Wall clock time and date at job start Tue Mar 31 2020 06:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 119.99677 * 2 1 4 4 H 1.48510 * 109.47037 * 268.70848 * 3 2 1 5 5 H 1.48496 * 109.47654 * 28.71036 * 3 2 1 6 6 H 1.48501 * 109.46686 * 148.71189 * 3 2 1 7 7 C 1.37868 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 6.23251 * 7 2 1 9 9 C 1.50697 * 120.00182 * 186.22763 * 7 2 1 10 10 O 1.45203 * 112.84657 * 61.51435 * 9 7 2 11 11 C 1.34222 * 117.00223 * 54.00871 * 10 9 7 12 12 O 1.20829 * 119.99939 * 5.17659 * 11 10 9 13 13 C 1.50696 * 120.00225 * 185.18351 * 11 10 9 14 14 H 1.08999 * 109.43081 * 332.47557 * 13 11 10 15 15 C 1.53036 * 109.42833 * 212.63117 * 13 11 10 16 16 C 1.53378 * 109.74195 * 168.18282 * 15 13 11 17 17 C 1.50950 * 108.20333 * 50.64906 * 16 15 13 18 18 N 1.30124 * 128.28709 * 163.20001 * 17 16 15 19 19 N 1.40314 * 108.12760 * 180.31215 * 18 17 16 20 20 H 0.96998 * 126.00527 * 179.90550 * 19 18 17 21 21 C 1.35194 * 107.98910 * 359.93013 * 19 18 17 22 22 C 1.34573 * 107.61868 * 359.97438 * 21 19 18 23 23 C 1.50887 * 128.32333 * 180.16343 * 22 21 19 24 24 C 1.53779 * 113.69801 * 192.78173 * 9 7 2 25 25 C 1.53783 * 87.07799 * 89.12698 * 24 9 7 26 26 C 1.53785 * 87.08305 * 25.43864 * 25 24 9 27 27 H 0.97002 * 119.99765 * 359.97438 * 1 2 3 28 28 H 1.08996 * 109.42417 * 288.26750 * 15 13 11 29 29 H 1.09000 * 109.42376 * 48.10431 * 15 13 11 30 30 H 1.08997 * 109.71232 * 170.32253 * 16 15 13 31 31 H 1.08994 * 109.72069 * 290.96873 * 16 15 13 32 32 H 1.08006 * 126.18928 * 179.97438 * 21 19 18 33 33 H 1.08995 * 109.71956 * 283.08368 * 23 22 21 34 34 H 1.09002 * 109.71644 * 43.69026 * 23 22 21 35 35 H 1.08998 * 113.61862 * 203.67632 * 24 9 7 36 36 H 1.08999 * 113.61315 * 334.58331 * 24 9 7 37 37 H 1.08993 * 113.61703 * 270.88523 * 25 24 9 38 38 H 1.09004 * 113.60873 * 139.98365 * 25 24 9 39 39 H 1.08997 * 113.61174 * 220.01816 * 26 25 24 40 40 H 1.08999 * 113.61613 * 89.11380 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.5239 2.0307 -1.3998 5 1 1.4333 2.6605 0.6725 6 1 3.5328 1.4482 0.7271 7 6 2.0045 -1.1940 -0.0005 8 1 1.4694 -2.1265 -0.1025 9 6 3.5048 -1.1980 0.1410 10 8 3.9540 -0.6266 1.3980 11 6 3.4337 -1.1426 2.5225 12 8 2.7020 -2.1024 2.4646 13 6 3.7619 -0.5249 3.8573 14 1 4.7387 -0.0443 3.8041 15 6 3.7904 -1.6161 4.9300 16 6 4.4052 -1.0586 6.2199 17 6 3.7004 0.2326 6.5584 18 7 3.6884 0.8714 7.6920 19 7 2.8951 2.0184 7.5384 20 1 2.7093 2.6792 8.2238 21 6 2.4347 2.0405 6.2675 22 6 2.9171 0.9519 5.6405 23 6 2.6975 0.5212 4.2112 24 6 4.1529 -2.5538 -0.1857 25 6 4.2386 -2.0725 -1.6438 26 6 4.2411 -0.6387 -1.0878 27 1 -0.4850 0.8401 0.0004 28 1 2.7738 -1.9547 5.1297 29 1 4.3887 -2.4560 4.5768 30 1 4.2705 -1.7746 7.0306 31 1 5.4678 -0.8689 6.0688 32 1 1.7954 2.7953 5.8339 33 1 1.7044 0.0843 4.1072 34 1 2.7918 1.3819 3.5491 35 1 5.1256 -2.6975 0.2846 36 1 3.4839 -3.4027 -0.0447 37 1 3.3541 -2.3101 -2.2347 38 1 5.1681 -2.3496 -2.1410 39 1 3.6434 0.0584 -1.6751 40 1 5.2380 -0.2588 -0.8641 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000810857212.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:54 Heat of formation + Delta-G solvation = -14.769387 kcal Electronic energy + Delta-G solvation = -23955.189482 eV Core-core repulsion = 20543.278640 eV Total energy + Delta-G solvation = -3411.910842 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.47187 -41.33298 -39.32356 -37.15908 -36.13559 -34.47982 -33.26089 -31.53336 -29.94824 -28.58514 -26.57595 -25.95733 -24.98052 -23.53668 -22.01202 -21.24207 -20.43791 -19.72524 -18.98901 -18.57453 -17.56805 -17.28936 -17.02772 -16.34423 -15.97859 -15.72014 -15.46238 -14.92669 -14.83130 -14.68196 -14.36983 -13.88798 -13.72737 -13.48959 -13.28220 -12.97289 -12.88506 -12.80539 -12.74339 -12.28832 -12.05476 -12.02073 -11.88510 -11.79190 -11.59549 -11.34269 -11.11806 -10.92910 -10.53706 -10.44807 -10.34016 -9.42387 -8.36095 -6.45253 0.92918 1.31357 1.33059 1.56827 1.63758 1.73366 1.98554 2.22333 2.34855 3.01908 3.44822 3.73601 3.79401 3.87202 3.91316 4.00687 4.15396 4.20196 4.24817 4.34178 4.45547 4.52628 4.62427 4.65870 4.73921 4.83442 4.87553 4.96061 4.98048 5.08178 5.10448 5.16178 5.18085 5.25718 5.31782 5.58550 5.63051 5.67939 5.93832 6.41479 6.45231 6.62417 6.70714 7.21555 7.34068 8.79409 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020186 B = 0.005675 C = 0.004924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.741790 B = 4932.496733 C = 5684.896682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.029 3.971 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.290 1.290 6 H -0.209 1.209 7 C -0.501 4.501 8 H 0.027 0.973 9 C 0.177 3.823 10 O -0.368 6.368 11 C 0.456 3.544 12 O -0.527 6.527 13 C -0.074 4.074 14 H 0.118 0.882 15 C -0.093 4.093 16 C -0.028 4.028 17 C 0.076 3.924 18 N -0.314 5.314 19 N -0.474 5.474 20 H 0.454 0.546 21 C 0.078 3.922 22 C -0.256 4.256 23 C -0.025 4.025 24 C -0.144 4.144 25 C -0.110 4.110 26 C -0.128 4.128 27 H 0.267 0.733 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.208 0.792 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.041 0.959 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 5.272 10.981 16.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.170 4.170 3 Si 0.736 3.264 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.131 1.131 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.142 3.858 10 O -0.286 6.286 11 C 0.299 3.701 12 O -0.415 6.415 13 C -0.093 4.093 14 H 0.136 0.864 15 C -0.131 4.131 16 C -0.067 4.067 17 C -0.092 4.092 18 N -0.137 5.137 19 N -0.184 5.184 20 H 0.301 0.699 21 C -0.069 4.069 22 C -0.268 4.268 23 C -0.064 4.064 24 C -0.181 4.181 25 C -0.147 4.147 26 C -0.166 4.166 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.224 0.776 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 11.641 5.080 12.126 17.560 hybrid contribution -1.403 0.824 -0.814 1.819 sum 10.239 5.905 11.312 16.360 Atomic orbital electron populations 1.70086 1.08431 1.28271 1.50455 1.25807 0.95285 1.03043 0.92892 0.86304 0.81763 0.78368 0.79965 1.19039 1.21641 1.13110 1.20769 0.89906 0.92951 1.50182 0.95508 1.21710 0.92603 0.92822 0.78633 1.86525 1.64405 1.61563 1.16075 1.23832 0.77216 0.81841 0.87212 1.90598 1.34533 1.28116 1.88222 1.21130 1.02339 0.97729 0.88097 0.86380 1.21394 1.02256 0.96478 0.92983 1.20169 0.99500 0.90231 0.96823 1.22649 0.98026 0.97982 0.90562 1.76901 1.16267 0.98231 1.22288 1.46302 1.39941 1.21194 1.10959 0.69890 1.22492 0.99163 0.99578 0.85656 1.19971 1.09626 0.99924 0.97236 1.19698 0.97110 0.97208 0.92375 1.23336 0.99923 0.96974 0.97894 1.22413 1.02484 0.94847 0.94993 1.23310 1.00344 0.97968 0.94968 0.92370 0.92318 0.89658 0.87997 0.87416 0.77581 0.93060 0.90918 0.89090 0.93968 0.91307 0.87949 0.92463 0.88033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.63 13.96 21.45 0.30 -58.33 16 2 C 0.03 1.71 5.47 84.65 0.46 2.17 16 3 Si 0.91 42.78 24.75 68.60 1.70 44.48 16 4 H -0.27 -11.81 7.09 99.48 0.70 -11.10 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 6 H -0.21 -9.00 5.66 99.48 0.56 -8.44 16 7 C -0.50 -29.06 7.10 25.60 0.18 -28.88 16 8 H 0.03 1.80 8.05 -2.91 -0.02 1.78 16 9 C 0.18 8.29 0.25 -11.01 0.00 8.28 16 10 O -0.37 -16.40 7.79 -51.34 -0.40 -16.80 16 11 C 0.46 19.84 6.51 71.23 0.46 20.31 16 12 O -0.53 -27.18 14.84 21.95 0.33 -26.86 16 13 C -0.07 -2.40 2.56 -11.40 -0.03 -2.43 16 14 H 0.12 3.27 8.10 -2.39 -0.02 3.25 16 15 C -0.09 -2.58 4.66 30.73 0.14 -2.44 16 16 C -0.03 -0.62 6.31 30.05 0.19 -0.43 16 17 C 0.08 2.00 7.10 43.44 0.31 2.31 16 18 N -0.31 -8.06 12.68 -47.14 -0.60 -8.66 16 19 N -0.47 -9.33 7.37 -57.88 -0.43 -9.75 16 20 H 0.45 5.41 8.96 -213.18 -1.91 3.49 16 21 C 0.08 1.66 11.95 83.34 1.00 2.66 16 22 C -0.26 -7.04 5.89 -20.10 -0.12 -7.15 16 23 C -0.03 -0.83 5.56 30.03 0.17 -0.67 16 24 C -0.14 -5.85 7.11 31.12 0.22 -5.62 16 25 C -0.11 -3.90 7.80 31.12 0.24 -3.65 16 26 C -0.13 -5.00 6.26 31.12 0.19 -4.80 16 27 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.06 1.86 8.10 -2.39 -0.02 1.85 16 29 H 0.08 2.22 8.08 -2.39 -0.02 2.20 16 30 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.21 2.99 8.06 -2.91 -0.02 2.96 16 33 H 0.05 1.97 8.12 -2.39 -0.02 1.95 16 34 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 36 H 0.04 1.90 8.09 -2.39 -0.02 1.88 16 37 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 38 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 39 H 0.06 2.36 6.07 -2.39 -0.01 2.34 16 40 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 Total: -1.00 -77.24 322.73 3.32 -73.92 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -1.00 Total: 22.35 kcal Atomic # 6 Polarization: -23.77 SS G_CDS: 3.42 Total: -20.35 kcal Atomic # 7 Polarization: -76.01 SS G_CDS: -0.73 Total: -76.74 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -0.07 Total: -43.65 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.70 Total: 44.48 kcal Total: -77.24 3.32 -73.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810857212.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.146 kcal (2) G-P(sol) polarization free energy of solvation -77.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds