Wall clock time and date at job start Tue Mar 31 2020 06:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 14 14 O 1.42906 * 109.47257 * 300.00098 * 12 11 10 15 15 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 16 16 O 1.42895 * 109.47510 * 184.99941 * 15 12 11 17 17 C 1.35874 * 117.00398 * 179.97438 * 16 15 12 18 18 C 1.38169 * 120.22123 * 359.72517 * 17 16 15 19 19 C 1.38752 * 120.31771 * 179.66380 * 18 17 16 20 20 C 1.37756 * 120.71370 * 0.65523 * 19 18 17 21 21 C 1.39176 * 120.02954 * 359.64262 * 20 19 18 22 22 N 1.37694 * 133.38279 * 180.02562 * 21 20 19 23 23 H 0.96996 * 125.07247 * 0.02562 * 22 21 20 24 24 C 1.36937 * 109.86396 * 180.02562 * 22 21 20 25 25 C 1.34211 * 109.89466 * 0.02562 * 24 22 21 26 26 C 1.40017 * 120.22909 * 179.97438 * 17 16 15 27 27 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 29 29 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 30 30 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 31 31 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 32 32 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 33 33 H 0.96709 * 113.99630 * 299.99873 * 14 12 11 34 34 H 1.09001 * 109.46559 * 305.00226 * 15 12 11 35 35 H 1.08997 * 109.47028 * 64.99590 * 15 12 11 36 36 H 1.08006 * 119.84018 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.63744 * 180.32524 * 19 18 17 38 38 H 1.08007 * 119.98319 * 179.66297 * 20 19 18 39 39 H 1.08001 * 125.05088 * 179.97438 * 24 22 21 40 40 H 1.08000 * 126.50407 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 1 3.1541 -5.9688 0.8899 14 8 3.3500 -5.9455 -1.1667 15 6 1.8004 -7.3881 -0.0018 16 8 2.7529 -8.4467 0.1162 17 6 2.2666 -9.7154 0.1313 18 6 0.9063 -9.9398 0.0408 19 6 0.4080 -11.2347 0.0490 20 6 1.2563 -12.3144 0.1606 21 6 2.6300 -12.1135 0.2592 22 7 3.7043 -12.9664 0.3785 23 1 3.6466 -13.9340 0.4139 24 6 4.8666 -12.2449 0.4396 25 6 4.5942 -10.9329 0.3647 26 6 3.1401 -10.8039 0.2439 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8403 -3.5488 -0.7819 31 1 0.8798 -4.9817 0.8886 32 1 0.8805 -4.9812 -0.8914 33 1 2.8598 -6.0039 -1.9983 34 1 1.1082 -7.4267 0.8393 35 1 1.2464 -7.5000 -0.9337 36 1 0.2279 -9.1034 -0.0418 37 1 -0.6569 -11.3977 -0.0277 38 1 0.8552 -13.3171 0.1712 39 1 5.8555 -12.6687 0.5348 40 1 5.3112 -10.1256 0.3871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819270001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:57 Heat of formation + Delta-G solvation = -32.258644 kcal Electronic energy + Delta-G solvation = -21731.441688 eV Core-core repulsion = 18318.772455 eV Total energy + Delta-G solvation = -3412.669233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.44063 -39.44045 -37.50547 -36.07561 -34.59606 -32.40724 -31.77520 -30.23834 -29.46875 -28.47205 -26.96178 -24.51727 -22.63991 -22.21492 -21.31862 -21.14508 -20.81240 -18.75035 -17.28775 -16.54707 -16.51014 -16.17640 -16.00390 -15.27752 -15.07798 -14.94622 -14.53193 -14.39677 -13.83901 -13.64439 -13.37353 -13.08607 -12.81062 -12.77530 -12.34462 -11.89489 -11.80955 -11.45655 -11.39013 -11.27632 -10.96331 -10.77213 -10.74276 -10.53795 -10.13211 -9.75718 -9.45195 -9.16259 -8.49095 -8.48948 -7.58210 -7.34032 -6.04032 -4.05783 1.03631 1.40944 2.55679 2.81327 3.13284 3.32873 3.38712 3.44242 3.71053 4.42320 4.51235 4.53769 4.65287 4.79824 4.88671 4.97705 5.05300 5.09356 5.22071 5.31744 5.32802 5.40325 5.47247 5.48171 5.68159 5.74616 5.90845 6.06728 6.12987 6.29791 6.33061 6.42231 6.53002 6.81314 7.19172 7.28561 7.37509 7.40157 7.76713 7.80255 8.10271 8.37756 8.59188 9.03701 9.59287 11.07182 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039716 B = 0.002374 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.838886 B =11793.896666 C =12366.314832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.514 4.514 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.684 5.684 11 C 0.033 3.967 12 C 0.114 3.886 13 H 0.115 0.885 14 O -0.549 6.549 15 C 0.028 3.972 16 O -0.296 6.296 17 C 0.187 3.813 18 C -0.251 4.251 19 C -0.053 4.053 20 C -0.178 4.178 21 C 0.131 3.869 22 N -0.597 5.597 23 H 0.415 0.585 24 C 0.030 3.970 25 C -0.175 4.175 26 C -0.140 4.140 27 H 0.261 0.739 28 H -0.014 1.014 29 H 0.028 0.972 30 H 0.337 0.663 31 H 0.075 0.925 32 H 0.023 0.977 33 H 0.369 0.631 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.170 0.830 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.511 -28.123 -0.667 28.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.147 4.147 3 Si 0.728 3.272 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.553 4.553 8 H 0.082 0.918 9 C 0.067 3.933 10 N -0.316 5.316 11 C -0.098 4.098 12 C 0.054 3.946 13 H 0.133 0.867 14 O -0.353 6.353 15 C -0.048 4.048 16 O -0.209 6.209 17 C 0.140 3.860 18 C -0.271 4.271 19 C -0.073 4.073 20 C -0.200 4.200 21 C 0.023 3.977 22 N -0.201 5.201 23 H 0.252 0.748 24 C -0.095 4.095 25 C -0.199 4.199 26 C -0.145 4.145 27 H 0.071 0.929 28 H 0.004 0.996 29 H 0.046 0.954 30 H 0.155 0.845 31 H 0.094 0.906 32 H 0.041 0.959 33 H 0.215 0.785 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.136 0.864 39 H 0.188 0.812 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.165 -27.959 0.499 28.272 hybrid contribution -0.848 0.379 -1.259 1.565 sum 3.317 -27.580 -0.760 27.789 Atomic orbital electron populations 1.69966 1.06104 1.26823 1.50967 1.25001 0.94906 0.99447 0.95300 0.86453 0.79813 0.82841 0.78055 1.20696 1.21249 1.19699 1.21188 0.93626 0.90144 1.50293 0.91830 1.19577 0.90567 0.87385 0.95734 1.60574 1.20862 1.00347 1.49792 1.22427 0.95068 0.91523 1.00762 1.22066 0.93095 0.89108 0.90353 0.86706 1.86660 1.37286 1.95874 1.15447 1.23701 0.92107 0.87020 1.02007 1.86148 1.35967 1.11876 1.86869 1.18450 0.91123 0.83401 0.93029 1.20970 0.93584 0.98434 1.14162 1.20542 0.99067 0.91136 0.96526 1.19836 0.89223 0.99364 1.11534 1.17956 0.89067 0.88854 1.01830 1.41774 1.04658 1.08401 1.65222 0.74800 1.21786 0.90087 0.91718 1.05872 1.21710 0.93271 0.95691 1.09270 1.18355 0.93699 0.90295 1.12150 0.92908 0.99625 0.95430 0.84497 0.90642 0.95918 0.78486 0.90851 0.91689 0.85346 0.85541 0.86358 0.81243 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.74 9.32 -34.44 -0.32 -15.06 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.19 5.10 5.44 -4.98 -0.03 5.07 16 10 N -0.68 -14.76 6.49 -115.06 -0.75 -15.51 16 11 C 0.03 0.55 5.39 -3.82 -0.02 0.53 16 12 C 0.11 1.64 3.52 -26.73 -0.09 1.55 16 13 H 0.12 1.81 8.14 -51.93 -0.42 1.39 16 14 O -0.55 -8.23 12.64 -40.10 -0.51 -8.74 16 15 C 0.03 0.34 4.38 37.16 0.16 0.50 16 16 O -0.30 -4.20 10.11 -24.21 -0.24 -4.45 16 17 C 0.19 2.50 6.72 -38.94 -0.26 2.24 16 18 C -0.25 -2.87 9.04 -39.42 -0.36 -3.22 16 19 C -0.05 -0.52 10.01 -39.57 -0.40 -0.92 16 20 C -0.18 -1.71 10.06 -39.41 -0.40 -2.10 16 21 C 0.13 1.42 7.27 -84.01 -0.61 0.81 16 22 N -0.60 -4.71 6.08 -10.64 -0.06 -4.78 16 23 H 0.42 1.84 8.96 -40.82 -0.37 1.48 16 24 C 0.03 0.24 11.82 -16.69 -0.20 0.05 16 25 C -0.17 -1.96 11.08 -37.68 -0.42 -2.38 16 26 C -0.14 -1.81 6.32 -105.03 -0.66 -2.47 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H -0.01 -0.39 8.14 -51.93 -0.42 -0.81 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.34 7.15 8.11 -39.29 -0.32 6.83 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.37 4.25 9.05 45.56 0.41 4.67 16 34 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 35 H 0.06 0.70 7.68 -51.93 -0.40 0.30 16 36 H 0.13 1.29 6.29 -52.48 -0.33 0.96 16 37 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.17 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.15 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 342.08 15.07 5.16 5.16 Total: -1.00 -34.21 342.08 -9.14 -43.35 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -4.75 Total: 8.25 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -3.70 Total: -13.93 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -0.08 Total: -46.49 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -0.75 Total: -13.19 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.21 -9.14 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819270001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.094 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds