Wall clock time and date at job start Tue Mar 31 2020 06:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47187 * 2 1 4 4 H 1.09006 * 109.47360 * 305.00383 * 3 2 1 5 5 O 1.45198 * 109.47092 * 65.00035 * 3 2 1 6 6 C 1.34230 * 117.00173 * 269.99889 * 5 3 2 7 7 O 1.20822 * 120.00010 * 359.97438 * 6 5 3 8 8 C 1.50706 * 119.99763 * 180.02562 * 6 5 3 9 9 C 1.53002 * 109.46925 * 180.02562 * 8 6 5 10 10 C 1.50696 * 109.47300 * 180.02562 * 9 8 6 11 11 H 1.07999 * 119.99822 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00339 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00355 * 179.97438 * 12 10 9 14 14 Si 1.86803 * 119.99771 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47174 * 89.99890 * 14 12 10 16 16 H 1.48506 * 109.46994 * 210.00195 * 14 12 10 17 17 H 1.48504 * 109.46913 * 329.99640 * 14 12 10 18 18 C 1.50695 * 109.47446 * 185.00151 * 3 2 1 19 19 O 1.21255 * 120.00367 * 260.00351 * 18 3 2 20 20 C 1.47167 * 119.99860 * 79.99644 * 18 3 2 21 21 C 1.39849 * 120.17597 * 359.73364 * 20 18 3 22 22 C 1.37882 * 119.82947 * 179.74142 * 21 20 18 23 23 C 1.38405 * 120.17344 * 0.52896 * 22 21 20 24 24 C 1.38411 * 120.34602 * 359.72384 * 23 22 21 25 25 C 1.37888 * 120.17081 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.46793 * 299.99871 * 1 2 3 27 27 H 1.09001 * 109.46982 * 59.99874 * 1 2 3 28 28 H 1.09002 * 109.47197 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46788 * 240.00136 * 2 1 3 30 30 H 1.08997 * 109.47227 * 120.00579 * 2 1 3 31 31 H 1.09000 * 109.47318 * 299.99486 * 8 6 5 32 32 H 1.09000 * 109.47161 * 60.00117 * 8 6 5 33 33 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 34 34 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 35 35 H 0.96991 * 119.99891 * 179.97438 * 13 12 10 36 36 H 1.08007 * 120.08104 * 359.97438 * 21 20 18 37 37 H 1.08002 * 119.91888 * 180.27478 * 22 21 20 38 38 H 1.07997 * 119.83362 * 179.69763 * 23 22 21 39 39 H 1.07993 * 119.91803 * 179.97438 * 24 23 22 40 40 H 1.08006 * 120.08889 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 8 1.6559 2.0916 1.2407 6 6 0.4728 2.7254 1.2560 7 8 -0.2188 2.7377 0.2653 8 6 0.0076 3.4225 2.5085 9 6 -1.3612 4.0591 2.2594 10 6 -1.8261 4.7568 3.5116 11 1 -1.2071 4.7475 4.3965 12 6 -3.0414 5.4079 3.5273 13 7 -3.4474 6.0164 4.6203 14 14 -4.1118 5.4247 1.9965 15 1 -5.0213 4.2509 2.0156 16 1 -4.9154 6.6732 1.9681 17 1 -3.2497 5.3634 0.7890 18 6 3.5419 1.4443 -0.1239 19 8 4.2314 1.5972 0.8618 20 6 4.1718 1.2604 -1.4411 21 6 3.3802 1.0780 -2.5795 22 6 3.9778 0.9117 -3.8110 23 6 5.3575 0.9140 -3.9207 24 6 6.1479 1.0886 -2.7980 25 6 5.5653 1.2613 -1.5602 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 -0.0711 2.6985 3.3195 32 1 0.7247 4.1969 2.7810 33 1 -1.2830 4.7831 1.4483 34 1 -2.0781 3.2845 1.9871 35 1 -4.3021 6.4747 4.6312 36 1 2.3035 1.0713 -2.4948 37 1 3.3678 0.7752 -4.6917 38 1 5.8198 0.7783 -4.8872 39 1 7.2238 1.0888 -2.8915 40 1 6.1834 1.3970 -0.6850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618314.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:32 Heat of formation + Delta-G solvation = -127.086466 kcal Electronic energy + Delta-G solvation = -22485.243950 eV Core-core repulsion = 19036.169923 eV Total energy + Delta-G solvation = -3449.074027 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.10548 -40.89069 -39.23474 -37.75567 -35.65542 -34.97983 -33.39677 -32.42191 -31.95262 -29.41315 -28.14404 -25.02941 -24.03738 -23.48724 -22.74110 -21.46625 -20.94602 -19.51462 -18.68007 -18.24802 -17.77852 -17.45338 -16.66907 -16.35264 -16.13948 -15.95413 -15.46691 -15.36978 -15.05640 -14.91574 -14.66051 -14.41887 -14.09792 -13.62182 -13.51461 -13.36280 -13.19321 -13.05821 -12.93480 -12.65630 -12.27954 -12.08045 -12.05818 -12.02632 -11.80350 -11.67454 -11.48072 -11.40651 -10.79501 -10.75679 -10.02282 -10.00109 -8.32121 -6.37146 -0.47535 0.37713 1.11863 1.19339 1.35198 1.36864 1.48887 1.50828 2.34632 2.71625 2.78081 3.03104 3.57712 3.65196 3.77709 3.79839 3.96058 3.99808 4.18286 4.21865 4.31331 4.33759 4.35086 4.42389 4.48287 4.66627 4.78055 4.83328 4.88581 4.97517 5.02902 5.18226 5.26841 5.28367 5.34310 5.34817 5.41624 5.46558 5.57357 5.90135 6.20232 6.22889 6.66307 6.75197 7.27898 8.83708 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027353 B = 0.003192 C = 0.003116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.420445 B = 8769.405807 C = 8984.813014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.034 3.966 4 H 0.118 0.882 5 O -0.348 6.348 6 C 0.469 3.531 7 O -0.520 6.520 8 C -0.094 4.094 9 C 0.007 3.993 10 C -0.535 4.535 11 H 0.046 0.954 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.943 3.057 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.254 1.254 18 C 0.404 3.596 19 O -0.466 6.466 20 C -0.186 4.186 21 C -0.078 4.078 22 C -0.131 4.131 23 C -0.079 4.079 24 C -0.133 4.133 25 C -0.075 4.075 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.020 0.980 34 H 0.021 0.979 35 H 0.268 0.732 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.714 -15.141 -21.333 31.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.021 4.021 4 H 0.135 0.865 5 O -0.265 6.265 6 C 0.314 3.686 7 O -0.408 6.408 8 C -0.132 4.132 9 C -0.031 4.031 10 C -0.573 4.573 11 H 0.065 0.935 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.767 3.233 15 H -0.191 1.191 16 H -0.205 1.205 17 H -0.178 1.178 18 C 0.282 3.718 19 O -0.341 6.341 20 C -0.187 4.187 21 C -0.096 4.096 22 C -0.149 4.149 23 C -0.097 4.097 24 C -0.151 4.151 25 C -0.093 4.093 26 H 0.048 0.952 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.160 0.840 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 17.753 -14.975 -21.043 31.341 hybrid contribution -0.793 0.458 0.136 0.925 sum 16.960 -14.517 -20.907 30.586 Atomic orbital electron populations 1.21819 0.94138 1.02783 1.01862 1.21903 0.97367 0.91818 1.05175 1.23405 0.94259 0.97040 0.87436 0.86474 1.86668 1.37523 1.63747 1.38541 1.24256 0.78301 0.75042 0.91051 1.90589 1.55215 1.58558 1.36450 1.21359 0.98989 1.00349 0.92477 1.19292 0.92204 0.95679 0.95887 1.21340 1.04279 1.33457 0.98179 0.93531 1.25856 0.99132 0.94317 0.99211 1.70030 1.22240 1.36439 1.29691 0.85761 0.79027 0.78097 0.80451 1.19062 1.20530 1.17839 1.22618 0.89303 0.71241 0.88668 1.90533 1.66292 1.36438 1.40878 1.20194 0.95293 1.09883 0.93306 1.21751 1.00674 0.95254 0.91924 1.21553 0.95759 0.99865 0.97707 1.21919 0.93842 0.94035 0.99888 1.21486 1.01853 1.00216 0.91563 1.21540 0.93182 0.95236 0.99322 0.95247 0.91764 0.90054 0.86568 0.90621 0.87217 0.87532 0.96172 0.96062 0.92269 0.83965 0.82434 0.82229 0.82896 0.85631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.57 71.98 0.62 -2.85 16 2 C -0.13 -2.62 5.48 30.59 0.17 -2.45 16 3 C 0.03 0.90 1.86 29.84 0.06 0.95 16 4 H 0.12 2.92 6.06 -2.38 -0.01 2.91 16 5 O -0.35 -11.74 9.44 -45.29 -0.43 -12.16 16 6 C 0.47 17.29 6.41 71.24 0.46 17.75 16 7 O -0.52 -20.26 13.13 21.98 0.29 -19.97 16 8 C -0.09 -3.76 5.75 29.85 0.17 -3.59 16 9 C 0.01 0.34 3.33 29.85 0.10 0.43 16 10 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 11 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 12 C 0.01 0.75 5.47 84.65 0.46 1.21 16 13 N -0.94 -59.05 13.96 21.45 0.30 -58.75 16 14 Si 0.94 45.37 27.47 68.60 1.88 47.25 16 15 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 18 C 0.40 10.58 6.38 28.03 0.18 10.76 16 19 O -0.47 -15.42 16.61 14.99 0.25 -15.17 16 20 C -0.19 -3.70 5.87 -20.15 -0.12 -3.82 16 21 C -0.08 -1.14 8.83 22.58 0.20 -0.94 16 22 C -0.13 -1.32 10.03 22.23 0.22 -1.09 16 23 C -0.08 -0.69 10.04 22.35 0.22 -0.47 16 24 C -0.13 -1.55 10.03 22.23 0.22 -1.33 16 25 C -0.07 -1.33 9.60 22.58 0.22 -1.11 16 26 H 0.03 0.85 6.06 -2.39 -0.01 0.84 16 27 H 0.06 1.51 7.80 -2.39 -0.02 1.49 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.12 1.66 7.32 -2.38 -0.02 1.64 16 30 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 32 H 0.11 4.07 8.14 -2.39 -0.02 4.05 16 33 H 0.02 0.99 7.16 -2.38 -0.02 0.97 16 34 H 0.02 1.02 7.53 -2.39 -0.02 1.00 16 35 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 36 H 0.14 1.75 6.23 -2.91 -0.02 1.73 16 37 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 38 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 39 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 40 H 0.13 2.38 7.65 -2.91 -0.02 2.36 16 Total: -1.00 -73.69 337.50 6.70 -66.99 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.98 Total: 8.89 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 3.42 Total: -17.07 kcal Atomic # 7 Polarization: -59.05 SS G_CDS: 0.30 Total: -58.75 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: 0.11 Total: -47.30 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.88 Total: 47.25 kcal Total: -73.69 6.70 -66.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618314.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.101 kcal (2) G-P(sol) polarization free energy of solvation -73.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds