 1.30 16 30 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 33 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.05 2.51 8.09 -2.39 -0.02 2.49 16 37 H 0.08 3.22 8.14 -2.38 -0.02 3.20 16 38 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.05 2.78 7.63 -2.38 -0.02 2.76 16 40 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -80.22 330.45 3.20 -77.02 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -0.91 Total: 13.91 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 3.02 Total: -13.87 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -0.66 Total: -75.48 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.28 Total: -50.20 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -80.22 3.20 -77.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810855139.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.480 kcal (2) G-P(sol) polarization free energy of solvation -80.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds