Wall clock time and date at job start Tue Mar 31 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34919 * 119.99847 * 2 1 4 4 C 1.46233 * 119.99725 * 179.97438 * 3 2 1 5 5 O 1.21621 * 120.00344 * 0.02562 * 4 3 2 6 6 O 1.34905 * 119.99884 * 180.02562 * 4 3 2 7 7 C 1.42894 * 117.00236 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47734 * 179.97438 * 7 6 4 9 9 O 1.42896 * 109.46903 * 64.99503 * 8 7 6 10 10 C 1.42907 * 114.00250 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47154 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00359 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99704 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99761 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99736 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47201 * 59.99855 * 15 13 11 17 17 H 1.48500 * 109.46840 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47389 * 299.99657 * 15 13 11 19 19 C 1.47177 * 119.99856 * 179.97438 * 2 1 3 20 20 C 1.39849 * 120.16840 * 114.73140 * 19 2 1 21 21 C 1.37885 * 119.82471 * 179.71937 * 20 19 2 22 22 C 1.38414 * 120.16940 * 0.55205 * 21 20 19 23 23 C 1.38408 * 120.34695 * 359.71906 * 22 21 20 24 24 C 1.37885 * 120.17236 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47152 * 90.00048 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00148 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00129 * 1 2 3 28 28 H 1.07999 * 120.00309 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47395 * 299.99722 * 7 6 4 30 30 H 1.09004 * 109.47173 * 59.99577 * 7 6 4 31 31 H 1.09000 * 109.47548 * 184.99877 * 8 7 6 32 32 H 1.09005 * 109.46648 * 305.00525 * 8 7 6 33 33 H 1.08995 * 109.46753 * 300.00298 * 10 9 8 34 34 H 1.09000 * 109.46479 * 60.00147 * 10 9 8 35 35 H 0.97005 * 119.99579 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.08944 * 359.97056 * 20 19 2 37 37 H 1.08001 * 119.92047 * 180.29128 * 21 20 19 38 38 H 1.07996 * 119.82576 * 179.69869 * 22 21 20 39 39 H 1.08001 * 119.91634 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.08879 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1816 1.1685 0.0000 4 6 3.6439 1.1684 0.0006 5 8 4.2521 0.1152 0.0006 6 8 4.3184 2.3367 0.0011 7 6 5.7454 2.2620 0.0011 8 6 6.3303 3.6758 0.0010 9 8 5.9862 4.3336 1.2220 10 6 6.4862 5.6685 1.3241 11 6 6.0666 6.2625 2.6440 12 1 5.4767 5.6792 3.3356 13 6 6.4349 7.5510 2.9683 14 7 7.1519 8.2618 2.1255 15 14 5.9142 8.2876 4.6040 16 1 6.4634 7.4675 5.7134 17 1 6.4339 9.6746 4.7101 18 1 4.4317 8.3061 4.6891 19 6 2.2429 -1.2746 0.0006 20 6 3.0323 -1.6308 -1.0974 21 6 3.7233 -2.8240 -1.0870 22 6 3.6280 -3.6735 0.0017 23 6 2.8443 -3.3306 1.0897 24 6 2.1523 -2.1380 1.0970 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6416 2.1038 0.0004 29 1 6.0815 1.7295 0.8908 30 1 6.0814 1.7302 -0.8892 31 1 7.4152 3.6203 -0.0885 32 1 5.9244 4.2369 -0.8408 33 1 7.5743 5.6546 1.2618 34 1 6.0832 6.2706 0.5098 35 1 7.4113 9.1682 2.3538 36 1 3.1038 -0.9713 -1.9497 37 1 4.3372 -3.0985 -1.9321 38 1 4.1678 -4.6089 0.0020 39 1 2.7746 -3.9988 1.9353 40 1 1.5408 -1.8720 1.9465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815195017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:43 Heat of formation + Delta-G solvation = -93.047800 kcal Electronic energy + Delta-G solvation = -21938.805104 eV Core-core repulsion = 18491.207104 eV Total energy + Delta-G solvation = -3447.598000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.48047 -39.13149 -37.09991 -36.12369 -35.06077 -32.75571 -31.00190 -30.46987 -29.89789 -28.39102 -26.86417 -23.79752 -22.68123 -22.49209 -22.24464 -21.30291 -19.10759 -17.86612 -16.99259 -16.47240 -16.41270 -15.98973 -15.28795 -15.09577 -14.83325 -14.48772 -14.30884 -14.12306 -13.77303 -13.59410 -13.38320 -12.98489 -12.81986 -12.60560 -12.41630 -12.29576 -11.88874 -11.39716 -11.25417 -11.20483 -10.90081 -10.82762 -10.71428 -10.37423 -10.25435 -10.03151 -9.55376 -9.12699 -8.92457 -8.85593 -8.45129 -8.19514 -6.10835 -4.12478 0.68704 1.37008 1.47652 2.94186 3.03982 3.33029 3.35303 3.39551 3.72019 4.32859 4.33816 4.67041 4.77964 4.83786 4.90493 5.00908 5.10893 5.15678 5.22240 5.25593 5.29851 5.35492 5.50549 5.52179 5.57001 5.74644 5.90322 5.91754 5.95805 6.00785 6.07689 6.19358 6.39666 6.42270 6.46916 6.71026 6.92027 7.07175 7.41401 7.79148 8.00211 8.14097 8.54689 9.00042 9.52141 11.00742 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.002814 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.999635 B = 9946.100019 C =10335.306915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.006 3.994 3 C -0.184 4.184 4 C 0.486 3.514 5 O -0.502 6.502 6 O -0.334 6.334 7 C 0.075 3.925 8 C 0.063 3.937 9 O -0.391 6.391 10 C 0.195 3.805 11 C -0.516 4.516 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.909 3.091 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.057 4.057 20 C -0.055 4.055 21 C -0.124 4.124 22 C -0.115 4.115 23 C -0.127 4.127 24 C -0.103 4.103 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.146 0.854 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.006 0.994 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.113 0.887 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.793 -21.431 -7.724 25.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.005 3.995 3 C -0.203 4.203 4 C 0.332 3.668 5 O -0.393 6.393 6 O -0.250 6.250 7 C 0.001 3.999 8 C -0.015 4.015 9 O -0.311 6.311 10 C 0.120 3.880 11 C -0.554 4.554 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.736 3.264 16 H -0.200 1.200 17 H -0.211 1.211 18 H -0.200 1.200 19 C -0.057 4.057 20 C -0.073 4.073 21 C -0.142 4.142 22 C -0.133 4.133 23 C -0.145 4.145 24 C -0.121 4.121 25 H 0.102 0.898 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.164 0.836 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.024 0.976 34 H 0.025 0.975 35 H 0.074 0.926 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.135 0.865 39 H 0.138 0.862 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.591 -21.605 -7.594 25.667 hybrid contribution 0.333 0.736 0.611 1.013 sum -11.258 -20.869 -6.983 24.719 Atomic orbital electron populations 1.20979 0.89489 1.03877 1.03401 1.21244 0.95889 0.91586 0.90744 1.22190 0.90363 0.99192 1.08563 1.21353 0.89873 0.81997 0.73564 1.90938 1.70722 1.31857 1.45793 1.86284 1.22029 1.33424 1.83235 1.22769 0.76768 0.98168 1.02206 1.22321 0.97626 0.91142 0.90419 1.87919 1.77452 1.30812 1.34890 1.20228 0.93455 0.76775 0.97498 1.21022 1.33984 0.98332 1.02032 0.91556 1.24950 0.95091 0.96582 0.97870 1.69954 1.37421 1.10493 1.35979 0.86377 0.79042 0.77861 0.83089 1.20006 1.21146 1.19965 1.18752 0.98131 0.93306 0.95491 1.20965 0.93913 0.95382 0.97006 1.20939 0.99780 0.94756 0.98714 1.21162 0.98749 0.99501 0.93900 1.20944 0.98115 0.96953 0.98465 1.21086 0.99905 0.93846 0.97253 0.89780 0.90225 0.90579 0.83583 0.90901 0.90900 0.92106 0.93280 0.97640 0.97509 0.92581 0.86861 0.86332 0.86459 0.86233 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.03 36.01 0.36 -0.45 16 2 C 0.01 0.06 5.49 -102.17 -0.56 -0.50 16 3 C -0.18 -2.24 9.80 -37.55 -0.37 -2.61 16 4 C 0.49 7.59 7.75 33.94 0.26 7.85 16 5 O -0.50 -8.38 11.99 -19.36 -0.23 -8.62 16 6 O -0.33 -5.89 10.09 -44.17 -0.45 -6.34 16 7 C 0.08 1.26 5.76 37.16 0.21 1.48 16 8 C 0.06 1.19 6.32 37.16 0.23 1.43 16 9 O -0.39 -9.78 10.29 -40.08 -0.41 -10.19 16 10 C 0.19 5.43 5.69 36.01 0.20 5.64 16 11 C -0.52 -15.46 9.43 -34.44 -0.32 -15.78 16 12 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 15 Si 0.91 22.05 29.54 -169.99 -5.02 17.03 16 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.06 -0.66 3.82 -105.06 -0.40 -1.07 16 20 C -0.05 -0.65 6.98 -39.11 -0.27 -0.92 16 21 C -0.12 -1.35 10.03 -39.65 -0.40 -1.75 16 22 C -0.12 -1.18 10.04 -39.45 -0.40 -1.57 16 23 C -0.13 -1.30 10.03 -39.65 -0.40 -1.70 16 24 C -0.10 -1.13 9.70 -39.11 -0.38 -1.50 16 25 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 27 H 0.08 0.45 8.02 -51.93 -0.42 0.03 16 28 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.07 1.27 8.13 -51.93 -0.42 0.85 16 30 H 0.07 1.03 8.13 -51.93 -0.42 0.61 16 31 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 33 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 34 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.11 1.29 8.05 -52.49 -0.42 0.86 16 37 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 350.38 15.07 5.28 5.28 Total: -1.00 -34.23 350.38 -8.29 -42.52 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.88 Total: -3.41 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.32 Total: -9.91 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -1.09 Total: -25.15 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.23 -8.29 -42.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.532 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds