Wall clock time and date at job start Tue Mar 31 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47531 * 2 1 4 4 C 1.38402 * 119.82419 * 89.99853 * 3 2 1 5 5 C 1.37884 * 120.17081 * 180.02562 * 4 3 2 6 6 C 1.39850 * 119.82381 * 359.97438 * 5 4 3 7 7 C 1.47166 * 120.16746 * 179.97438 * 6 5 4 8 8 O 1.21254 * 120.00434 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99927 * 180.02562 * 7 6 5 10 10 O 1.45194 * 109.47090 * 179.97438 * 9 7 6 11 11 C 1.34233 * 116.99930 * 179.97438 * 10 9 7 12 12 O 1.20825 * 119.99777 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.52994 * 109.47114 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47114 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00034 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00071 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46987 * 60.00002 * 19 17 15 21 21 H 1.48500 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47488 * 299.99684 * 19 17 15 23 23 C 1.39851 * 119.65869 * 0.25300 * 6 5 4 24 24 C 1.37882 * 119.82183 * 359.51662 * 23 6 5 25 25 H 1.09009 * 109.46888 * 59.99885 * 1 2 3 26 26 H 1.08995 * 109.47687 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47477 * 300.00220 * 1 2 3 28 28 H 1.09008 * 109.47009 * 239.99634 * 2 1 3 29 29 H 1.09000 * 109.47146 * 120.00137 * 2 1 3 30 30 H 1.07999 * 119.91107 * 0.02562 * 4 3 2 31 31 H 1.08007 * 120.08622 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.46953 * 299.99616 * 9 7 6 33 33 H 1.09000 * 109.47318 * 59.99214 * 9 7 6 34 34 H 1.09003 * 109.47034 * 300.00045 * 13 11 10 35 35 H 1.08995 * 109.46952 * 60.00188 * 13 11 10 36 36 H 1.08997 * 109.47904 * 300.00487 * 14 13 11 37 37 H 1.09008 * 109.46818 * 60.00458 * 14 13 11 38 38 H 0.97001 * 120.00447 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.08622 * 179.72514 * 23 6 5 40 40 H 1.08001 * 119.91359 * 180.21051 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0698 1.2007 5 6 2.7210 3.3699 1.2091 6 6 2.9554 4.0325 0.0000 7 6 3.4450 5.4203 0.0001 8 8 3.6458 5.9924 1.0502 9 6 3.6957 6.1310 -1.3050 10 8 4.1700 7.4774 -1.0397 11 6 4.4425 8.2484 -2.1042 12 8 4.2893 7.8127 -3.2207 13 6 4.9384 9.6577 -1.9067 14 6 5.1709 10.3122 -3.2699 15 6 5.6662 11.7217 -3.0724 16 1 5.8020 12.1115 -2.0745 17 6 5.9460 12.5137 -4.1659 18 7 5.7811 12.0389 -5.3812 19 14 6.5593 14.2611 -3.9211 20 1 7.8345 14.2361 -3.1605 21 1 6.7850 14.8963 -5.2442 22 1 5.5465 15.0397 -3.1641 23 6 2.7165 3.3714 -1.2091 24 6 2.2619 2.0698 -1.2007 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0807 1.5565 2.1335 31 1 2.8992 3.8751 2.1469 32 1 4.4475 5.5866 -1.8766 33 1 2.7689 6.1786 -1.8767 34 1 4.1956 10.2296 -1.3505 35 1 5.8746 9.6386 -1.3489 36 1 5.9137 9.7402 -3.8258 37 1 4.2348 10.3313 -3.8281 38 1 5.9783 12.5958 -6.1505 39 1 2.8910 3.8781 -2.1468 40 1 2.0802 1.5567 -2.1335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:09 Heat of formation + Delta-G solvation = -119.478201 kcal Electronic energy + Delta-G solvation = -21286.973793 eV Core-core repulsion = 17838.229685 eV Total energy + Delta-G solvation = -3448.744108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.58421 -39.83400 -38.62931 -36.06289 -34.60256 -33.59057 -31.67778 -31.19292 -30.61089 -28.58782 -25.95953 -24.79013 -23.02733 -22.38315 -21.80646 -20.08937 -19.87886 -17.66647 -16.95154 -16.63984 -16.54665 -16.00326 -15.83726 -15.35574 -14.89446 -14.64038 -14.47587 -14.27125 -13.95265 -13.79195 -13.70278 -13.37540 -12.89026 -12.37419 -12.29735 -12.24052 -12.14138 -11.72901 -11.52900 -11.27395 -11.21894 -10.93747 -10.66860 -10.56411 -10.09832 -10.04397 -9.90429 -9.53983 -9.39659 -9.19105 -9.15351 -8.37198 -6.01297 -4.06118 0.28980 0.98452 2.07795 2.74616 2.75722 3.33918 3.38220 3.38428 3.40587 3.87696 4.24491 4.31516 4.45180 4.55383 4.61605 4.85093 4.85479 4.97337 5.03734 5.04073 5.06719 5.10132 5.34098 5.41953 5.44382 5.45407 5.51356 5.61876 5.72922 5.88949 5.99344 6.12622 6.13148 6.20244 6.47568 6.56803 6.87268 7.25798 7.65983 7.72612 7.97764 8.21062 8.37688 9.00612 9.57876 11.09677 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047778 B = 0.002214 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.901336 B =12641.527508 C =13108.791889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.051 4.051 4 C -0.131 4.131 5 C -0.055 4.055 6 C -0.168 4.168 7 C 0.397 3.603 8 O -0.427 6.427 9 C 0.018 3.982 10 O -0.348 6.348 11 C 0.458 3.542 12 O -0.505 6.505 13 C -0.103 4.103 14 C 0.034 3.966 15 C -0.529 4.529 16 H 0.059 0.941 17 C 0.059 3.941 18 N -0.890 5.890 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.070 4.070 24 C -0.129 4.129 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.136 0.864 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.262 0.738 39 H 0.135 0.865 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.418 -25.303 11.504 29.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.128 4.128 3 C -0.051 4.051 4 C -0.149 4.149 5 C -0.073 4.073 6 C -0.169 4.169 7 C 0.272 3.728 8 O -0.299 6.299 9 C -0.057 4.057 10 O -0.266 6.266 11 C 0.302 3.698 12 O -0.392 6.392 13 C -0.140 4.140 14 C -0.004 4.004 15 C -0.567 4.567 16 H 0.077 0.923 17 C -0.143 4.143 18 N -0.528 5.528 19 Si 0.724 3.276 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.088 4.088 24 C -0.147 4.147 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.147 0.853 31 H 0.154 0.846 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.153 0.847 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.350 -25.101 11.531 29.162 hybrid contribution 0.283 0.781 -0.219 0.859 sum -9.067 -24.320 11.312 28.313 Atomic orbital electron populations 1.21753 0.94255 1.02024 1.02490 1.20648 0.96525 0.92282 1.03334 1.20233 0.95509 0.96212 0.93194 1.21024 1.01211 0.94754 0.97918 1.21397 0.94106 0.94035 0.97742 1.20282 1.06524 0.95359 0.94714 1.22240 0.74245 0.86447 0.89870 1.90561 1.38316 1.66788 1.34281 1.23149 1.02245 0.83210 0.97113 1.86674 1.77325 1.23733 1.38841 1.24931 0.73614 0.89155 0.82147 1.90633 1.48792 1.74145 1.25593 1.21797 1.01937 0.85348 1.04933 1.19025 0.98368 0.94605 0.88364 1.21124 1.45183 0.97565 0.92860 0.92294 1.25020 0.95531 0.98615 0.95164 1.69980 1.48267 1.36845 0.97749 0.86585 0.79364 0.84353 0.77253 1.20157 1.21266 1.20153 1.21534 0.95264 0.94615 0.97382 1.21032 1.00967 0.94783 0.97954 0.92328 0.92126 0.92397 0.90587 0.90665 0.85323 0.84643 0.87918 0.87928 0.88736 0.88744 0.95550 0.95555 0.92792 0.84701 0.85195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.89 37.15 0.37 -0.30 16 2 C -0.09 -0.44 6.05 -27.89 -0.17 -0.61 16 3 C -0.05 -0.36 5.14 -104.50 -0.54 -0.90 16 4 C -0.13 -0.98 9.68 -39.65 -0.38 -1.37 16 5 C -0.05 -0.52 9.60 -39.11 -0.38 -0.89 16 6 C -0.17 -1.74 5.87 -105.07 -0.62 -2.36 16 7 C 0.40 5.15 7.20 -30.68 -0.22 4.93 16 8 O -0.43 -6.89 16.50 -14.08 -0.23 -7.12 16 9 C 0.02 0.24 4.56 36.01 0.16 0.40 16 10 O -0.35 -6.13 9.75 -45.91 -0.45 -6.58 16 11 C 0.46 9.14 7.96 36.01 0.29 9.42 16 12 O -0.51 -11.23 15.73 -18.75 -0.29 -11.53 16 13 C -0.10 -2.15 5.75 -27.89 -0.16 -2.31 16 14 C 0.03 0.89 4.26 -27.89 -0.12 0.77 16 15 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 16 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 18 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 19 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 C -0.07 -0.59 9.47 -39.11 -0.37 -0.96 16 24 C -0.13 -0.94 9.68 -39.65 -0.38 -1.32 16 25 H 0.06 0.29 8.14 -51.92 -0.42 -0.14 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.31 8.08 -51.92 -0.42 -0.11 16 29 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 30 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 31 H 0.14 1.26 7.65 -52.48 -0.40 0.85 16 32 H 0.10 1.23 8.09 -51.93 -0.42 0.81 16 33 H 0.10 1.23 8.07 -51.93 -0.42 0.81 16 34 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 35 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 36 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.03 0.75 8.10 -51.92 -0.42 0.33 16 38 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.14 0.95 7.05 -52.49 -0.37 0.58 16 40 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 351.90 15.07 5.30 5.30 Total: -1.00 -34.07 351.90 -8.68 -42.74 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -5.79 Total: -3.96 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.93 Total: -9.11 kcal Atomic # 7 Polarization: -27.05 SS G_CDS: 0.74 Total: -26.31 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.98 Total: -25.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.07 -8.68 -42.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.735 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds