Wall clock time and date at job start Tue Mar 31 2020 06:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34919 * 119.99847 * 2 1 4 4 C 1.46233 * 119.99725 * 179.97438 * 3 2 1 5 5 O 1.21621 * 120.00344 * 0.02562 * 4 3 2 6 6 O 1.34905 * 119.99884 * 180.02562 * 4 3 2 7 7 C 1.42894 * 117.00236 * 180.02562 * 6 4 3 8 8 C 1.53003 * 109.47734 * 179.97438 * 7 6 4 9 9 O 1.42896 * 109.46903 * 64.99503 * 8 7 6 10 10 C 1.42907 * 114.00250 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47154 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00359 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99704 * 180.02562 * 11 10 9 14 14 N 1.31512 * 119.99761 * 0.02562 * 13 11 10 15 15 Si 1.86794 * 119.99736 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47201 * 59.99855 * 15 13 11 17 17 H 1.48500 * 109.46840 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47389 * 299.99657 * 15 13 11 19 19 C 1.47177 * 119.99856 * 179.97438 * 2 1 3 20 20 C 1.39849 * 120.16840 * 114.73140 * 19 2 1 21 21 C 1.37885 * 119.82471 * 179.71937 * 20 19 2 22 22 C 1.38414 * 120.16940 * 0.55205 * 21 20 19 23 23 C 1.38408 * 120.34695 * 359.71906 * 22 21 20 24 24 C 1.37885 * 120.17236 * 359.97438 * 23 22 21 25 25 H 1.09002 * 109.47152 * 90.00048 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.00148 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.00129 * 1 2 3 28 28 H 1.07999 * 120.00309 * 0.02562 * 3 2 1 29 29 H 1.09000 * 109.47395 * 299.99722 * 7 6 4 30 30 H 1.09004 * 109.47173 * 59.99577 * 7 6 4 31 31 H 1.09000 * 109.47548 * 184.99877 * 8 7 6 32 32 H 1.09005 * 109.46648 * 305.00525 * 8 7 6 33 33 H 1.08995 * 109.46753 * 300.00298 * 10 9 8 34 34 H 1.09000 * 109.46479 * 60.00147 * 10 9 8 35 35 H 0.97005 * 119.99579 * 180.02562 * 14 13 11 36 36 H 1.08000 * 120.08944 * 359.97056 * 20 19 2 37 37 H 1.08001 * 119.92047 * 180.29128 * 21 20 19 38 38 H 1.07996 * 119.82576 * 179.69869 * 22 21 20 39 39 H 1.08001 * 119.91634 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.08879 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1816 1.1685 0.0000 4 6 3.6439 1.1684 0.0006 5 8 4.2521 0.1152 0.0006 6 8 4.3184 2.3367 0.0011 7 6 5.7454 2.2620 0.0011 8 6 6.3303 3.6758 0.0010 9 8 5.9862 4.3336 1.2220 10 6 6.4862 5.6685 1.3241 11 6 6.0666 6.2625 2.6440 12 1 5.4767 5.6792 3.3356 13 6 6.4349 7.5510 2.9683 14 7 7.1519 8.2618 2.1255 15 14 5.9142 8.2876 4.6040 16 1 6.4634 7.4675 5.7134 17 1 6.4339 9.6746 4.7101 18 1 4.4317 8.3061 4.6891 19 6 2.2429 -1.2746 0.0006 20 6 3.0323 -1.6308 -1.0974 21 6 3.7233 -2.8240 -1.0870 22 6 3.6280 -3.6735 0.0017 23 6 2.8443 -3.3306 1.0897 24 6 2.1523 -2.1380 1.0970 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3633 0.8900 0.5138 27 1 -0.3633 -0.8900 0.5139 28 1 1.6416 2.1038 0.0004 29 1 6.0815 1.7295 0.8908 30 1 6.0814 1.7302 -0.8892 31 1 7.4152 3.6203 -0.0885 32 1 5.9244 4.2369 -0.8408 33 1 7.5743 5.6546 1.2618 34 1 6.0832 6.2706 0.5098 35 1 7.4113 9.1682 2.3538 36 1 3.1038 -0.9713 -1.9497 37 1 4.3372 -3.0985 -1.9321 38 1 4.1678 -4.6089 0.0020 39 1 2.7746 -3.9988 1.9353 40 1 1.5408 -1.8720 1.9465 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815195017.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:43 Heat of formation + Delta-G solvation = -112.178537 kcal Electronic energy + Delta-G solvation = -21939.634675 eV Core-core repulsion = 18491.207104 eV Total energy + Delta-G solvation = -3448.427571 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.63520 -40.05747 -38.74196 -37.53428 -35.96431 -34.95977 -31.87820 -31.79967 -30.84885 -29.44006 -28.78710 -24.85979 -24.49859 -23.70106 -23.35112 -22.51735 -20.01229 -18.99886 -18.70200 -18.00746 -17.87640 -17.12077 -16.90208 -16.44255 -16.23568 -15.86385 -15.63509 -15.23508 -14.89482 -14.49590 -14.36334 -14.16928 -13.95272 -13.74837 -13.57511 -13.32796 -13.15724 -12.98645 -12.93572 -12.69740 -12.44776 -12.07863 -12.00861 -11.93292 -11.65418 -11.46453 -11.30785 -10.90843 -10.40343 -10.29737 -9.75090 -9.31643 -8.33538 -6.46214 -0.22679 0.53347 0.63922 1.39632 1.44599 1.53071 1.79546 1.93666 2.33832 2.90114 3.00193 3.04447 3.53785 3.74200 3.93284 4.04983 4.08436 4.09990 4.26355 4.27455 4.39708 4.46597 4.51067 4.58622 4.63287 4.67558 4.79420 4.82888 4.92433 5.03992 5.15049 5.16305 5.22602 5.34536 5.48061 5.52626 5.58046 5.62386 5.65229 5.93213 6.13105 6.47842 6.76346 6.81439 7.25361 8.78594 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023406 B = 0.002814 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.999635 B = 9946.100019 C =10335.306915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.033 3.967 3 C -0.215 4.215 4 C 0.481 3.519 5 O -0.520 6.520 6 O -0.356 6.356 7 C 0.081 3.919 8 C 0.055 3.945 9 O -0.410 6.410 10 C 0.208 3.792 11 C -0.553 4.553 12 H 0.060 0.940 13 C 0.008 3.992 14 N -0.929 5.929 15 Si 0.984 3.016 16 H -0.266 1.266 17 H -0.273 1.273 18 H -0.265 1.265 19 C -0.078 4.078 20 C -0.073 4.073 21 C -0.136 4.136 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.115 4.115 25 H 0.102 0.898 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.161 0.839 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.056 0.944 33 H -0.008 1.008 34 H -0.010 1.010 35 H 0.272 0.728 36 H 0.109 0.891 37 H 0.132 0.868 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 -22.251 -6.888 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.032 3.968 3 C -0.233 4.233 4 C 0.329 3.671 5 O -0.412 6.412 6 O -0.272 6.272 7 C 0.007 3.993 8 C -0.022 4.022 9 O -0.330 6.330 10 C 0.133 3.867 11 C -0.591 4.591 12 H 0.078 0.922 13 C -0.191 4.191 14 N -0.568 5.568 15 Si 0.806 3.194 16 H -0.191 1.191 17 H -0.198 1.198 18 H -0.189 1.189 19 C -0.078 4.078 20 C -0.091 4.091 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.151 4.151 24 C -0.133 4.133 25 H 0.120 0.880 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.178 0.822 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.009 0.991 34 H 0.007 0.993 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.160 0.840 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.873 -22.446 -6.779 26.749 hybrid contribution 0.727 0.835 0.262 1.138 sum -12.146 -21.611 -6.517 25.632 Atomic orbital electron populations 1.21119 0.86563 1.05146 1.04826 1.21650 0.97694 0.90417 0.87000 1.22245 0.88425 1.00615 1.12042 1.21975 0.91065 0.81149 0.72904 1.90921 1.71288 1.32014 1.46947 1.86276 1.22207 1.34960 1.83803 1.22684 0.76984 0.96498 1.03110 1.22642 0.99216 0.91969 0.88356 1.87865 1.77680 1.29503 1.37972 1.19875 0.92343 0.78070 0.96382 1.21362 1.35213 0.99473 1.03030 0.92203 1.25964 0.94476 0.96595 1.02075 1.70055 1.37728 1.11037 1.38008 0.85226 0.79060 0.77319 0.77768 1.19075 1.19767 1.18948 1.19029 0.98753 0.94111 0.95940 1.21079 0.94674 0.96007 0.97326 1.21222 0.99844 0.94693 0.99642 1.21505 0.98671 1.00242 0.93552 1.21304 0.97568 0.97088 0.99187 1.21367 1.00333 0.94078 0.97478 0.87985 0.88895 0.89328 0.82173 0.91880 0.87990 0.90200 0.92589 0.99050 0.99263 0.91922 0.87301 0.84967 0.84224 0.83995 0.84766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.33 10.03 71.24 0.71 -0.62 16 2 C 0.03 0.65 5.49 -18.28 -0.10 0.55 16 3 C -0.21 -5.14 9.80 23.59 0.23 -4.91 16 4 C 0.48 15.19 7.75 69.90 0.54 15.73 16 5 O -0.52 -17.50 11.99 19.44 0.23 -17.27 16 6 O -0.36 -12.75 10.09 -55.22 -0.56 -13.31 16 7 C 0.08 2.75 5.76 71.98 0.41 3.16 16 8 C 0.05 2.11 6.32 71.98 0.45 2.57 16 9 O -0.41 -21.02 10.29 -144.34 -1.49 -22.51 16 10 C 0.21 11.97 5.69 71.24 0.41 12.37 16 11 C -0.55 -33.75 9.43 25.60 0.24 -33.51 16 12 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 13 C 0.01 0.44 5.46 84.66 0.46 0.91 16 14 N -0.93 -56.23 13.29 21.45 0.28 -55.95 16 15 Si 0.98 44.79 29.54 68.60 2.03 46.81 16 16 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 18 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 19 C -0.08 -1.77 3.82 -20.15 -0.08 -1.85 16 20 C -0.07 -1.71 6.98 22.58 0.16 -1.55 16 21 C -0.14 -2.88 10.03 22.23 0.22 -2.65 16 22 C -0.12 -2.31 10.04 22.35 0.22 -2.09 16 23 C -0.13 -2.52 10.03 22.23 0.22 -2.30 16 24 C -0.11 -2.36 9.70 22.58 0.22 -2.14 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.09 0.83 8.08 -2.39 -0.02 0.82 16 27 H 0.09 0.80 8.02 -2.38 -0.02 0.78 16 28 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 29 H 0.06 2.23 8.13 -2.39 -0.02 2.21 16 30 H 0.10 2.82 8.13 -2.38 -0.02 2.80 16 31 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 33 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 34 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 35 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 36 H 0.11 2.53 8.05 -2.91 -0.02 2.51 16 37 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 38 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.13 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -74.18 350.38 5.85 -68.33 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.01 Total: 10.21 kcal Atomic # 6 Polarization: -20.65 SS G_CDS: 4.34 Total: -16.32 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.28 Total: -55.95 kcal Atomic # 8 Polarization: -51.28 SS G_CDS: -1.81 Total: -53.09 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -74.18 5.85 -68.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815195017.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.853 kcal (2) G-P(sol) polarization free energy of solvation -74.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds