Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 6 6 C 1.34229 * 116.99670 * 89.99710 * 5 3 2 7 7 O 1.20819 * 120.00442 * 0.02562 * 6 5 3 8 8 C 1.50708 * 119.99467 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47004 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46998 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99950 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99694 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99749 * 179.97438 * 12 10 9 14 14 Si 1.86790 * 120.00057 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47233 * 89.99842 * 14 12 10 16 16 H 1.48497 * 109.47201 * 210.00059 * 14 12 10 17 17 H 1.48498 * 109.47555 * 330.00061 * 14 12 10 18 18 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 19 19 O 1.21250 * 120.00031 * 105.00200 * 18 3 2 20 20 C 1.47173 * 120.00201 * 285.00083 * 18 3 2 21 21 C 1.39848 * 120.16675 * 359.72784 * 20 18 3 22 22 C 1.37888 * 119.81917 * 179.74020 * 21 20 18 23 23 C 1.38402 * 120.17319 * 0.53168 * 22 21 20 24 24 C 1.38409 * 120.34862 * 359.71965 * 23 22 21 25 25 C 1.37879 * 120.16914 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47054 * 299.99621 * 8 6 5 32 32 H 1.08998 * 109.47040 * 59.99554 * 8 6 5 33 33 H 1.09002 * 109.46791 * 299.99642 * 9 8 6 34 34 H 1.08993 * 109.47159 * 59.99359 * 9 8 6 35 35 H 0.96997 * 119.99606 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.09067 * 359.97438 * 21 20 18 37 37 H 1.08002 * 119.91441 * 180.22372 * 22 21 20 38 38 H 1.08007 * 119.82788 * 179.69577 * 23 22 21 39 39 H 1.07996 * 119.91213 * 179.97438 * 24 23 22 40 40 H 1.07999 * 120.08700 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6559 2.0917 -1.2407 6 6 0.4728 2.7254 -1.2558 7 8 -0.2188 2.7377 -0.2652 8 6 0.0070 3.4217 -2.5087 9 6 -1.3611 4.0596 -2.2590 10 6 -1.8265 4.7564 -3.5116 11 1 -1.2086 4.7449 -4.3972 12 6 -3.0418 5.4075 -3.5272 13 7 -3.4478 6.0160 -4.6201 14 14 -4.1115 5.4253 -1.9960 15 1 -3.7690 6.6085 -1.1666 16 1 -5.5411 5.4953 -2.3917 17 1 -3.8749 4.1864 -1.2123 18 6 3.5419 1.4442 0.1239 19 8 4.2298 1.6871 -0.8446 20 6 4.1738 1.1511 1.4203 21 6 3.3837 0.8760 2.5410 22 6 3.9833 0.5971 3.7509 23 6 5.3629 0.5997 3.8606 24 6 6.1516 0.8761 2.7573 25 6 5.5672 1.1518 1.5393 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 0.7240 4.1959 -2.7820 32 1 -0.0719 2.6971 -3.3191 33 1 -2.0783 3.2857 -1.9855 34 1 -1.2817 4.7842 -1.4487 35 1 -4.3025 6.4744 -4.6309 36 1 2.3069 0.8784 2.4581 37 1 3.3746 0.3809 4.6165 38 1 5.8266 0.3853 4.8122 39 1 7.2275 0.8767 2.8509 40 1 6.1839 1.3677 0.6794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812618315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -109.115694 kcal Electronic energy + Delta-G solvation = -22485.362262 eV Core-core repulsion = 19037.067506 eV Total energy + Delta-G solvation = -3448.294756 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91456 -39.84669 -38.40128 -36.39920 -34.02064 -33.56838 -31.70344 -31.38481 -31.37072 -28.27474 -26.36989 -24.19868 -22.90932 -22.50653 -21.54955 -20.05102 -19.84284 -18.03232 -17.31874 -16.97539 -16.46933 -16.21047 -15.91812 -15.13061 -14.83790 -14.68422 -14.32777 -14.22339 -14.08859 -13.81802 -13.42691 -12.92879 -12.76559 -12.60814 -12.26677 -12.19518 -12.05877 -11.99213 -11.50691 -11.45695 -11.09295 -11.01839 -10.57717 -10.28957 -10.18672 -10.00836 -9.81524 -9.62671 -9.42937 -9.39643 -9.26272 -8.56130 -6.07337 -4.07240 0.26570 0.94046 2.03977 2.61818 2.69775 3.33411 3.38824 3.40358 3.48613 3.74602 4.35212 4.45446 4.50437 4.57573 4.61432 4.70649 4.82412 4.94444 4.95891 5.06527 5.27183 5.30057 5.38163 5.44212 5.54912 5.57787 5.78077 5.87863 5.92449 5.96661 5.99572 6.00409 6.03892 6.26192 6.43573 6.45448 6.73095 7.19552 7.22535 7.29820 7.70112 8.14881 8.46902 8.95419 9.54130 11.05333 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.003173 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.837308 B = 8821.885254 C = 9076.227361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.043 3.957 4 H 0.112 0.888 5 O -0.339 6.339 6 C 0.457 3.543 7 O -0.506 6.506 8 C -0.096 4.096 9 C 0.000 4.000 10 C -0.527 4.527 11 H 0.076 0.924 12 C 0.070 3.930 13 N -0.900 5.900 14 Si 0.878 3.122 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.262 1.262 18 C 0.398 3.602 19 O -0.423 6.423 20 C -0.162 4.162 21 C -0.075 4.075 22 C -0.131 4.131 23 C -0.089 4.089 24 C -0.132 4.132 25 C -0.059 4.059 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.099 0.901 32 H 0.100 0.900 33 H 0.026 0.974 34 H 0.021 0.979 35 H 0.264 0.736 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.130 0.870 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.077 -14.323 17.660 28.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C -0.014 4.014 4 H 0.129 0.871 5 O -0.256 6.256 6 C 0.302 3.698 7 O -0.393 6.393 8 C -0.133 4.133 9 C -0.038 4.038 10 C -0.565 4.565 11 H 0.094 0.906 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.186 1.186 18 C 0.273 3.727 19 O -0.295 6.295 20 C -0.163 4.163 21 C -0.093 4.093 22 C -0.149 4.149 23 C -0.107 4.107 24 C -0.150 4.150 25 C -0.077 4.077 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.118 0.882 32 H 0.118 0.882 33 H 0.044 0.956 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.148 0.852 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 17.096 -14.094 17.365 28.151 hybrid contribution -0.700 0.101 0.941 1.178 sum 16.396 -13.994 18.307 28.281 Atomic orbital electron populations 1.21846 0.93529 1.01884 1.03574 1.21907 0.98123 0.93239 1.03740 1.22980 0.93603 0.95807 0.88981 0.87082 1.86728 1.38658 1.63857 1.36403 1.24833 0.77887 0.75131 0.91987 1.90604 1.54648 1.57860 1.36164 1.21574 1.00897 0.99734 0.91110 1.19476 0.90103 0.96170 0.98036 1.21035 1.04557 1.33377 0.97527 0.90635 1.24960 0.97512 0.94601 0.96063 1.69907 1.21432 1.35070 1.27439 0.86795 0.79557 0.79443 0.83735 1.20189 1.21340 1.18592 1.22329 0.89770 0.73254 0.87384 1.90552 1.65805 1.33848 1.39303 1.20330 0.94659 1.06685 0.94649 1.21598 1.00311 0.95402 0.92009 1.21183 0.95051 1.00917 0.97720 1.21475 0.93973 0.96441 0.98784 1.21181 1.00431 1.00801 0.92604 1.21437 0.93498 0.94554 0.98254 0.92182 0.91539 0.92225 0.89822 0.90318 0.88234 0.88206 0.95566 0.96049 0.92599 0.84755 0.85113 0.85431 0.85190 0.84656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.57 37.16 0.32 -1.54 16 2 C -0.13 -1.47 5.40 -26.74 -0.14 -1.61 16 3 C 0.04 0.57 1.85 -27.89 -0.05 0.52 16 4 H 0.11 1.44 6.33 -51.93 -0.33 1.11 16 5 O -0.34 -5.71 9.40 -45.77 -0.43 -6.14 16 6 C 0.46 8.48 6.41 36.01 0.23 8.71 16 7 O -0.51 -10.04 13.13 -18.74 -0.25 -10.29 16 8 C -0.10 -1.90 5.75 -27.88 -0.16 -2.06 16 9 C 0.00 -0.01 3.33 -27.88 -0.09 -0.10 16 10 C -0.53 -14.90 9.66 -34.44 -0.33 -15.23 16 11 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 12 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 14 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 17 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 18 C 0.40 5.20 6.42 -30.68 -0.20 5.00 16 19 O -0.42 -6.78 16.56 -13.59 -0.23 -7.01 16 20 C -0.16 -1.68 5.84 -105.07 -0.61 -2.29 16 21 C -0.08 -0.63 8.58 -39.11 -0.34 -0.96 16 22 C -0.13 -0.88 10.03 -39.65 -0.40 -1.28 16 23 C -0.09 -0.56 10.04 -39.46 -0.40 -0.95 16 24 C -0.13 -0.93 10.03 -39.65 -0.40 -1.33 16 25 C -0.06 -0.55 9.60 -39.11 -0.38 -0.93 16 26 H 0.06 0.90 6.06 -51.93 -0.31 0.59 16 27 H 0.07 0.84 7.80 -51.93 -0.40 0.43 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.70 6.70 -51.93 -0.35 0.35 16 30 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.10 1.85 8.14 -51.93 -0.42 1.43 16 33 H 0.03 0.65 7.15 -51.93 -0.37 0.28 16 34 H 0.02 0.53 7.53 -51.93 -0.39 0.14 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.13 0.98 6.03 -52.49 -0.32 0.66 16 37 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 38 H 0.13 0.48 8.06 -52.48 -0.42 0.06 16 39 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.14 1.24 7.65 -52.49 -0.40 0.84 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -33.54 336.55 -8.19 -41.73 By element: Atomic # 1 Polarization: 3.65 SS G_CDS: -5.42 Total: -1.77 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -3.04 Total: -12.10 kcal Atomic # 7 Polarization: -27.66 SS G_CDS: 0.77 Total: -26.89 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.90 Total: -23.43 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.54 -8.19 -41.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.386 kcal (2) G-P(sol) polarization free energy of solvation -33.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds