Wall clock time and date at job start Tue Mar 31 2020 06:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 6 6 C 1.34229 * 116.99670 * 89.99710 * 5 3 2 7 7 O 1.20819 * 120.00442 * 0.02562 * 6 5 3 8 8 C 1.50708 * 119.99467 * 180.02562 * 6 5 3 9 9 C 1.53001 * 109.47004 * 180.02562 * 8 6 5 10 10 C 1.50698 * 109.46998 * 179.97438 * 9 8 6 11 11 H 1.07998 * 119.99950 * 0.02562 * 10 9 8 12 12 C 1.37882 * 119.99694 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99749 * 179.97438 * 12 10 9 14 14 Si 1.86790 * 120.00057 * 359.97438 * 12 10 9 15 15 H 1.48500 * 109.47233 * 89.99842 * 14 12 10 16 16 H 1.48497 * 109.47201 * 210.00059 * 14 12 10 17 17 H 1.48498 * 109.47555 * 330.00061 * 14 12 10 18 18 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 19 19 O 1.21250 * 120.00031 * 105.00200 * 18 3 2 20 20 C 1.47173 * 120.00201 * 285.00083 * 18 3 2 21 21 C 1.39848 * 120.16675 * 359.72784 * 20 18 3 22 22 C 1.37888 * 119.81917 * 179.74020 * 21 20 18 23 23 C 1.38402 * 120.17319 * 0.53168 * 22 21 20 24 24 C 1.38409 * 120.34862 * 359.71965 * 23 22 21 25 25 C 1.37879 * 120.16914 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 27 27 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 30 30 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 31 31 H 1.09002 * 109.47054 * 299.99621 * 8 6 5 32 32 H 1.08998 * 109.47040 * 59.99554 * 8 6 5 33 33 H 1.09002 * 109.46791 * 299.99642 * 9 8 6 34 34 H 1.08993 * 109.47159 * 59.99359 * 9 8 6 35 35 H 0.96997 * 119.99606 * 180.02562 * 13 12 10 36 36 H 1.07999 * 120.09067 * 359.97438 * 21 20 18 37 37 H 1.08002 * 119.91441 * 180.22372 * 22 21 20 38 38 H 1.08007 * 119.82788 * 179.69577 * 23 22 21 39 39 H 1.07996 * 119.91213 * 179.97438 * 24 23 22 40 40 H 1.07999 * 120.08700 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 8 1.6559 2.0917 -1.2407 6 6 0.4728 2.7254 -1.2558 7 8 -0.2188 2.7377 -0.2652 8 6 0.0070 3.4217 -2.5087 9 6 -1.3611 4.0596 -2.2590 10 6 -1.8265 4.7564 -3.5116 11 1 -1.2086 4.7449 -4.3972 12 6 -3.0418 5.4075 -3.5272 13 7 -3.4478 6.0160 -4.6201 14 14 -4.1115 5.4253 -1.9960 15 1 -3.7690 6.6085 -1.1666 16 1 -5.5411 5.4953 -2.3917 17 1 -3.8749 4.1864 -1.2123 18 6 3.5419 1.4442 0.1239 19 8 4.2298 1.6871 -0.8446 20 6 4.1738 1.1511 1.4203 21 6 3.3837 0.8760 2.5410 22 6 3.9833 0.5971 3.7509 23 6 5.3629 0.5997 3.8606 24 6 6.1516 0.8761 2.7573 25 6 5.5672 1.1518 1.5393 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 0.7240 4.1959 -2.7820 32 1 -0.0719 2.6971 -3.3191 33 1 -2.0783 3.2857 -1.9855 34 1 -1.2817 4.7842 -1.4487 35 1 -4.3025 6.4744 -4.6309 36 1 2.3069 0.8784 2.4581 37 1 3.3746 0.3809 4.6165 38 1 5.8266 0.3853 4.8122 39 1 7.2275 0.8767 2.8509 40 1 6.1839 1.3677 0.6794 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812618315.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:34 Heat of formation + Delta-G solvation = -127.051168 kcal Electronic energy + Delta-G solvation = -22486.140003 eV Core-core repulsion = 19037.067506 eV Total energy + Delta-G solvation = -3449.072496 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.10725 -40.89219 -39.22990 -37.75783 -35.65625 -35.01047 -33.39950 -32.38890 -31.94854 -29.41699 -28.14425 -25.02289 -24.04601 -23.45173 -22.76555 -21.46760 -20.94988 -19.51384 -18.67400 -18.24355 -17.77722 -17.45800 -16.66919 -16.35544 -16.13083 -15.96901 -15.47536 -15.36242 -15.05377 -14.89857 -14.70093 -14.39780 -14.06646 -13.64092 -13.53188 -13.34555 -13.18980 -13.05571 -12.93673 -12.65682 -12.28162 -12.09039 -12.05228 -12.01054 -11.79976 -11.67160 -11.48177 -11.40796 -10.79708 -10.75755 -10.01936 -9.99712 -8.32229 -6.37195 -0.46951 0.37929 1.13049 1.20924 1.35246 1.36655 1.46275 1.50647 2.34564 2.71882 2.78155 3.03006 3.58185 3.64259 3.77909 3.80153 3.96460 3.99744 4.18537 4.21810 4.31172 4.33731 4.35164 4.42586 4.48544 4.66946 4.78010 4.83595 4.88607 4.97568 5.03150 5.18342 5.26917 5.28512 5.34487 5.34767 5.41934 5.46876 5.57268 5.90402 6.20207 6.23270 6.66288 6.75208 7.27782 8.83603 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.003173 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.837308 B = 8821.885254 C = 9076.227361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C 0.034 3.966 4 H 0.118 0.882 5 O -0.347 6.347 6 C 0.469 3.531 7 O -0.520 6.520 8 C -0.094 4.094 9 C 0.007 3.993 10 C -0.535 4.535 11 H 0.046 0.954 12 C 0.013 3.987 13 N -0.944 5.944 14 Si 0.943 3.057 15 H -0.267 1.267 16 H -0.279 1.279 17 H -0.253 1.253 18 C 0.403 3.597 19 O -0.467 6.467 20 C -0.185 4.185 21 C -0.078 4.078 22 C -0.131 4.131 23 C -0.079 4.079 24 C -0.133 4.133 25 C -0.075 4.075 26 H 0.028 0.972 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.117 0.883 30 H 0.076 0.924 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.022 0.978 34 H 0.018 0.982 35 H 0.268 0.732 36 H 0.143 0.857 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.153 0.847 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.710 -15.859 21.227 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.022 4.022 4 H 0.136 0.864 5 O -0.264 6.264 6 C 0.313 3.687 7 O -0.408 6.408 8 C -0.132 4.132 9 C -0.031 4.031 10 C -0.572 4.572 11 H 0.065 0.935 12 C -0.185 4.185 13 N -0.584 5.584 14 Si 0.767 3.233 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.177 1.177 18 C 0.281 3.719 19 O -0.342 6.342 20 C -0.186 4.186 21 C -0.096 4.096 22 C -0.148 4.148 23 C -0.097 4.097 24 C -0.151 4.151 25 C -0.093 4.093 26 H 0.047 0.953 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.135 0.865 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.041 0.959 34 H 0.037 0.963 35 H 0.077 0.923 36 H 0.161 0.839 37 H 0.176 0.824 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 17.746 -15.647 20.945 31.598 hybrid contribution -0.773 0.527 -0.127 0.944 sum 16.973 -15.120 20.818 30.824 Atomic orbital electron populations 1.21821 0.94182 1.02791 1.01841 1.21927 0.97330 0.91771 1.05252 1.23399 0.94287 0.97025 0.87448 0.86442 1.86670 1.37498 1.63748 1.38527 1.24254 0.78298 0.75044 0.91055 1.90588 1.55215 1.58570 1.36468 1.21358 0.98981 1.00358 0.92475 1.19291 0.92271 0.95726 0.95778 1.21341 1.04307 1.33430 0.98171 0.93531 1.25858 0.99116 0.94304 0.99252 1.70034 1.22278 1.36348 1.29732 0.85757 0.77842 0.79925 0.79795 1.19254 1.20478 1.17705 1.22637 0.89301 0.71824 0.88112 1.90535 1.66381 1.36488 1.40839 1.20178 0.95271 1.09362 0.93796 1.21761 1.00701 0.95147 0.92005 1.21557 0.95724 0.99773 0.97791 1.21919 0.93877 0.94222 0.99673 1.21481 1.01845 0.99938 0.91854 1.21530 0.93189 0.95403 0.99183 0.95295 0.91790 0.90019 0.86478 0.90576 0.87550 0.87215 0.95917 0.96318 0.92271 0.83889 0.82390 0.82234 0.82928 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.57 71.98 0.62 -2.85 16 2 C -0.13 -2.60 5.40 30.59 0.17 -2.43 16 3 C 0.03 0.89 1.85 29.85 0.06 0.95 16 4 H 0.12 2.94 6.33 -2.39 -0.02 2.93 16 5 O -0.35 -11.75 9.40 -45.18 -0.42 -12.17 16 6 C 0.47 17.33 6.41 71.24 0.46 17.79 16 7 O -0.52 -20.32 13.13 21.98 0.29 -20.04 16 8 C -0.09 -3.77 5.75 29.85 0.17 -3.60 16 9 C 0.01 0.33 3.33 29.85 0.10 0.43 16 10 C -0.53 -30.81 9.66 25.60 0.25 -30.56 16 11 H 0.05 2.87 7.99 -2.91 -0.02 2.85 16 12 C 0.01 0.74 5.47 84.66 0.46 1.20 16 13 N -0.94 -59.08 13.96 21.45 0.30 -58.78 16 14 Si 0.94 45.42 27.47 68.60 1.88 47.31 16 15 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.25 -11.77 6.54 99.48 0.65 -11.11 16 18 C 0.40 10.57 6.42 28.03 0.18 10.75 16 19 O -0.47 -15.52 16.56 15.39 0.25 -15.27 16 20 C -0.19 -3.66 5.84 -20.15 -0.12 -3.78 16 21 C -0.08 -1.11 8.58 22.58 0.19 -0.92 16 22 C -0.13 -1.27 10.03 22.23 0.22 -1.05 16 23 C -0.08 -0.67 10.04 22.35 0.22 -0.45 16 24 C -0.13 -1.53 10.03 22.23 0.22 -1.31 16 25 C -0.07 -1.33 9.60 22.57 0.22 -1.11 16 26 H 0.03 0.84 6.06 -2.39 -0.01 0.83 16 27 H 0.06 1.51 7.80 -2.39 -0.02 1.49 16 28 H 0.08 1.50 8.14 -2.38 -0.02 1.49 16 29 H 0.12 1.64 6.70 -2.39 -0.02 1.63 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 32 H 0.11 4.13 8.14 -2.39 -0.02 4.11 16 33 H 0.02 1.11 7.15 -2.39 -0.02 1.09 16 34 H 0.02 0.91 7.53 -2.39 -0.02 0.89 16 35 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 36 H 0.14 1.70 6.03 -2.91 -0.02 1.68 16 37 H 0.16 0.67 8.06 -2.91 -0.02 0.65 16 38 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 40 H 0.13 2.38 7.65 -2.91 -0.02 2.35 16 Total: -1.00 -73.90 336.55 6.70 -67.20 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.98 Total: 8.69 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 3.42 Total: -16.93 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: 0.30 Total: -58.78 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: 0.12 Total: -47.48 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.31 kcal Total: -73.90 6.70 -67.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812618315.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.854 kcal (2) G-P(sol) polarization free energy of solvation -73.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds