Wall clock time and date at job start Tue Mar 31 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47531 * 2 1 4 4 C 1.38402 * 119.82419 * 89.99853 * 3 2 1 5 5 C 1.37884 * 120.17081 * 180.02562 * 4 3 2 6 6 C 1.39850 * 119.82381 * 359.97438 * 5 4 3 7 7 C 1.47166 * 120.16746 * 179.97438 * 6 5 4 8 8 O 1.21254 * 120.00434 * 359.97438 * 7 6 5 9 9 C 1.50706 * 119.99927 * 180.02562 * 7 6 5 10 10 O 1.45194 * 109.47090 * 179.97438 * 9 7 6 11 11 C 1.34233 * 116.99930 * 179.97438 * 10 9 7 12 12 O 1.20825 * 119.99777 * 0.02562 * 11 10 9 13 13 C 1.50701 * 120.00152 * 179.97438 * 11 10 9 14 14 C 1.52994 * 109.47114 * 179.97438 * 13 11 10 15 15 C 1.50701 * 109.47114 * 179.97438 * 14 13 11 16 16 H 1.07996 * 120.00034 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00071 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99934 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46987 * 60.00002 * 19 17 15 21 21 H 1.48500 * 109.47086 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47488 * 299.99684 * 19 17 15 23 23 C 1.39851 * 119.65869 * 0.25300 * 6 5 4 24 24 C 1.37882 * 119.82183 * 359.51662 * 23 6 5 25 25 H 1.09009 * 109.46888 * 59.99885 * 1 2 3 26 26 H 1.08995 * 109.47687 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47477 * 300.00220 * 1 2 3 28 28 H 1.09008 * 109.47009 * 239.99634 * 2 1 3 29 29 H 1.09000 * 109.47146 * 120.00137 * 2 1 3 30 30 H 1.07999 * 119.91107 * 0.02562 * 4 3 2 31 31 H 1.08007 * 120.08622 * 179.97438 * 5 4 3 32 32 H 1.09001 * 109.46953 * 299.99616 * 9 7 6 33 33 H 1.09000 * 109.47318 * 59.99214 * 9 7 6 34 34 H 1.09003 * 109.47034 * 300.00045 * 13 11 10 35 35 H 1.08995 * 109.46952 * 60.00188 * 13 11 10 36 36 H 1.08997 * 109.47904 * 300.00487 * 14 13 11 37 37 H 1.09008 * 109.46818 * 60.00458 * 14 13 11 38 38 H 0.97001 * 120.00447 * 180.02562 * 18 17 15 39 39 H 1.08002 * 120.08622 * 179.72514 * 23 6 5 40 40 H 1.08001 * 119.91359 * 180.21051 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2618 2.0698 1.2007 5 6 2.7210 3.3699 1.2091 6 6 2.9554 4.0325 0.0000 7 6 3.4450 5.4203 0.0001 8 8 3.6458 5.9924 1.0502 9 6 3.6957 6.1310 -1.3050 10 8 4.1700 7.4774 -1.0397 11 6 4.4425 8.2484 -2.1042 12 8 4.2893 7.8127 -3.2207 13 6 4.9384 9.6577 -1.9067 14 6 5.1709 10.3122 -3.2699 15 6 5.6662 11.7217 -3.0724 16 1 5.8020 12.1115 -2.0745 17 6 5.9460 12.5137 -4.1659 18 7 5.7811 12.0389 -5.3812 19 14 6.5593 14.2611 -3.9211 20 1 7.8345 14.2361 -3.1605 21 1 6.7850 14.8963 -5.2442 22 1 5.5465 15.0397 -3.1641 23 6 2.7165 3.3714 -1.2091 24 6 2.2619 2.0698 -1.2007 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.0807 1.5565 2.1335 31 1 2.8992 3.8751 2.1469 32 1 4.4475 5.5866 -1.8766 33 1 2.7689 6.1786 -1.8767 34 1 4.1956 10.2296 -1.3505 35 1 5.8746 9.6386 -1.3489 36 1 5.9137 9.7402 -3.8258 37 1 4.2348 10.3313 -3.8281 38 1 5.9783 12.5958 -6.1505 39 1 2.8910 3.8781 -2.1468 40 1 2.0802 1.5567 -2.1335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618018.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:08 Heat of formation + Delta-G solvation = -136.983520 kcal Electronic energy + Delta-G solvation = -21287.732880 eV Core-core repulsion = 17838.229685 eV Total energy + Delta-G solvation = -3449.503195 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80068 -40.95626 -39.54989 -37.57763 -35.66020 -35.15226 -33.21939 -32.29909 -31.37764 -29.60134 -27.83030 -25.52217 -24.19733 -23.54207 -22.59879 -21.54438 -20.92425 -19.21731 -18.30995 -17.98502 -17.92323 -17.36768 -16.51401 -16.43812 -16.33170 -16.19586 -15.51168 -15.09038 -14.95488 -14.63405 -14.35410 -14.28494 -14.22446 -13.85147 -13.80184 -13.42139 -13.18258 -12.80542 -12.74186 -12.55138 -12.23194 -12.02788 -11.99578 -11.90346 -11.78243 -11.71396 -11.55823 -11.33368 -10.91512 -10.56956 -10.02014 -9.80353 -8.20192 -6.33776 -0.47988 0.36684 1.14906 1.21417 1.39690 1.45792 1.47438 1.55591 2.42624 2.71647 2.80772 3.13405 3.64175 3.78314 3.85526 3.96041 3.98319 4.00202 4.07312 4.26497 4.37077 4.42413 4.43007 4.51009 4.52909 4.62705 4.86053 4.92618 4.97733 5.10724 5.10953 5.21441 5.26113 5.35230 5.40641 5.46157 5.54619 5.58265 5.79925 5.87943 6.12869 6.26115 6.71011 6.84056 7.36135 8.92088 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.047778 B = 0.002214 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.901336 B =12641.527508 C =13108.791889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.089 4.089 3 C -0.046 4.046 4 C -0.133 4.133 5 C -0.066 4.066 6 C -0.188 4.188 7 C 0.406 3.594 8 O -0.469 6.469 9 C 0.008 3.992 10 O -0.351 6.351 11 C 0.468 3.532 12 O -0.534 6.534 13 C -0.096 4.096 14 C 0.040 3.960 15 C -0.547 4.547 16 H 0.075 0.925 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.974 3.026 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.264 1.264 23 C -0.071 4.071 24 C -0.133 4.133 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.150 0.850 31 H 0.129 0.871 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.114 0.886 36 H -0.007 1.007 37 H -0.007 1.007 38 H 0.264 0.736 39 H 0.147 0.853 40 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.752 -26.407 12.468 30.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.046 4.046 4 C -0.151 4.151 5 C -0.084 4.084 6 C -0.189 4.189 7 C 0.285 3.715 8 O -0.345 6.345 9 C -0.066 4.066 10 O -0.268 6.268 11 C 0.313 3.687 12 O -0.423 6.423 13 C -0.133 4.133 14 C 0.003 3.997 15 C -0.585 4.585 16 H 0.093 0.907 17 C -0.201 4.201 18 N -0.573 5.573 19 Si 0.798 3.202 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.089 4.089 24 C -0.150 4.150 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.168 0.832 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.012 0.988 37 H 0.012 0.988 38 H 0.073 0.927 39 H 0.164 0.836 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -9.693 -26.230 12.522 30.639 hybrid contribution 0.316 0.935 -0.515 1.113 sum -9.377 -25.295 12.007 29.528 Atomic orbital electron populations 1.21752 0.93975 1.02700 1.02061 1.20716 0.96600 0.90823 1.04504 1.20590 0.93926 0.97228 0.92828 1.21273 1.00535 0.93986 0.99269 1.21485 0.94672 0.94976 0.97259 1.20120 1.08728 0.94085 0.96011 1.22453 0.72979 0.87304 0.88811 1.90546 1.40774 1.67896 1.35282 1.23575 1.03522 0.81177 0.98296 1.86614 1.77000 1.25584 1.37587 1.24527 0.73059 0.89052 0.82021 1.90623 1.50197 1.74752 1.26739 1.21548 1.03720 0.86202 1.01875 1.18795 0.95588 0.94611 0.90728 1.21610 1.44855 0.98312 0.93714 0.90669 1.26076 0.95605 1.03660 0.94736 1.70138 1.49537 1.38822 0.98838 0.85368 0.79256 0.78255 0.77342 1.18864 1.21143 1.18856 1.21714 0.94858 0.95230 0.97070 1.21351 1.00207 0.94311 0.99172 0.92759 0.90946 0.92857 0.89433 0.89576 0.83248 0.85289 0.86186 0.86202 0.86781 0.86789 0.98825 0.98837 0.92687 0.83554 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.89 71.98 0.71 -0.26 16 2 C -0.09 -0.60 6.05 29.85 0.18 -0.42 16 3 C -0.05 -0.53 5.14 -19.79 -0.10 -0.63 16 4 C -0.13 -1.77 9.68 22.22 0.22 -1.56 16 5 C -0.07 -1.21 9.60 22.58 0.22 -0.99 16 6 C -0.19 -3.82 5.87 -20.15 -0.12 -3.94 16 7 C 0.41 10.58 7.20 28.03 0.20 10.79 16 8 O -0.47 -15.50 16.50 15.85 0.26 -15.24 16 9 C 0.01 0.22 4.56 71.24 0.32 0.54 16 10 O -0.35 -12.25 9.75 -45.09 -0.44 -12.69 16 11 C 0.47 18.75 7.96 71.24 0.57 19.32 16 12 O -0.53 -24.16 15.73 21.97 0.35 -23.81 16 13 C -0.10 -4.01 5.75 29.85 0.17 -3.84 16 14 C 0.04 2.18 4.26 29.85 0.13 2.31 16 15 C -0.55 -30.90 9.11 25.60 0.23 -30.67 16 16 H 0.08 3.91 7.74 -2.91 -0.02 3.88 16 17 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 18 N -0.93 -57.97 13.29 21.45 0.28 -57.69 16 19 Si 0.97 44.06 29.54 68.60 2.03 46.09 16 20 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 23 C -0.07 -1.10 9.47 22.58 0.21 -0.88 16 24 C -0.13 -1.62 9.68 22.22 0.22 -1.40 16 25 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 26 H 0.07 0.32 8.14 -2.39 -0.02 0.31 16 27 H 0.05 0.40 8.14 -2.38 -0.02 0.39 16 28 H 0.09 0.43 8.08 -2.38 -0.02 0.41 16 29 H 0.09 0.43 8.08 -2.39 -0.02 0.41 16 30 H 0.15 1.30 8.06 -2.91 -0.02 1.27 16 31 H 0.13 2.46 7.65 -2.91 -0.02 2.44 16 32 H 0.12 2.78 8.09 -2.39 -0.02 2.76 16 33 H 0.12 2.78 8.07 -2.39 -0.02 2.76 16 34 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 35 H 0.11 4.30 8.14 -2.39 -0.02 4.28 16 36 H -0.01 -0.40 8.10 -2.39 -0.02 -0.42 16 37 H -0.01 -0.41 8.10 -2.38 -0.02 -0.43 16 38 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.15 1.83 7.05 -2.91 -0.02 1.81 16 40 H 0.15 1.14 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -74.86 351.90 7.12 -67.73 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.03 Total: 6.94 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: 3.62 Total: -11.33 kcal Atomic # 7 Polarization: -57.97 SS G_CDS: 0.28 Total: -57.69 kcal Atomic # 8 Polarization: -51.91 SS G_CDS: 0.17 Total: -51.75 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -74.86 7.12 -67.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618018.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.251 kcal (2) G-P(sol) polarization free energy of solvation -74.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds