Wall clock time and date at job start Tue Mar 31 2020 06:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48507 * 109.47043 * 269.99976 * 3 2 1 5 5 H 1.48494 * 109.47326 * 29.99887 * 3 2 1 6 6 H 1.48497 * 109.47436 * 150.00165 * 3 2 1 7 7 C 1.37883 * 119.99532 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99815 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00023 * 359.97438 * 7 2 1 10 10 N 1.46901 * 109.46943 * 180.02562 * 9 7 2 11 11 C 1.46905 * 110.99870 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.47039 * 180.02562 * 11 10 9 13 13 H 1.08998 * 109.47408 * 60.00073 * 12 11 10 14 14 O 1.42906 * 109.47257 * 300.00098 * 12 11 10 15 15 C 1.53004 * 109.47360 * 180.02562 * 12 11 10 16 16 O 1.42895 * 109.47510 * 184.99941 * 15 12 11 17 17 C 1.35874 * 117.00398 * 179.97438 * 16 15 12 18 18 C 1.38169 * 120.22123 * 359.72517 * 17 16 15 19 19 C 1.38752 * 120.31771 * 179.66380 * 18 17 16 20 20 C 1.37756 * 120.71370 * 0.65523 * 19 18 17 21 21 C 1.39176 * 120.02954 * 359.64262 * 20 19 18 22 22 N 1.37694 * 133.38279 * 180.02562 * 21 20 19 23 23 H 0.96996 * 125.07247 * 0.02562 * 22 21 20 24 24 C 1.36937 * 109.86396 * 180.02562 * 22 21 20 25 25 C 1.34211 * 109.89466 * 0.02562 * 24 22 21 26 26 C 1.40017 * 120.22909 * 179.97438 * 17 16 15 27 27 H 0.97001 * 119.99132 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46763 * 60.00533 * 9 7 2 29 29 H 1.08995 * 109.47483 * 300.00190 * 9 7 2 30 30 H 1.00901 * 111.00067 * 303.95401 * 10 9 7 31 31 H 1.09001 * 109.46798 * 300.00327 * 11 10 9 32 32 H 1.08998 * 109.46961 * 60.00043 * 11 10 9 33 33 H 0.96709 * 113.99630 * 299.99873 * 14 12 11 34 34 H 1.09001 * 109.46559 * 305.00226 * 15 12 11 35 35 H 1.08997 * 109.47028 * 64.99590 * 15 12 11 36 36 H 1.08006 * 119.84018 * 359.97438 * 18 17 16 37 37 H 1.07998 * 119.63744 * 180.32524 * 19 18 17 38 38 H 1.08007 * 119.98319 * 179.66297 * 20 19 18 39 39 H 1.08001 * 125.05088 * 179.97438 * 24 22 21 40 40 H 1.08000 * 126.50407 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4469 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5050 -4.9071 -0.0011 12 6 2.5298 -6.0431 -0.0005 13 1 3.1541 -5.9688 0.8899 14 8 3.3500 -5.9455 -1.1667 15 6 1.8004 -7.3881 -0.0018 16 8 2.7529 -8.4467 0.1162 17 6 2.2666 -9.7154 0.1313 18 6 0.9063 -9.9398 0.0408 19 6 0.4080 -11.2347 0.0490 20 6 1.2563 -12.3144 0.1606 21 6 2.6300 -12.1135 0.2592 22 7 3.7043 -12.9664 0.3785 23 1 3.6466 -13.9340 0.4139 24 6 4.8666 -12.2449 0.4396 25 6 4.5942 -10.9329 0.3647 26 6 3.1401 -10.8039 0.2439 27 1 -0.4849 0.8401 0.0004 28 1 0.6240 -2.5566 -0.8904 29 1 0.6246 -2.5571 0.8896 30 1 2.8403 -3.5488 -0.7819 31 1 0.8798 -4.9817 0.8886 32 1 0.8805 -4.9812 -0.8914 33 1 2.8598 -6.0039 -1.9983 34 1 1.1082 -7.4267 0.8393 35 1 1.2464 -7.5000 -0.9337 36 1 0.2279 -9.1034 -0.0418 37 1 -0.6569 -11.3977 -0.0277 38 1 0.8552 -13.3171 0.1712 39 1 5.8555 -12.6687 0.5348 40 1 5.3112 -10.1256 0.3871 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819270001.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:56 Heat of formation + Delta-G solvation = -58.405603 kcal Electronic energy + Delta-G solvation = -21732.575505 eV Core-core repulsion = 18318.772455 eV Total energy + Delta-G solvation = -3413.803050 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.18382 -40.39988 -38.71071 -36.93398 -36.31402 -34.41294 -32.62483 -31.48949 -30.24370 -29.40902 -28.62121 -26.02722 -23.72610 -23.31597 -22.96325 -22.17190 -21.57955 -19.58830 -18.71661 -18.04058 -17.62552 -17.18371 -16.95460 -16.78418 -16.31819 -16.00475 -15.75291 -15.42136 -15.08540 -14.93459 -14.59038 -14.24577 -14.11734 -13.85130 -13.48246 -13.35914 -13.08123 -12.75438 -12.64040 -12.61547 -12.56286 -12.18347 -12.08035 -11.79989 -11.74829 -11.42824 -10.96203 -10.67079 -10.25805 -9.25213 -9.14553 -8.35730 -8.23805 -6.34612 0.25872 0.60365 1.41498 1.43086 1.55198 1.82903 2.01702 2.33496 2.41023 2.89786 3.09631 3.38341 3.50533 3.84204 3.93189 3.99266 4.01437 4.15364 4.19815 4.28396 4.33536 4.36038 4.49247 4.56852 4.68236 4.78543 4.94681 4.98659 5.11018 5.13771 5.24601 5.38405 5.56591 5.60176 5.67435 5.75555 6.00112 6.05016 6.41556 6.50413 6.68664 6.76393 6.78119 6.87889 7.36262 8.87717 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.039716 B = 0.002374 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.838886 B =11793.896666 C =12366.314832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.002 3.998 3 Si 0.974 3.026 4 H -0.270 1.270 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.062 0.938 9 C 0.208 3.792 10 N -0.688 5.688 11 C 0.035 3.965 12 C 0.127 3.873 13 H 0.099 0.901 14 O -0.564 6.564 15 C 0.036 3.964 16 O -0.319 6.319 17 C 0.151 3.849 18 C -0.255 4.255 19 C -0.064 4.064 20 C -0.171 4.171 21 C 0.115 3.885 22 N -0.584 5.584 23 H 0.434 0.566 24 C 0.060 3.940 25 C -0.224 4.224 26 C -0.172 4.172 27 H 0.266 0.734 28 H -0.035 1.035 29 H 0.003 0.997 30 H 0.340 0.660 31 H 0.077 0.923 32 H 0.036 0.964 33 H 0.384 0.616 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.148 0.852 39 H 0.212 0.788 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.846 -29.916 -0.873 30.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.798 3.202 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.191 1.191 7 C -0.577 4.577 8 H 0.080 0.920 9 C 0.081 3.919 10 N -0.320 5.320 11 C -0.095 4.095 12 C 0.067 3.933 13 H 0.117 0.883 14 O -0.371 6.371 15 C -0.040 4.040 16 O -0.232 6.232 17 C 0.105 3.895 18 C -0.275 4.275 19 C -0.083 4.083 20 C -0.192 4.192 21 C 0.006 3.994 22 N -0.189 5.189 23 H 0.274 0.726 24 C -0.066 4.066 25 C -0.249 4.249 26 C -0.177 4.177 27 H 0.075 0.925 28 H -0.017 1.017 29 H 0.021 0.979 30 H 0.158 0.842 31 H 0.096 0.904 32 H 0.054 0.946 33 H 0.233 0.767 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.155 0.845 37 H 0.172 0.828 38 H 0.166 0.834 39 H 0.228 0.772 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 4.494 -29.808 0.283 30.146 hybrid contribution -0.941 0.784 -1.200 1.715 sum 3.553 -29.024 -0.917 29.255 Atomic orbital electron populations 1.70081 1.07700 1.28059 1.51430 1.25946 0.95842 1.03358 0.94522 0.85321 0.78448 0.77930 0.78535 1.19585 1.20547 1.19092 1.21545 0.93781 0.91561 1.50765 0.92011 1.19225 0.90549 0.88673 0.93464 1.60419 1.20375 1.01168 1.50061 1.22473 0.95629 0.89957 1.01443 1.21767 0.92077 0.89626 0.89787 0.88349 1.86619 1.38145 1.95945 1.16352 1.23545 0.91581 0.85526 1.03340 1.86078 1.36820 1.12664 1.87666 1.18750 0.92231 0.83019 0.95465 1.21208 0.92993 0.99720 1.13596 1.20913 1.00614 0.90499 0.96284 1.20235 0.88709 1.00763 1.09524 1.18211 0.90183 0.88621 1.02344 1.41824 1.03858 1.09240 1.63940 0.72588 1.22343 0.91522 0.90705 1.02013 1.21843 0.92875 0.97219 1.12959 1.18817 0.94761 0.91336 1.12756 0.92538 1.01727 0.97912 0.84230 0.90435 0.94588 0.76747 0.89786 0.90055 0.84496 0.82816 0.83408 0.77173 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.49 13.29 21.45 0.28 -56.21 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 44.84 29.54 68.60 2.03 46.86 16 4 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -31.31 9.32 25.60 0.24 -31.07 16 8 H 0.06 3.53 7.81 -2.91 -0.02 3.51 16 9 C 0.21 11.27 5.44 85.56 0.47 11.74 16 10 N -0.69 -30.27 6.49 -517.93 -3.36 -33.63 16 11 C 0.04 1.18 5.39 86.30 0.47 1.65 16 12 C 0.13 3.72 3.52 30.59 0.11 3.83 16 13 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 14 O -0.56 -17.01 12.64 -144.32 -1.82 -18.84 16 15 C 0.04 0.88 4.38 71.98 0.31 1.19 16 16 O -0.32 -9.35 10.11 -87.47 -0.88 -10.24 16 17 C 0.15 4.13 6.72 22.68 0.15 4.28 16 18 C -0.26 -5.68 9.04 22.38 0.20 -5.48 16 19 C -0.06 -1.14 10.01 22.28 0.22 -0.91 16 20 C -0.17 -2.90 10.06 22.38 0.23 -2.68 16 21 C 0.12 2.33 7.27 39.01 0.28 2.61 16 22 N -0.58 -7.82 6.08 -187.59 -1.14 -8.96 16 23 H 0.43 2.44 8.96 -92.71 -0.83 1.61 16 24 C 0.06 0.85 11.82 82.98 0.98 1.83 16 25 C -0.22 -5.09 11.08 23.50 0.26 -4.83 16 26 C -0.17 -4.47 6.32 -20.13 -0.13 -4.60 16 27 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 28 H -0.03 -1.99 8.14 -2.39 -0.02 -2.01 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.34 14.60 8.11 -89.69 -0.73 13.88 16 31 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.38 8.73 9.05 -74.05 -0.67 8.06 16 34 H 0.08 1.84 7.65 -2.39 -0.02 1.82 16 35 H 0.08 1.69 7.68 -2.39 -0.02 1.68 16 36 H 0.14 2.64 6.29 -2.91 -0.02 2.62 16 37 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 39 H 0.21 1.10 8.06 -2.91 -0.02 1.07 16 40 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 Total: -1.00 -75.38 342.08 -1.79 -77.18 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -1.15 Total: 25.71 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 4.25 Total: -21.88 kcal Atomic # 7 Polarization: -94.58 SS G_CDS: -4.22 Total: -98.80 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -2.71 Total: -29.07 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -75.38 -1.79 -77.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819270001.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.770 kcal (2) G-P(sol) polarization free energy of solvation -75.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds