Wall clock time and date at job start Tue Mar 31 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48502 * 109.47033 * 269.99828 * 3 2 1 5 5 H 1.48506 * 109.47354 * 29.99969 * 3 2 1 6 6 H 1.48507 * 109.47273 * 149.99849 * 3 2 1 7 7 C 1.37876 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47223 * 304.99930 * 12 11 10 14 14 O 1.42900 * 109.47139 * 65.00304 * 12 11 10 15 15 C 1.53008 * 109.46744 * 185.00131 * 12 11 10 16 16 O 1.42894 * 109.46781 * 175.00274 * 15 12 11 17 17 C 1.35879 * 117.00217 * 180.02562 * 16 15 12 18 18 C 1.38171 * 120.21671 * 359.72349 * 17 16 15 19 19 C 1.38751 * 120.30915 * 179.66636 * 18 17 16 20 20 C 1.37755 * 120.72504 * 0.65696 * 19 18 17 21 21 C 1.39182 * 120.02375 * 359.63697 * 20 19 18 22 22 N 1.37686 * 133.38651 * 180.02562 * 21 20 19 23 23 H 0.96998 * 125.07017 * 0.02562 * 22 21 20 24 24 C 1.36941 * 109.86738 * 180.02562 * 22 21 20 25 25 C 1.34207 * 109.89307 * 359.97438 * 24 22 21 26 26 C 1.40013 * 120.22708 * 179.97438 * 17 16 15 27 27 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 29 29 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 30 30 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 31 31 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 32 32 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 33 33 H 0.96697 * 114.00040 * 59.99197 * 14 12 11 34 34 H 1.09005 * 109.46614 * 294.99810 * 15 12 11 35 35 H 1.08993 * 109.46898 * 55.00161 * 15 12 11 36 36 H 1.07992 * 119.84430 * 359.97438 * 18 17 16 37 37 H 1.08005 * 119.63320 * 180.32034 * 19 18 17 38 38 H 1.07998 * 119.99152 * 179.66616 * 20 19 18 39 39 H 1.07994 * 125.04852 * 180.02562 * 24 22 21 40 40 H 1.08002 * 126.50324 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 6 5.9409 -4.0740 0.0027 13 1 5.4914 -4.6012 0.8442 14 8 5.5470 -4.7026 -1.2187 15 6 7.4651 -4.1165 0.1296 16 8 7.8955 -5.4740 0.2471 17 6 9.2316 -5.6891 0.3698 18 6 10.1103 -4.6229 0.3715 19 6 11.4744 -4.8399 0.5036 20 6 11.9756 -6.1176 0.6212 21 6 11.1109 -7.2082 0.6160 22 7 11.3030 -8.5681 0.7138 23 1 12.1642 -9.0037 0.8111 24 6 10.0970 -9.2140 0.6532 25 6 9.1060 -8.3191 0.5181 26 6 9.7274 -6.9930 0.4900 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8752 -0.6804 -0.8888 30 1 3.6259 -3.0953 -0.7806 31 1 5.8473 -2.1141 -0.8873 32 1 5.8459 -2.1147 0.8927 33 1 5.9110 -4.2850 -2.0112 34 1 7.9160 -3.6676 -0.7555 35 1 7.7715 -3.5602 1.0154 36 1 9.7333 -3.6156 0.2747 37 1 12.1510 -3.9981 0.5088 38 1 13.0400 -6.2732 0.7180 39 1 9.9633 -10.2843 0.7070 40 1 8.0505 -8.5357 0.4438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819269998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:54 Heat of formation + Delta-G solvation = -27.691712 kcal Electronic energy + Delta-G solvation = -21780.225976 eV Core-core repulsion = 18367.754780 eV Total energy + Delta-G solvation = -3412.471196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.47138 -39.49162 -37.58699 -36.12076 -34.76668 -32.40487 -31.81535 -30.39610 -29.50842 -28.56677 -27.41158 -24.60322 -22.66194 -22.19715 -21.30870 -21.00699 -20.85021 -18.79254 -17.37789 -16.78052 -16.59788 -16.22428 -16.12825 -15.42359 -15.16050 -15.02763 -14.52292 -14.31366 -13.88885 -13.67452 -13.44007 -13.14666 -13.05419 -12.81158 -12.49488 -12.01433 -11.90067 -11.77082 -11.60341 -11.39984 -11.01561 -10.77854 -10.74933 -10.56683 -9.99923 -9.73108 -9.48440 -9.28634 -8.61434 -8.52098 -7.61633 -7.55269 -6.06536 -4.04857 1.00317 1.37402 2.53169 2.77963 3.08577 3.26720 3.34469 3.36206 3.67512 4.40345 4.42814 4.50582 4.57142 4.75383 4.83411 4.92220 4.99877 5.04141 5.17916 5.23725 5.26036 5.32740 5.34946 5.42926 5.59597 5.64764 5.87799 5.90662 6.08640 6.19907 6.29237 6.38850 6.50182 6.71369 6.78175 6.96458 7.25719 7.35227 7.57046 7.72638 7.84340 8.31125 8.63006 9.02350 9.54684 11.06771 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035854 B = 0.002512 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.749162 B =11143.323585 C =11772.639197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.068 3.932 3 Si 0.879 3.121 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.517 4.517 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.675 5.675 11 C 0.030 3.970 12 C 0.113 3.887 13 H 0.118 0.882 14 O -0.548 6.548 15 C 0.028 3.972 16 O -0.296 6.296 17 C 0.187 3.813 18 C -0.252 4.252 19 C -0.054 4.054 20 C -0.178 4.178 21 C 0.131 3.869 22 N -0.597 5.597 23 H 0.416 0.584 24 C 0.030 3.970 25 C -0.175 4.175 26 C -0.140 4.140 27 H 0.264 0.736 28 H 0.026 0.974 29 H -0.021 1.021 30 H 0.344 0.656 31 H 0.024 0.976 32 H 0.076 0.924 33 H 0.369 0.631 34 H 0.065 0.935 35 H 0.073 0.927 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.119 0.881 39 H 0.171 0.829 40 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.330 -14.671 0.142 31.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.134 4.134 3 Si 0.706 3.294 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.555 4.555 8 H 0.098 0.902 9 C 0.037 3.963 10 N -0.306 5.306 11 C -0.100 4.100 12 C 0.053 3.947 13 H 0.136 0.864 14 O -0.352 6.352 15 C -0.048 4.048 16 O -0.208 6.208 17 C 0.140 3.860 18 C -0.272 4.272 19 C -0.073 4.073 20 C -0.199 4.199 21 C 0.023 3.977 22 N -0.200 5.200 23 H 0.252 0.748 24 C -0.094 4.094 25 C -0.199 4.199 26 C -0.145 4.145 27 H 0.074 0.926 28 H 0.044 0.956 29 H -0.003 1.003 30 H 0.163 0.837 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.215 0.785 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.137 0.863 39 H 0.188 0.812 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 26.687 -15.244 1.251 30.759 hybrid contribution 1.444 1.708 -1.178 2.528 sum 28.131 -13.537 0.072 31.218 Atomic orbital electron populations 1.69901 1.06149 1.26892 1.50834 1.24917 0.94776 0.98949 0.94748 0.86808 0.80287 0.83859 0.78404 1.20361 1.21104 1.19232 1.21056 0.88854 0.94921 1.50681 0.90167 1.20027 0.96823 0.84758 0.94711 1.60400 1.03165 1.16796 1.50275 1.22486 0.92560 0.94225 1.00755 1.22059 0.89315 0.94330 0.89001 0.86424 1.86676 1.75111 1.58291 1.15146 1.23678 0.97367 0.81735 1.02004 1.86152 1.19605 1.28486 1.86569 1.18444 0.82717 0.91865 0.92980 1.20953 0.93997 0.98048 1.14179 1.20537 0.94463 0.95793 0.96533 1.19840 0.98178 0.90369 1.11510 1.17959 0.93804 0.84131 1.01808 1.41780 1.08803 1.04396 1.65059 0.74780 1.21795 0.83730 0.98146 1.05732 1.21715 0.99150 0.89815 1.09261 1.18359 0.92405 0.91656 1.12056 0.92612 0.95580 1.00323 0.83743 0.95756 0.90594 0.78466 0.91714 0.90850 0.85406 0.85560 0.86339 0.81206 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 7 C -0.52 -14.94 9.87 -34.44 -0.34 -15.28 16 8 H 0.08 2.53 8.06 -52.48 -0.42 2.10 16 9 C 0.16 3.99 4.51 -4.97 -0.02 3.97 16 10 N -0.67 -13.95 6.49 -115.05 -0.75 -14.70 16 11 C 0.03 0.47 5.36 -3.82 -0.02 0.45 16 12 C 0.11 1.55 3.49 -26.72 -0.09 1.46 16 13 H 0.12 1.80 8.14 -51.93 -0.42 1.38 16 14 O -0.55 -7.90 12.83 -40.09 -0.51 -8.42 16 15 C 0.03 0.33 4.38 37.16 0.16 0.49 16 16 O -0.30 -4.07 10.11 -24.21 -0.24 -4.32 16 17 C 0.19 2.43 6.72 -38.94 -0.26 2.16 16 18 C -0.25 -2.76 9.04 -39.42 -0.36 -3.12 16 19 C -0.05 -0.51 10.01 -39.57 -0.40 -0.90 16 20 C -0.18 -1.65 10.06 -39.41 -0.40 -2.05 16 21 C 0.13 1.38 7.27 -84.00 -0.61 0.77 16 22 N -0.60 -4.59 6.07 -10.64 -0.06 -4.65 16 23 H 0.42 1.76 8.96 -40.82 -0.37 1.40 16 24 C 0.03 0.24 11.82 -16.69 -0.20 0.04 16 25 C -0.17 -1.92 11.08 -37.68 -0.42 -2.34 16 26 C -0.14 -1.76 6.32 -105.03 -0.66 -2.43 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.03 0.64 7.20 -51.93 -0.37 0.27 16 29 H -0.02 -0.50 7.57 -51.93 -0.39 -0.89 16 30 H 0.34 7.12 8.28 -39.29 -0.33 6.79 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.37 3.97 9.05 45.56 0.41 4.39 16 34 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 35 H 0.07 0.76 7.68 -51.93 -0.40 0.36 16 36 H 0.13 1.21 6.29 -52.49 -0.33 0.88 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.17 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.15 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 338.77 15.07 5.11 5.11 Total: -1.00 -34.81 338.77 -8.79 -43.60 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -4.72 Total: 8.39 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -3.71 Total: -14.87 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: -0.04 Total: -46.37 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.76 Total: -12.73 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.81 -8.79 -43.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.911 kcal (2) G-P(sol) polarization free energy of solvation -34.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds