Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99677 * 2 1 4 4 H 1.48510 * 109.47037 * 268.70848 * 3 2 1 5 5 H 1.48496 * 109.47654 * 28.71036 * 3 2 1 6 6 H 1.48501 * 109.46686 * 148.71189 * 3 2 1 7 7 C 1.37868 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 6.23251 * 7 2 1 9 9 C 1.50697 * 120.00182 * 186.22763 * 7 2 1 10 10 O 1.45203 * 112.84657 * 61.51435 * 9 7 2 11 11 C 1.34222 * 117.00223 * 54.00871 * 10 9 7 12 12 O 1.20829 * 119.99939 * 5.17659 * 11 10 9 13 13 C 1.50696 * 120.00225 * 185.18351 * 11 10 9 14 14 H 1.08999 * 109.43081 * 332.47557 * 13 11 10 15 15 C 1.53036 * 109.42833 * 212.63117 * 13 11 10 16 16 C 1.53378 * 109.74195 * 168.18282 * 15 13 11 17 17 C 1.50950 * 108.20333 * 50.64906 * 16 15 13 18 18 N 1.30124 * 128.28709 * 163.20001 * 17 16 15 19 19 N 1.40314 * 108.12760 * 180.31215 * 18 17 16 20 20 H 0.96998 * 126.00527 * 179.90550 * 19 18 17 21 21 C 1.35194 * 107.98910 * 359.93013 * 19 18 17 22 22 C 1.34573 * 107.61868 * 359.97438 * 21 19 18 23 23 C 1.50887 * 128.32333 * 180.16343 * 22 21 19 24 24 C 1.53779 * 113.69801 * 192.78173 * 9 7 2 25 25 C 1.53783 * 87.07799 * 89.12698 * 24 9 7 26 26 C 1.53785 * 87.08305 * 25.43864 * 25 24 9 27 27 H 0.97002 * 119.99765 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.42417 * 288.26750 * 15 13 11 29 29 H 1.09000 * 109.42376 * 48.10431 * 15 13 11 30 30 H 1.08997 * 109.71232 * 170.32253 * 16 15 13 31 31 H 1.08994 * 109.72069 * 290.96873 * 16 15 13 32 32 H 1.08006 * 126.18928 * 179.97438 * 21 19 18 33 33 H 1.08995 * 109.71956 * 283.08368 * 23 22 21 34 34 H 1.09002 * 109.71644 * 43.69026 * 23 22 21 35 35 H 1.08998 * 113.61862 * 203.67632 * 24 9 7 36 36 H 1.08999 * 113.61315 * 334.58331 * 24 9 7 37 37 H 1.08993 * 113.61703 * 270.88523 * 25 24 9 38 38 H 1.09004 * 113.60873 * 139.98365 * 25 24 9 39 39 H 1.08997 * 113.61174 * 220.01816 * 26 25 24 40 40 H 1.08999 * 113.61613 * 89.11380 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5239 2.0307 -1.3998 5 1 1.4333 2.6605 0.6725 6 1 3.5328 1.4482 0.7271 7 6 2.0045 -1.1940 -0.0005 8 1 1.4694 -2.1265 -0.1025 9 6 3.5048 -1.1980 0.1410 10 8 3.9540 -0.6266 1.3980 11 6 3.4337 -1.1426 2.5225 12 8 2.7020 -2.1024 2.4646 13 6 3.7619 -0.5249 3.8573 14 1 4.7387 -0.0443 3.8041 15 6 3.7904 -1.6161 4.9300 16 6 4.4052 -1.0586 6.2199 17 6 3.7004 0.2326 6.5584 18 7 3.6884 0.8714 7.6920 19 7 2.8951 2.0184 7.5384 20 1 2.7093 2.6792 8.2238 21 6 2.4347 2.0405 6.2675 22 6 2.9171 0.9519 5.6405 23 6 2.6975 0.5212 4.2112 24 6 4.1529 -2.5538 -0.1857 25 6 4.2386 -2.0725 -1.6438 26 6 4.2411 -0.6387 -1.0878 27 1 -0.4850 0.8401 0.0004 28 1 2.7738 -1.9547 5.1297 29 1 4.3887 -2.4560 4.5768 30 1 4.2705 -1.7746 7.0306 31 1 5.4678 -0.8689 6.0688 32 1 1.7954 2.7953 5.8339 33 1 1.7044 0.0843 4.1072 34 1 2.7918 1.3819 3.5491 35 1 5.1256 -2.6975 0.2846 36 1 3.4839 -3.4027 -0.0447 37 1 3.3541 -2.3101 -2.2347 38 1 5.1681 -2.3496 -2.1410 39 1 3.6434 0.0584 -1.6751 40 1 5.2380 -0.2588 -0.8641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810857212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = 6.947096 kcal Electronic energy + Delta-G solvation = -23954.247784 eV Core-core repulsion = 20543.278640 eV Total energy + Delta-G solvation = -3410.969144 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43654 -39.60851 -37.70451 -35.82578 -34.33727 -32.32217 -32.17145 -30.45114 -28.79420 -26.60054 -24.90653 -24.64411 -23.44300 -22.09520 -20.98290 -19.79343 -18.58833 -18.54206 -17.57814 -17.16432 -15.91514 -15.40987 -15.29625 -15.11074 -14.56146 -14.32328 -13.75254 -13.65768 -13.30957 -13.11673 -12.88180 -12.72247 -12.39965 -11.88920 -11.74205 -11.70990 -11.43983 -11.07415 -10.97105 -10.80029 -10.69231 -10.55851 -10.21639 -10.19931 -9.94651 -9.75180 -9.37031 -9.29340 -8.97485 -8.69482 -8.50185 -8.36652 -6.18293 -4.22485 1.89885 2.76423 2.83895 3.22387 3.28452 3.42377 3.50714 3.85663 4.38596 4.52318 4.80564 4.98358 5.08797 5.18686 5.27909 5.48231 5.50280 5.53346 5.59846 5.63572 5.68968 5.77153 5.84113 5.96308 6.00309 6.13793 6.25349 6.28689 6.33883 6.39400 6.41698 6.52919 6.67426 6.70120 6.86466 6.95757 7.27274 7.28828 7.51378 7.67495 7.89212 8.44212 8.89600 9.09825 9.43193 10.92428 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.005675 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.741790 B = 4932.496733 C = 5684.896682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.084 3.916 3 Si 0.853 3.147 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.230 1.230 7 C -0.500 4.500 8 H 0.084 0.916 9 C 0.198 3.802 10 O -0.369 6.369 11 C 0.463 3.537 12 O -0.485 6.485 13 C -0.081 4.081 14 H 0.093 0.907 15 C -0.100 4.100 16 C -0.036 4.036 17 C 0.084 3.916 18 N -0.294 5.294 19 N -0.488 5.488 20 H 0.437 0.563 21 C 0.060 3.940 22 C -0.224 4.224 23 C -0.032 4.032 24 C -0.146 4.146 25 C -0.124 4.124 26 C -0.135 4.135 27 H 0.266 0.734 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.177 0.823 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.454 3.372 10.012 13.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.121 4.121 3 Si 0.679 3.321 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.153 1.153 7 C -0.537 4.537 8 H 0.102 0.898 9 C 0.164 3.836 10 O -0.288 6.288 11 C 0.303 3.697 12 O -0.371 6.371 13 C -0.100 4.100 14 H 0.111 0.889 15 C -0.138 4.138 16 C -0.075 4.075 17 C -0.084 4.084 18 N -0.116 5.116 19 N -0.197 5.197 20 H 0.281 0.719 21 C -0.086 4.086 22 C -0.235 4.235 23 C -0.071 4.071 24 C -0.184 4.184 25 C -0.162 4.162 26 C -0.172 4.172 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.103 0.897 32 H 0.194 0.806 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.486 3.178 11.132 14.354 hybrid contribution -0.333 1.500 -0.568 1.638 sum 8.153 4.679 10.564 14.141 Atomic orbital electron populations 1.69936 1.06412 1.27242 1.48080 1.24956 0.94628 0.99173 0.93356 0.87253 0.82428 0.83299 0.79087 1.20430 1.21811 1.15313 1.20758 0.87237 0.95176 1.50540 0.89779 1.21632 0.94750 0.89824 0.77354 1.86547 1.64632 1.61616 1.15962 1.22782 0.78426 0.82471 0.86018 1.90606 1.32721 1.26096 1.87642 1.21010 1.01265 0.97076 0.90698 0.88860 1.21445 1.02996 0.96893 0.92442 1.20156 0.98754 0.90659 0.97969 1.22395 0.97938 0.97411 0.90671 1.76944 1.15182 0.97212 1.22289 1.46263 1.41148 1.21611 1.10681 0.71942 1.22059 1.00538 1.00113 0.85853 1.20078 1.07162 0.98071 0.98173 1.19888 0.98892 0.97755 0.90530 1.23334 0.99624 0.99426 0.96033 1.22467 1.00909 0.96484 0.96297 1.23287 0.99489 0.97180 0.97263 0.92471 0.90174 0.90420 0.89608 0.89661 0.80611 0.89839 0.90479 0.91753 0.91340 0.89647 0.92509 0.91336 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.34 13.96 55.43 0.77 -25.57 16 2 C 0.08 2.36 5.47 -17.82 -0.10 2.26 16 3 Si 0.85 20.73 24.75 -169.99 -4.21 16.53 16 4 H -0.28 -6.63 7.09 56.52 0.40 -6.23 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.23 -5.34 5.66 56.52 0.32 -5.02 16 7 C -0.50 -13.89 7.10 -34.44 -0.24 -14.13 16 8 H 0.08 2.62 8.05 -52.49 -0.42 2.19 16 9 C 0.20 4.68 0.25 -90.96 -0.02 4.66 16 10 O -0.37 -8.46 7.79 -39.24 -0.31 -8.76 16 11 C 0.46 10.02 6.51 36.00 0.23 10.25 16 12 O -0.48 -11.99 14.84 -18.75 -0.28 -12.27 16 13 C -0.08 -1.36 2.56 -91.56 -0.23 -1.59 16 14 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 15 C -0.10 -1.42 4.66 -26.52 -0.12 -1.55 16 16 C -0.04 -0.44 6.31 -27.57 -0.17 -0.61 16 17 C 0.08 1.20 7.10 -82.35 -0.58 0.62 16 18 N -0.29 -4.14 12.68 33.75 0.43 -3.71 16 19 N -0.49 -5.51 7.37 30.35 0.22 -5.29 16 20 H 0.44 3.29 8.96 -182.44 -1.64 1.65 16 21 C 0.06 0.72 11.95 -17.37 -0.21 0.51 16 22 C -0.22 -3.25 5.89 -104.98 -0.62 -3.87 16 23 C -0.03 -0.54 5.56 -27.60 -0.15 -0.69 16 24 C -0.15 -3.03 7.11 -25.92 -0.18 -3.22 16 25 C -0.12 -2.33 7.80 -25.92 -0.20 -2.53 16 26 C -0.13 -2.80 6.26 -25.91 -0.16 -2.96 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.11 16 28 H 0.08 1.24 8.10 -51.93 -0.42 0.82 16 29 H 0.08 1.05 8.08 -51.93 -0.42 0.63 16 30 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 33 H 0.08 1.53 8.12 -51.93 -0.42 1.11 16 34 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.07 1.49 8.09 -51.93 -0.42 1.07 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.07 1.49 6.07 -51.93 -0.32 1.17 16 40 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 322.73 15.07 4.86 4.86 Total: -1.00 -33.51 322.73 -8.35 -41.86 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -7.08 Total: 5.21 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.78 Total: -12.86 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 1.43 Total: -34.57 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.58 Total: -21.03 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.21 Total: 16.53 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.51 -8.35 -41.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.807 kcal (2) G-P(sol) polarization free energy of solvation -33.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds