Wall clock time and date at job start Tue Mar 31 2020 06:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99692 * 2 1 4 4 H 1.48503 * 109.46798 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47048 * 299.99517 * 3 2 1 6 6 H 1.48496 * 109.47436 * 59.99589 * 3 2 1 7 7 C 1.37869 * 119.99903 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00168 * 173.75945 * 7 2 1 9 9 C 1.50700 * 120.00507 * 353.75274 * 7 2 1 10 10 O 1.45194 * 112.84968 * 62.61263 * 9 7 2 11 11 C 1.34228 * 117.00046 * 65.19078 * 10 9 7 12 12 O 1.20822 * 119.99885 * 357.70717 * 11 10 9 13 13 C 1.50702 * 120.00430 * 177.98140 * 11 10 9 14 14 H 1.09001 * 109.42388 * 59.72415 * 13 11 10 15 15 C 1.53024 * 109.43273 * 179.62311 * 13 11 10 16 16 C 1.53394 * 109.73900 * 191.85093 * 15 13 11 17 17 C 1.50946 * 108.17196 * 309.28707 * 16 15 13 18 18 N 1.30135 * 128.28435 * 196.84988 * 17 16 15 19 19 N 1.40310 * 108.12287 * 179.69947 * 18 17 16 20 20 H 0.97000 * 126.00577 * 180.02562 * 19 18 17 21 21 C 1.35202 * 107.99313 * 0.04175 * 19 18 17 22 22 C 1.34568 * 107.61731 * 0.03890 * 21 19 18 23 23 C 1.50885 * 128.32344 * 179.85984 * 22 21 19 24 24 C 1.53776 * 113.61786 * 193.81160 * 9 7 2 25 25 C 1.53955 * 87.01908 * 89.22941 * 24 9 7 26 26 C 1.53776 * 87.11403 * 25.36440 * 25 24 9 27 27 H 0.96997 * 120.00445 * 5.01757 * 1 2 3 28 28 H 1.09003 * 109.42490 * 311.89010 * 15 13 11 29 29 H 1.08999 * 109.42097 * 71.71809 * 15 13 11 30 30 H 1.08995 * 109.71070 * 189.62782 * 16 15 13 31 31 H 1.08999 * 109.74739 * 68.96410 * 16 15 13 32 32 H 1.08002 * 126.19055 * 179.97438 * 21 19 18 33 33 H 1.09001 * 109.72257 * 76.90016 * 23 22 21 34 34 H 1.08997 * 109.71662 * 316.24205 * 23 22 21 35 35 H 1.09000 * 113.61731 * 203.74964 * 24 9 7 36 36 H 1.09001 * 113.61545 * 334.65368 * 24 9 7 37 37 H 1.09007 * 113.53842 * 270.80513 * 25 24 9 38 38 H 1.09003 * 113.74228 * 139.94675 * 25 24 9 39 39 H 1.08997 * 113.61556 * 220.09160 * 26 25 24 40 40 H 1.09003 * 113.61605 * 89.18392 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0797 -1.1969 -0.1011 9 6 1.2578 -2.4952 0.1431 10 8 0.3350 -2.7386 -0.9511 11 6 0.8684 -2.9167 -2.1699 12 8 2.0635 -2.8297 -2.3249 13 6 -0.0238 -3.2191 -3.3462 14 1 -0.7341 -2.4034 -3.4816 15 6 0.8294 -3.3659 -4.6079 16 6 -0.0753 -3.3781 -5.8466 17 6 -1.1668 -4.3964 -5.6224 18 7 -1.9545 -4.9413 -6.5034 19 7 -2.8053 -5.8345 -5.8349 20 1 -3.4948 -6.3800 -6.2446 21 6 -2.4954 -5.8011 -4.5193 22 6 -1.4894 -4.9216 -4.3600 23 6 -0.7882 -4.5230 -3.0848 24 6 2.1657 -3.6948 0.4616 25 6 1.9587 -3.3540 1.9487 26 6 0.6318 -2.6971 1.5333 27 1 -0.4850 0.8368 -0.0735 28 1 1.5240 -2.5285 -4.6753 29 1 1.3911 -4.2987 -4.5591 30 1 0.5083 -3.6520 -6.7254 31 1 -0.5165 -2.3917 -5.9902 32 1 -2.9701 -6.3755 -3.7375 33 1 -0.0897 -5.3057 -2.7890 34 1 -1.5226 -4.3668 -2.2947 35 1 1.7393 -4.6547 0.1702 36 1 3.1936 -3.5667 0.1224 37 1 2.6918 -2.6484 2.3397 38 1 1.8320 -4.2292 2.5860 39 1 0.4232 -1.7647 2.0578 40 1 -0.2148 -3.3837 1.5353 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857210.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:52 Heat of formation + Delta-G solvation = -20.135223 kcal Electronic energy + Delta-G solvation = -23695.663877 eV Core-core repulsion = 20283.520355 eV Total energy + Delta-G solvation = -3412.143522 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.40489 -41.10591 -39.11918 -37.05862 -35.92877 -34.33757 -33.20765 -31.43284 -29.89264 -28.13155 -26.31759 -25.78907 -25.00741 -23.53447 -21.95266 -21.07321 -20.41169 -19.71947 -18.75837 -18.48463 -17.36778 -17.00547 -16.79474 -16.40989 -15.94431 -15.69268 -15.33364 -15.01508 -14.66886 -14.27286 -14.11676 -13.75762 -13.62490 -13.43305 -12.99208 -12.92944 -12.87884 -12.83084 -12.62489 -12.19771 -12.07132 -11.97917 -11.84807 -11.71403 -11.57824 -11.27962 -10.96943 -10.75017 -10.41417 -10.35245 -10.30650 -9.34245 -8.15880 -6.32849 0.99565 1.35319 1.38803 1.49967 1.75969 1.82913 2.04261 2.36728 2.42770 3.14475 3.47558 3.87555 3.88175 3.97929 4.06080 4.09141 4.22913 4.30524 4.37014 4.44729 4.53667 4.60709 4.70922 4.80786 4.85724 4.89687 4.96125 4.99623 5.06248 5.19980 5.21630 5.25098 5.32636 5.41146 5.47983 5.67146 5.69559 5.82410 6.10258 6.52276 6.53533 6.72229 6.75760 7.35245 7.53446 8.87994 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020740 B = 0.004773 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.756446 B = 5864.393816 C = 6481.319412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.035 3.965 3 Si 0.945 3.055 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.528 4.528 8 H 0.046 0.954 9 C 0.214 3.786 10 O -0.353 6.353 11 C 0.459 3.541 12 O -0.544 6.544 13 C -0.075 4.075 14 H 0.095 0.905 15 C -0.090 4.090 16 C -0.032 4.032 17 C 0.071 3.929 18 N -0.321 5.321 19 N -0.476 5.476 20 H 0.453 0.547 21 C 0.083 3.917 22 C -0.258 4.258 23 C -0.015 4.015 24 C -0.152 4.152 25 C -0.113 4.113 26 C -0.106 4.106 27 H 0.264 0.736 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.091 0.909 32 H 0.217 0.783 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.403 -11.660 -6.763 14.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.168 4.168 3 Si 0.770 3.230 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.565 4.565 8 H 0.064 0.936 9 C 0.180 3.820 10 O -0.269 6.269 11 C 0.303 3.697 12 O -0.435 6.435 13 C -0.094 4.094 14 H 0.114 0.886 15 C -0.128 4.128 16 C -0.071 4.071 17 C -0.097 4.097 18 N -0.144 5.144 19 N -0.186 5.186 20 H 0.300 0.700 21 C -0.064 4.064 22 C -0.269 4.269 23 C -0.054 4.054 24 C -0.189 4.189 25 C -0.150 4.150 26 C -0.144 4.144 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.118 0.882 31 H 0.109 0.891 32 H 0.233 0.767 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.543 -11.579 -7.902 15.470 hybrid contribution 0.448 1.046 0.597 1.285 sum -6.095 -10.533 -7.306 14.194 Atomic orbital electron populations 1.70116 1.06690 1.27548 1.47884 1.25662 0.95626 1.01878 0.93625 0.85715 0.79160 0.80136 0.77962 1.19761 1.20716 1.19561 1.21086 0.92851 0.90656 1.51913 0.93610 1.21380 0.86451 0.92373 0.81840 1.86455 1.44048 1.79123 1.17275 1.23739 0.88042 0.72590 0.85369 1.90513 1.18524 1.48451 1.86023 1.21077 0.96862 1.00868 0.90608 0.88650 1.21334 0.96873 1.03215 0.91400 1.20123 0.92449 0.96214 0.98296 1.22560 0.97192 0.98251 0.91649 1.76909 1.07358 1.08916 1.21235 1.46331 1.31232 1.35511 1.05521 0.69964 1.22576 0.96788 0.99073 0.87922 1.20117 1.04706 1.06633 0.95442 1.19715 0.97726 0.93716 0.94224 1.23476 0.99674 0.98150 0.97650 1.22490 0.97178 1.00326 0.95021 1.22867 0.96813 0.99333 0.95381 0.92718 0.91200 0.91185 0.88157 0.89109 0.76659 0.91055 0.89786 0.90645 0.93571 0.90884 0.89058 0.93265 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.10 12.78 21.44 0.27 -49.83 16 2 C 0.04 1.96 5.29 84.65 0.45 2.40 16 3 Si 0.94 44.13 29.55 68.60 2.03 46.16 16 4 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 7 C -0.53 -29.64 7.08 25.60 0.18 -29.46 16 8 H 0.05 2.70 7.81 -2.91 -0.02 2.67 16 9 C 0.21 10.74 0.47 -11.01 -0.01 10.73 16 10 O -0.35 -17.57 9.69 -51.40 -0.50 -18.07 16 11 C 0.46 20.97 6.79 71.24 0.48 21.45 16 12 O -0.54 -27.80 14.21 21.97 0.31 -27.49 16 13 C -0.07 -2.61 2.57 -11.40 -0.03 -2.63 16 14 H 0.10 3.41 8.10 -2.39 -0.02 3.39 16 15 C -0.09 -2.76 4.64 30.73 0.14 -2.62 16 16 C -0.03 -0.81 6.31 30.06 0.19 -0.62 16 17 C 0.07 1.93 7.10 43.44 0.31 2.24 16 18 N -0.32 -8.40 12.68 -47.13 -0.60 -9.00 16 19 N -0.48 -8.81 7.37 -57.88 -0.43 -9.23 16 20 H 0.45 4.88 8.96 -213.19 -1.91 2.97 16 21 C 0.08 1.52 11.95 83.33 1.00 2.52 16 22 C -0.26 -6.52 5.89 -20.10 -0.12 -6.63 16 23 C -0.02 -0.44 5.50 30.04 0.17 -0.27 16 24 C -0.15 -6.57 6.56 31.18 0.20 -6.36 16 25 C -0.11 -4.32 7.81 31.18 0.24 -4.07 16 26 C -0.11 -4.74 7.28 31.12 0.23 -4.51 16 27 H 0.26 14.15 8.32 -92.71 -0.77 13.38 16 28 H 0.07 2.33 7.69 -2.39 -0.02 2.31 16 29 H 0.07 2.13 8.10 -2.39 -0.02 2.11 16 30 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.22 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.07 2.00 8.12 -2.39 -0.02 1.98 16 34 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.08 2.97 8.14 -2.39 -0.02 2.95 16 36 H 0.05 2.12 8.09 -2.39 -0.02 2.10 16 37 H 0.07 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 39 H 0.05 2.40 7.97 -2.39 -0.02 2.38 16 40 H 0.07 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -71.03 331.07 3.67 -67.36 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.86 Total: 17.94 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 3.44 Total: -17.84 kcal Atomic # 7 Polarization: -67.31 SS G_CDS: -0.75 Total: -68.06 kcal Atomic # 8 Polarization: -45.37 SS G_CDS: -0.19 Total: -45.56 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -71.03 3.67 -67.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857210.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.222 kcal (2) G-P(sol) polarization free energy of solvation -71.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds