Wall clock time and date at job start Tue Mar 31 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00192 * 2 1 4 4 H 1.48502 * 109.47033 * 269.99828 * 3 2 1 5 5 H 1.48506 * 109.47354 * 29.99969 * 3 2 1 6 6 H 1.48507 * 109.47273 * 149.99849 * 3 2 1 7 7 C 1.37876 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00150 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 180.02562 * 7 2 1 10 10 N 1.46906 * 109.46990 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 7 12 12 C 1.53008 * 109.46622 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47223 * 304.99930 * 12 11 10 14 14 O 1.42900 * 109.47139 * 65.00304 * 12 11 10 15 15 C 1.53008 * 109.46744 * 185.00131 * 12 11 10 16 16 O 1.42894 * 109.46781 * 175.00274 * 15 12 11 17 17 C 1.35879 * 117.00217 * 180.02562 * 16 15 12 18 18 C 1.38171 * 120.21671 * 359.72349 * 17 16 15 19 19 C 1.38751 * 120.30915 * 179.66636 * 18 17 16 20 20 C 1.37755 * 120.72504 * 0.65696 * 19 18 17 21 21 C 1.39182 * 120.02375 * 359.63697 * 20 19 18 22 22 N 1.37686 * 133.38651 * 180.02562 * 21 20 19 23 23 H 0.96998 * 125.07017 * 0.02562 * 22 21 20 24 24 C 1.36941 * 109.86738 * 180.02562 * 22 21 20 25 25 C 1.34207 * 109.89307 * 359.97438 * 24 22 21 26 26 C 1.40013 * 120.22708 * 179.97438 * 17 16 15 27 27 H 0.96998 * 119.99627 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47064 * 60.00368 * 9 7 2 29 29 H 1.09000 * 109.47099 * 300.00095 * 9 7 2 30 30 H 1.00896 * 111.00309 * 56.04484 * 10 9 7 31 31 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 32 32 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 33 33 H 0.96697 * 114.00040 * 59.99197 * 14 12 11 34 34 H 1.09005 * 109.46614 * 294.99810 * 15 12 11 35 35 H 1.08993 * 109.46898 * 55.00161 * 15 12 11 36 36 H 1.07992 * 119.84430 * 359.97438 * 18 17 16 37 37 H 1.08005 * 119.63320 * 180.32034 * 19 18 17 38 38 H 1.07998 * 119.99152 * 179.66616 * 20 19 18 39 39 H 1.07994 * 125.04852 * 180.02562 * 24 22 21 40 40 H 1.08002 * 126.50324 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0010 11 6 5.4696 -2.6183 0.0022 12 6 5.9409 -4.0740 0.0027 13 1 5.4914 -4.6012 0.8442 14 8 5.5470 -4.7026 -1.2187 15 6 7.4651 -4.1165 0.1296 16 8 7.8955 -5.4740 0.2471 17 6 9.2316 -5.6891 0.3698 18 6 10.1103 -4.6229 0.3715 19 6 11.4744 -4.8399 0.5036 20 6 11.9756 -6.1176 0.6212 21 6 11.1109 -7.2082 0.6160 22 7 11.3030 -8.5681 0.7138 23 1 12.1642 -9.0037 0.8111 24 6 10.0970 -9.2140 0.6532 25 6 9.1060 -8.3191 0.5181 26 6 9.7274 -6.9930 0.4900 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6801 0.8912 29 1 3.8752 -0.6804 -0.8888 30 1 3.6259 -3.0953 -0.7806 31 1 5.8473 -2.1141 -0.8873 32 1 5.8459 -2.1147 0.8927 33 1 5.9110 -4.2850 -2.0112 34 1 7.9160 -3.6676 -0.7555 35 1 7.7715 -3.5602 1.0154 36 1 9.7333 -3.6156 0.2747 37 1 12.1510 -3.9981 0.5088 38 1 13.0400 -6.2732 0.7180 39 1 9.9633 -10.2843 0.7070 40 1 8.0505 -8.5357 0.4438 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819269998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:54 Heat of formation + Delta-G solvation = -55.408785 kcal Electronic energy + Delta-G solvation = -21781.427878 eV Core-core repulsion = 18367.754780 eV Total energy + Delta-G solvation = -3413.673098 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18312 -40.39548 -38.71549 -36.93777 -36.35537 -34.45043 -32.63794 -31.61628 -30.24911 -29.58732 -28.85426 -25.95889 -23.50472 -23.23823 -22.91725 -22.15483 -21.58499 -19.60306 -19.02808 -18.08554 -17.62862 -17.21720 -16.96715 -16.76346 -16.24673 -15.95738 -15.75156 -15.41518 -15.28372 -14.87797 -14.60482 -14.41807 -14.22744 -13.85296 -13.62585 -13.46949 -13.15802 -12.76781 -12.60936 -12.56040 -12.47710 -12.18406 -11.81094 -11.79602 -11.72042 -11.53215 -10.99538 -10.82369 -10.25861 -9.25032 -9.18016 -8.35719 -8.30228 -6.35773 0.26053 0.60772 1.35113 1.38081 1.49214 1.82462 2.02826 2.33939 2.34407 2.90111 3.03452 3.37606 3.48008 3.84192 3.92594 3.98451 4.01527 4.15343 4.20212 4.29202 4.33649 4.36778 4.49491 4.56830 4.65763 4.76468 4.78728 4.95024 5.04429 5.07066 5.13537 5.38553 5.51432 5.56712 5.67630 5.75441 5.92135 6.05224 6.51072 6.53255 6.63671 6.74101 6.75953 6.81034 7.29111 8.86840 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035854 B = 0.002512 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.749162 B =11143.323585 C =11772.639197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.246 1.246 7 C -0.533 4.533 8 H 0.033 0.967 9 C 0.175 3.825 10 N -0.691 5.691 11 C 0.033 3.967 12 C 0.122 3.878 13 H 0.095 0.905 14 O -0.567 6.567 15 C 0.036 3.964 16 O -0.321 6.321 17 C 0.152 3.848 18 C -0.254 4.254 19 C -0.063 4.063 20 C -0.173 4.173 21 C 0.115 3.885 22 N -0.584 5.584 23 H 0.434 0.566 24 C 0.059 3.941 25 C -0.225 4.225 26 C -0.172 4.172 27 H 0.268 0.732 28 H 0.029 0.971 29 H -0.010 1.010 30 H 0.340 0.660 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.385 0.615 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.140 0.860 37 H 0.155 0.845 38 H 0.148 0.852 39 H 0.211 0.789 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.260 -14.012 0.082 34.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.170 1.170 7 C -0.571 4.571 8 H 0.051 0.949 9 C 0.047 3.953 10 N -0.322 5.322 11 C -0.096 4.096 12 C 0.063 3.937 13 H 0.113 0.887 14 O -0.374 6.374 15 C -0.040 4.040 16 O -0.234 6.234 17 C 0.106 3.894 18 C -0.274 4.274 19 C -0.083 4.083 20 C -0.193 4.193 21 C 0.006 3.994 22 N -0.189 5.189 23 H 0.274 0.726 24 C -0.067 4.067 25 C -0.249 4.249 26 C -0.178 4.178 27 H 0.077 0.923 28 H 0.047 0.953 29 H 0.008 0.992 30 H 0.158 0.842 31 H 0.064 0.936 32 H 0.105 0.895 33 H 0.234 0.766 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.158 0.842 37 H 0.173 0.827 38 H 0.165 0.835 39 H 0.227 0.773 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 30.674 -14.613 1.187 33.998 hybrid contribution 0.230 1.321 -1.163 1.775 sum 30.904 -13.292 0.024 33.641 Atomic orbital electron populations 1.70070 1.08338 1.28319 1.52176 1.25971 0.95726 1.03608 0.94017 0.85573 0.79375 0.77825 0.79241 1.18978 1.20715 1.16958 1.21364 0.91622 0.93382 1.50742 0.94907 1.19772 0.93578 0.86883 0.95058 1.60264 1.06644 1.14816 1.50506 1.22545 0.89193 0.95704 1.02202 1.21810 0.90939 0.92764 0.88207 0.88697 1.86637 1.75738 1.58935 1.16086 1.23563 0.95401 0.81529 1.03506 1.86087 1.20676 1.29343 1.87335 1.18746 0.82495 0.92854 0.95318 1.21212 0.94639 0.98068 1.13465 1.20924 0.94245 0.96955 0.96137 1.20242 0.99484 0.89938 1.09672 1.18225 0.93237 0.85580 1.02320 1.41828 1.09679 1.03549 1.63851 0.72608 1.22332 0.82898 0.99430 1.01994 1.21842 0.99690 0.90458 1.12959 1.18826 0.93950 0.92232 1.12757 0.92313 0.95278 0.99198 0.84163 0.93569 0.89541 0.76647 0.89755 0.89585 0.84208 0.82730 0.83469 0.77261 0.84320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.19 13.96 21.45 0.30 -59.89 16 2 C 0.00 0.24 5.47 84.65 0.46 0.71 16 3 Si 0.96 43.87 27.47 68.60 1.88 45.75 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.25 -10.36 6.54 99.48 0.65 -9.70 16 7 C -0.53 -31.56 9.87 25.60 0.25 -31.31 16 8 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 9 C 0.18 8.37 4.51 85.56 0.39 8.75 16 10 N -0.69 -28.53 6.49 -517.91 -3.36 -31.89 16 11 C 0.03 0.99 5.36 86.31 0.46 1.45 16 12 C 0.12 3.35 3.49 30.60 0.11 3.46 16 13 H 0.10 3.01 8.14 -2.39 -0.02 3.00 16 14 O -0.57 -16.41 12.83 -144.34 -1.85 -18.26 16 15 C 0.04 0.80 4.38 71.98 0.32 1.11 16 16 O -0.32 -9.05 10.11 -87.54 -0.89 -9.93 16 17 C 0.15 3.97 6.72 22.68 0.15 4.12 16 18 C -0.25 -5.25 9.04 22.38 0.20 -5.05 16 19 C -0.06 -1.05 10.01 22.28 0.22 -0.82 16 20 C -0.17 -2.78 10.06 22.38 0.23 -2.55 16 21 C 0.12 2.26 7.27 39.02 0.28 2.55 16 22 N -0.58 -7.66 6.07 -187.59 -1.14 -8.80 16 23 H 0.43 2.33 8.96 -92.71 -0.83 1.50 16 24 C 0.06 0.84 11.82 82.97 0.98 1.82 16 25 C -0.22 -5.05 11.08 23.50 0.26 -4.79 16 26 C -0.17 -4.39 6.32 -20.13 -0.13 -4.52 16 27 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 28 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 29 H -0.01 -0.44 7.57 -2.39 -0.02 -0.45 16 30 H 0.34 14.35 8.28 -89.70 -0.74 13.61 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 33 H 0.38 8.02 9.05 -74.06 -0.67 7.35 16 34 H 0.08 1.52 7.66 -2.38 -0.02 1.51 16 35 H 0.09 1.67 7.68 -2.39 -0.02 1.65 16 36 H 0.14 2.38 6.29 -2.91 -0.02 2.36 16 37 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 39 H 0.21 1.10 8.06 -2.91 -0.02 1.08 16 40 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -78.72 338.77 -2.08 -80.80 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: -1.22 Total: 27.30 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: 4.19 Total: -25.08 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -4.20 Total: -100.58 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -2.74 Total: -28.19 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 1.88 Total: 45.75 kcal Total: -78.72 -2.08 -80.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819269998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.390 kcal (2) G-P(sol) polarization free energy of solvation -78.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds