Wall clock time and date at job start Tue Mar 31 2020 06:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34918 * 120.00230 * 2 1 4 4 C 1.46234 * 119.99658 * 5.62786 * 3 2 1 5 5 O 1.21623 * 120.00211 * 5.62328 * 4 3 2 6 6 O 1.34909 * 119.99656 * 185.61425 * 4 3 2 7 7 C 1.42905 * 116.99582 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.46960 * 180.02562 * 7 6 4 9 9 O 1.42900 * 109.47284 * 64.99801 * 8 7 6 10 10 C 1.42903 * 114.00113 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47216 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00080 * 359.97438 * 11 10 9 13 13 C 1.37874 * 120.00014 * 179.97438 * 11 10 9 14 14 N 1.31515 * 119.99725 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99952 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47162 * 89.99999 * 15 13 11 17 17 H 1.48507 * 109.47046 * 210.00126 * 15 13 11 18 18 H 1.48501 * 109.47214 * 330.00093 * 15 13 11 19 19 C 1.47179 * 119.99878 * 179.97438 * 2 1 3 20 20 C 1.39853 * 120.17187 * 295.00249 * 19 2 1 21 21 C 1.37882 * 119.82448 * 179.97438 * 20 19 2 22 22 C 1.38408 * 120.17103 * 359.97438 * 21 20 19 23 23 C 1.38410 * 120.34909 * 0.02562 * 22 21 20 24 24 C 1.37881 * 120.17038 * 359.97438 * 23 22 21 25 25 H 1.09000 * 109.46840 * 174.81270 * 1 2 3 26 26 H 1.08996 * 109.47084 * 294.81327 * 1 2 3 27 27 H 1.09000 * 109.46613 * 54.81417 * 1 2 3 28 28 H 1.08000 * 120.00081 * 185.63497 * 3 2 1 29 29 H 1.09001 * 109.47451 * 299.99741 * 7 6 4 30 30 H 1.08999 * 109.47502 * 60.00275 * 7 6 4 31 31 H 1.08995 * 109.47043 * 185.00113 * 8 7 6 32 32 H 1.09000 * 109.46946 * 305.00285 * 8 7 6 33 33 H 1.09003 * 109.46958 * 299.99749 * 10 9 8 34 34 H 1.08999 * 109.47272 * 60.00038 * 10 9 8 35 35 H 0.97007 * 119.99407 * 179.97438 * 14 13 11 36 36 H 1.07995 * 120.08746 * 359.70797 * 20 19 2 37 37 H 1.07994 * 119.91512 * 179.97438 * 21 20 19 38 38 H 1.08001 * 119.82472 * 179.97438 * 22 21 20 39 39 H 1.08003 * 119.91063 * 179.97438 * 23 22 21 40 40 H 1.07999 * 120.08662 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1817 1.1684 0.0000 4 6 1.4558 2.4318 0.1242 5 8 0.2571 2.4267 0.3300 6 8 2.1158 3.6029 0.0107 7 6 1.3438 4.7981 0.1434 8 6 2.2572 6.0153 -0.0143 9 8 2.7808 6.0490 -1.3435 10 6 3.6518 7.1531 -1.5973 11 6 4.1417 7.0895 -3.0211 12 1 3.8204 6.2861 -3.6673 13 6 5.0000 8.0570 -3.4986 14 7 5.3916 9.0352 -2.7115 15 14 5.6078 7.9778 -5.2632 16 1 4.6735 8.7252 -6.1426 17 1 6.9605 8.5847 -5.3485 18 1 5.6728 6.5603 -5.7012 19 6 2.2429 -1.2746 0.0006 20 6 2.1518 -2.1384 1.0967 21 6 2.8438 -3.3309 1.0894 22 6 3.6266 -3.6743 0.0009 23 6 3.7219 -2.8248 -1.0877 24 6 3.0360 -1.6288 -1.0955 25 1 -0.3633 -1.0235 -0.0929 26 1 -0.3633 0.4313 0.9328 27 1 -0.3632 0.5922 -0.8399 28 1 3.2578 1.1706 -0.0918 29 1 0.5732 4.8204 -0.6272 30 1 0.8748 4.8204 1.1271 31 1 1.6867 6.9246 0.1747 32 1 3.0792 5.9474 0.6983 33 1 3.1105 8.0863 -1.4411 34 1 4.5027 7.1085 -0.9176 35 1 5.9958 9.7157 -3.0475 36 1 1.5444 -1.8700 1.9484 37 1 2.7748 -3.9988 1.9353 38 1 4.1666 -4.6096 0.0013 39 1 4.3352 -3.0996 -1.9332 40 1 3.1117 -0.9668 -1.9455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815195013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:41 Heat of formation + Delta-G solvation = -99.809007 kcal Electronic energy + Delta-G solvation = -21429.532929 eV Core-core repulsion = 17981.641742 eV Total energy + Delta-G solvation = -3447.891188 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43257 -39.47046 -37.28163 -36.23465 -34.94205 -32.75937 -31.29335 -30.58660 -29.98131 -28.13034 -26.86586 -24.26278 -22.81191 -22.56307 -22.23490 -21.28284 -19.26207 -17.73556 -16.98252 -16.51312 -16.48138 -15.85161 -15.59491 -15.35668 -15.11323 -14.62316 -14.30350 -14.23262 -13.78991 -13.70133 -13.45428 -13.11756 -12.71850 -12.64080 -12.45317 -11.98206 -11.86747 -11.56499 -11.44819 -11.40047 -10.90195 -10.82929 -10.72643 -10.29207 -10.16500 -10.00225 -9.66484 -9.29104 -9.11837 -8.90267 -8.86113 -8.19955 -6.11167 -4.12710 0.60560 1.07424 1.19148 2.90046 2.96106 3.30770 3.35574 3.41321 3.43114 4.29698 4.33672 4.59124 4.61812 4.74644 4.77534 4.79756 5.07531 5.11205 5.20304 5.25409 5.27747 5.30594 5.50130 5.57350 5.58740 5.69791 5.82043 5.90187 5.92306 6.00927 6.05013 6.11387 6.17347 6.21405 6.27858 6.61140 6.68454 7.06935 7.41169 7.79046 7.93710 8.13743 8.54129 9.00039 9.51986 11.00434 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016692 B = 0.002768 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.069398 B =10111.488143 C =11350.333538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.012 3.988 3 C -0.186 4.186 4 C 0.493 3.507 5 O -0.516 6.516 6 O -0.332 6.332 7 C 0.074 3.926 8 C 0.062 3.938 9 O -0.391 6.391 10 C 0.194 3.806 11 C -0.514 4.514 12 H 0.067 0.933 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.064 4.064 20 C -0.099 4.099 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.100 4.100 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.142 0.858 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.264 0.736 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.677 -23.675 8.672 26.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.011 3.989 3 C -0.205 4.205 4 C 0.341 3.659 5 O -0.408 6.408 6 O -0.248 6.248 7 C -0.001 4.001 8 C -0.016 4.016 9 O -0.311 6.311 10 C 0.120 3.880 11 C -0.552 4.552 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.736 3.264 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.064 4.064 20 C -0.117 4.117 21 C -0.138 4.138 22 C -0.134 4.134 23 C -0.136 4.136 24 C -0.118 4.118 25 H 0.077 0.923 26 H 0.109 0.891 27 H 0.103 0.897 28 H 0.160 0.840 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.068 0.932 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.943 -23.593 8.588 26.050 hybrid contribution 0.469 0.491 -0.641 0.934 sum -6.474 -23.103 7.947 25.274 Atomic orbital electron populations 1.21092 0.89689 1.01901 1.04589 1.21166 0.96311 0.91040 0.90353 1.22079 1.01083 0.88582 1.08745 1.21210 0.85748 0.85262 0.73726 1.90835 1.15776 1.88443 1.45720 1.86298 1.42170 1.14337 1.81962 1.22810 0.94238 0.81348 1.01661 1.22323 0.96564 0.94177 0.88496 1.87917 1.65852 1.51311 1.25985 1.20237 0.87551 0.83255 0.96967 1.21052 1.27504 1.10626 0.96067 0.91515 1.24953 0.95997 0.95004 0.98588 1.69967 1.34412 1.13453 1.35994 0.86323 0.77942 0.78445 0.83708 1.20465 1.21060 1.19591 1.18878 0.98175 0.93815 0.95488 1.21236 0.99376 0.93619 0.97506 1.21084 0.97412 0.96695 0.98648 1.21304 0.98668 0.99668 0.93761 1.21135 0.99472 0.94318 0.98703 1.21420 0.95612 0.96987 0.97751 0.92252 0.89136 0.89730 0.83994 0.90787 0.90760 0.92035 0.93239 0.97619 0.97490 0.92644 0.85612 0.85712 0.85926 0.85573 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.21 8.32 36.01 0.30 -0.91 16 2 C 0.01 0.13 5.48 -102.17 -0.56 -0.43 16 3 C -0.19 -2.34 9.76 -37.55 -0.37 -2.71 16 4 C 0.49 7.60 7.81 33.94 0.26 7.86 16 5 O -0.52 -8.31 13.02 -19.36 -0.25 -8.56 16 6 O -0.33 -5.81 10.09 -44.18 -0.45 -6.26 16 7 C 0.07 1.21 5.76 37.16 0.21 1.43 16 8 C 0.06 1.17 6.32 37.16 0.23 1.40 16 9 O -0.39 -9.68 10.29 -40.08 -0.41 -10.09 16 10 C 0.19 5.39 5.69 36.01 0.20 5.59 16 11 C -0.51 -15.35 9.43 -34.44 -0.32 -15.67 16 12 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 15 Si 0.91 21.99 29.54 -169.99 -5.02 16.97 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 C -0.06 -0.62 5.23 -105.06 -0.55 -1.17 16 20 C -0.10 -0.84 9.78 -39.11 -0.38 -1.22 16 21 C -0.12 -0.88 10.03 -39.65 -0.40 -1.28 16 22 C -0.12 -0.84 10.04 -39.46 -0.40 -1.23 16 23 C -0.12 -0.93 10.03 -39.65 -0.40 -1.33 16 24 C -0.10 -0.92 9.73 -39.11 -0.38 -1.30 16 25 H 0.06 0.50 7.99 -51.93 -0.42 0.09 16 26 H 0.09 0.99 7.12 -51.93 -0.37 0.62 16 27 H 0.08 0.98 7.43 -51.93 -0.39 0.59 16 28 H 0.14 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.07 1.24 8.13 -51.93 -0.42 0.82 16 30 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 37 H 0.12 0.64 8.06 -52.49 -0.42 0.21 16 38 H 0.12 0.62 8.06 -52.49 -0.42 0.19 16 39 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 LS Contribution 352.25 15.07 5.31 5.31 Total: -1.00 -33.30 352.25 -8.51 -41.81 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -5.79 Total: -3.45 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -2.64 Total: -9.44 kcal Atomic # 7 Polarization: -27.03 SS G_CDS: 0.74 Total: -26.29 kcal Atomic # 8 Polarization: -23.79 SS G_CDS: -1.11 Total: -24.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.30 -8.51 -41.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.000 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds