Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00151 * 2 1 4 4 C 1.50696 * 119.99801 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47119 * 0.02562 * 4 2 1 6 6 C 1.53000 * 109.47219 * 239.99872 * 4 2 1 7 7 C 1.50704 * 109.47037 * 119.99978 * 4 2 1 8 8 O 1.20825 * 120.00199 * 359.97438 * 7 4 2 9 9 O 1.34265 * 119.99869 * 180.02562 * 7 4 2 10 10 C 1.35922 * 117.00003 * 185.33868 * 9 7 4 11 11 C 1.38827 * 120.01820 * 246.46597 * 10 9 7 12 12 C 1.38194 * 120.07844 * 179.74190 * 11 10 9 13 13 C 1.38153 * 120.12464 * 0.50992 * 12 11 10 14 14 C 1.38900 * 120.04047 * 359.76526 * 13 12 11 15 15 O 1.35743 * 120.03889 * 179.97438 * 14 13 12 16 16 C 1.34834 * 116.99997 * 185.96787 * 15 14 13 17 17 H 1.08001 * 119.99641 * 354.90511 * 16 15 14 18 18 C 1.38658 * 120.00118 * 174.90687 * 16 15 14 19 19 N 1.31551 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99782 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47149 * 90.00140 * 20 18 16 22 22 H 1.48500 * 109.47138 * 210.00033 * 20 18 16 23 23 H 1.48493 * 109.47530 * 330.00162 * 20 18 16 24 24 C 1.38568 * 120.02302 * 66.74189 * 10 9 7 25 25 H 1.07990 * 120.00237 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99631 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47355 * 269.99973 * 3 2 1 28 28 H 1.09002 * 109.47447 * 30.00433 * 3 2 1 29 29 H 1.09003 * 109.47225 * 150.00190 * 3 2 1 30 30 H 1.09010 * 109.46992 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.47185 * 299.99519 * 5 4 2 32 32 H 1.08993 * 109.47207 * 60.00106 * 5 4 2 33 33 H 1.09008 * 109.47084 * 300.00237 * 6 4 2 34 34 H 1.08995 * 109.46954 * 59.99941 * 6 4 2 35 35 H 1.08998 * 109.47544 * 180.02562 * 6 4 2 36 36 H 1.07997 * 119.96291 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.93447 * 180.23478 * 12 11 10 38 38 H 1.07994 * 119.98224 * 179.74884 * 13 12 11 39 39 H 0.97000 * 120.00271 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.06282 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 1.0691 -2.4680 -0.0017 6 6 2.9431 -1.3867 1.2486 7 6 2.9298 -1.3844 -1.2311 8 8 2.9346 -0.4747 -2.0263 9 8 3.6956 -2.4664 -1.4443 10 6 4.5355 -2.4272 -2.5123 11 6 4.3320 -3.2813 -3.5876 12 6 5.1820 -3.2388 -4.6764 13 6 6.2429 -2.3540 -4.6937 14 6 6.4546 -1.5011 -3.6181 15 8 7.4973 -0.6321 -3.6349 16 6 7.7198 0.0788 -2.5110 17 1 7.0338 0.0043 -1.6803 18 6 8.8294 0.9056 -2.4220 19 7 9.6647 0.9967 -3.4341 20 14 9.1372 1.8910 -0.8652 21 1 9.9673 1.0912 0.0710 22 1 9.8495 3.1482 -1.2079 23 1 7.8396 2.2172 -0.2211 24 6 5.5988 -1.5388 -2.5259 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 2.2452 1.6198 -1.0277 28 1 1.4745 2.0648 0.5139 29 1 3.0160 1.1747 0.5138 30 1 1.6142 -3.4120 -0.0017 31 1 0.4422 -2.4109 0.8880 32 1 0.4429 -2.4096 -0.8919 33 1 3.6514 -0.5582 1.2490 34 1 2.3164 -1.3294 2.1386 35 1 3.4884 -2.3305 1.2480 36 1 3.5057 -3.9766 -3.5753 37 1 5.0193 -3.9017 -5.5134 38 1 6.9081 -2.3256 -5.5440 39 1 10.4411 1.5748 -3.3717 40 1 5.7611 -0.8763 -1.6884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000821404167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = -62.524207 kcal Electronic energy + Delta-G solvation = -23310.345031 eV Core-core repulsion = 19864.070634 eV Total energy + Delta-G solvation = -3446.274397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.15024 -39.05626 -37.92926 -36.41278 -35.70017 -32.35731 -32.19789 -29.66281 -28.92135 -28.65956 -26.14477 -25.50498 -24.60635 -22.70945 -21.65166 -20.61056 -18.29670 -18.27955 -17.68764 -16.50475 -16.16589 -15.93408 -15.37021 -15.13095 -14.51892 -14.35678 -13.99240 -13.92782 -13.62795 -13.19732 -13.13460 -12.83832 -12.55452 -12.41766 -12.27677 -12.09158 -11.92527 -11.81652 -11.57317 -11.30148 -11.15222 -11.05171 -10.89934 -10.80403 -10.51430 -10.34935 -10.13063 -9.54439 -9.18487 -8.88355 -8.13691 -7.35569 -6.49372 -4.08698 1.70650 2.06456 2.21453 2.42195 3.09284 3.11031 3.16097 3.19351 3.93219 4.28174 4.45605 4.57685 4.74946 4.93535 5.03285 5.09847 5.20683 5.38972 5.46623 5.53024 5.57627 5.59884 5.61386 5.74520 5.76759 5.77878 5.96191 6.00665 6.01892 6.09828 6.15307 6.31252 6.48338 6.56382 6.72096 6.90007 7.00933 7.08501 7.13539 7.32081 7.59940 7.94286 8.18344 8.95701 9.62316 10.68196 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005518 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.802310 B = 5073.418883 C = 6534.813759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.098 4.098 3 C -0.122 4.122 4 C -0.016 4.016 5 C -0.144 4.144 6 C -0.142 4.142 7 C 0.462 3.538 8 O -0.474 6.474 9 O -0.293 6.293 10 C 0.123 3.877 11 C -0.212 4.212 12 C -0.064 4.064 13 C -0.189 4.189 14 C 0.165 3.835 15 O -0.171 6.171 16 C -0.392 4.392 17 H 0.090 0.910 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.272 1.272 22 H -0.276 1.276 23 H -0.267 1.267 24 C -0.235 4.235 25 H 0.105 0.895 26 H 0.102 0.898 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.271 0.729 40 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.230 -5.194 8.430 18.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.098 4.098 3 C -0.179 4.179 4 C -0.017 4.017 5 C -0.201 4.201 6 C -0.199 4.199 7 C 0.304 3.696 8 O -0.358 6.358 9 O -0.209 6.209 10 C 0.082 3.918 11 C -0.231 4.231 12 C -0.082 4.082 13 C -0.208 4.208 14 C 0.111 3.889 15 O -0.073 6.073 16 C -0.468 4.468 17 H 0.107 0.893 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.197 1.197 22 H -0.201 1.201 23 H -0.192 1.192 24 C -0.255 4.255 25 H 0.123 0.877 26 H 0.120 0.880 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.081 0.919 40 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.827 -4.699 7.924 17.456 hybrid contribution 0.199 0.577 0.710 0.936 sum -14.628 -4.122 8.633 17.478 Atomic orbital electron populations 1.23814 0.94907 1.02374 1.02153 1.21309 0.95024 0.93936 0.99540 1.20919 0.99804 0.93663 1.03471 1.19514 0.94565 0.95759 0.91833 1.21961 0.98426 0.96734 1.02986 1.21890 0.99333 1.03755 0.94909 1.23772 0.78593 0.79995 0.87205 1.90707 1.62677 1.37214 1.45176 1.84496 1.48947 1.41809 1.45607 1.18257 0.89356 0.97851 0.86336 1.20427 1.03855 1.05070 0.93737 1.20487 0.93701 0.97349 0.96695 1.20323 1.01583 0.99333 0.99570 1.19113 0.88118 0.89125 0.92569 1.83995 1.40690 1.45284 1.37381 1.21300 1.09987 1.23002 0.92547 0.89267 1.25277 0.94673 0.97317 0.99018 1.70030 1.12677 1.36585 1.30103 0.85730 0.79042 0.78880 0.79946 1.19721 1.20080 1.19162 1.21174 0.98333 1.04126 1.01839 0.87689 0.87973 0.90006 0.91892 0.91906 0.90703 0.90679 0.91677 0.91506 0.90795 0.90626 0.86743 0.85981 0.85895 0.91898 0.85236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 13.29 29.02 0.39 -1.61 16 2 C -0.10 -1.20 4.42 -101.07 -0.45 -1.65 16 3 C -0.12 -1.57 9.12 36.01 0.33 -1.24 16 4 C -0.02 -0.20 0.82 -156.81 -0.13 -0.32 16 5 C -0.14 -1.41 7.06 37.16 0.26 -1.14 16 6 C -0.14 -1.55 8.23 37.16 0.31 -1.25 16 7 C 0.46 7.98 6.21 36.01 0.22 8.20 16 8 O -0.47 -9.79 14.02 -18.75 -0.26 -10.05 16 9 O -0.29 -5.34 9.85 -23.61 -0.23 -5.57 16 10 C 0.12 2.54 5.34 -39.24 -0.21 2.33 16 11 C -0.21 -3.95 9.99 -39.38 -0.39 -4.34 16 12 C -0.06 -1.17 10.03 -39.63 -0.40 -1.56 16 13 C -0.19 -4.05 9.99 -39.37 -0.39 -4.44 16 14 C 0.17 4.13 6.64 -39.13 -0.26 3.87 16 15 O -0.17 -4.95 9.76 0.06 0.00 -4.95 16 16 C -0.39 -11.20 9.49 30.89 0.29 -10.91 16 17 H 0.09 2.41 5.21 -52.49 -0.27 2.14 16 18 C 0.04 1.16 5.49 -17.52 -0.10 1.07 16 19 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 20 Si 0.94 20.76 29.55 -169.99 -5.02 15.74 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 C -0.23 -5.53 8.30 -39.25 -0.33 -5.85 16 25 H 0.10 0.91 5.69 -52.49 -0.30 0.61 16 26 H 0.10 0.93 8.04 -52.48 -0.42 0.51 16 27 H 0.08 1.24 7.38 -51.93 -0.38 0.85 16 28 H 0.06 0.66 8.06 -51.93 -0.42 0.24 16 29 H 0.06 0.82 6.64 -51.93 -0.34 0.47 16 30 H 0.07 0.71 8.11 -51.92 -0.42 0.29 16 31 H 0.07 0.56 7.49 -51.93 -0.39 0.17 16 32 H 0.06 0.64 7.50 -51.93 -0.39 0.25 16 33 H 0.07 0.79 6.80 -51.92 -0.35 0.44 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.81 8.11 -51.93 -0.42 0.39 16 36 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 38 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 39 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.13 3.14 5.64 -52.48 -0.30 2.84 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -32.46 337.89 -5.76 -38.21 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -5.24 Total: 4.88 kcal Atomic # 6 Polarization: -17.99 SS G_CDS: -0.85 Total: -18.85 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.76 Total: -24.51 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.49 Total: -20.57 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.46 -5.76 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821404167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.311 kcal (2) G-P(sol) polarization free energy of solvation -32.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds