Wall clock time and date at job start Tue Mar 31 2020 05:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50700 * 120.00151 * 2 1 4 4 C 1.50696 * 119.99801 * 180.02562 * 2 1 3 5 5 C 1.52999 * 109.47119 * 0.02562 * 4 2 1 6 6 C 1.53000 * 109.47219 * 239.99872 * 4 2 1 7 7 C 1.50704 * 109.47037 * 119.99978 * 4 2 1 8 8 O 1.20825 * 120.00199 * 359.97438 * 7 4 2 9 9 O 1.34265 * 119.99869 * 180.02562 * 7 4 2 10 10 C 1.35922 * 117.00003 * 185.33868 * 9 7 4 11 11 C 1.38827 * 120.01820 * 246.46597 * 10 9 7 12 12 C 1.38194 * 120.07844 * 179.74190 * 11 10 9 13 13 C 1.38153 * 120.12464 * 0.50992 * 12 11 10 14 14 C 1.38900 * 120.04047 * 359.76526 * 13 12 11 15 15 O 1.35743 * 120.03889 * 179.97438 * 14 13 12 16 16 C 1.34834 * 116.99997 * 185.96787 * 15 14 13 17 17 H 1.08001 * 119.99641 * 354.90511 * 16 15 14 18 18 C 1.38658 * 120.00118 * 174.90687 * 16 15 14 19 19 N 1.31551 * 119.99986 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99782 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47149 * 90.00140 * 20 18 16 22 22 H 1.48500 * 109.47138 * 210.00033 * 20 18 16 23 23 H 1.48493 * 109.47530 * 330.00162 * 20 18 16 24 24 C 1.38568 * 120.02302 * 66.74189 * 10 9 7 25 25 H 1.07990 * 120.00237 * 179.97438 * 1 2 3 26 26 H 1.08005 * 119.99631 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47355 * 269.99973 * 3 2 1 28 28 H 1.09002 * 109.47447 * 30.00433 * 3 2 1 29 29 H 1.09003 * 109.47225 * 150.00190 * 3 2 1 30 30 H 1.09010 * 109.46992 * 180.02562 * 5 4 2 31 31 H 1.08994 * 109.47185 * 299.99519 * 5 4 2 32 32 H 1.08993 * 109.47207 * 60.00106 * 5 4 2 33 33 H 1.09008 * 109.47084 * 300.00237 * 6 4 2 34 34 H 1.08995 * 109.46954 * 59.99941 * 6 4 2 35 35 H 1.08998 * 109.47544 * 180.02562 * 6 4 2 36 36 H 1.07997 * 119.96291 * 0.02562 * 11 10 9 37 37 H 1.08000 * 119.93447 * 180.23478 * 12 11 10 38 38 H 1.07994 * 119.98224 * 179.74884 * 13 12 11 39 39 H 0.97000 * 120.00271 * 180.02562 * 19 18 16 40 40 H 1.08006 * 120.06282 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3051 -0.0006 5 6 1.0691 -2.4680 -0.0017 6 6 2.9431 -1.3867 1.2486 7 6 2.9298 -1.3844 -1.2311 8 8 2.9346 -0.4747 -2.0263 9 8 3.6956 -2.4664 -1.4443 10 6 4.5355 -2.4272 -2.5123 11 6 4.3320 -3.2813 -3.5876 12 6 5.1820 -3.2388 -4.6764 13 6 6.2429 -2.3540 -4.6937 14 6 6.4546 -1.5011 -3.6181 15 8 7.4973 -0.6321 -3.6349 16 6 7.7198 0.0788 -2.5110 17 1 7.0338 0.0043 -1.6803 18 6 8.8294 0.9056 -2.4220 19 7 9.6647 0.9967 -3.4341 20 14 9.1372 1.8910 -0.8652 21 1 9.9673 1.0912 0.0710 22 1 9.8495 3.1482 -1.2079 23 1 7.8396 2.2172 -0.2211 24 6 5.5988 -1.5388 -2.5259 25 1 -0.5400 -0.9352 -0.0004 26 1 -0.5400 0.9354 -0.0004 27 1 2.2452 1.6198 -1.0277 28 1 1.4745 2.0648 0.5139 29 1 3.0160 1.1747 0.5138 30 1 1.6142 -3.4120 -0.0017 31 1 0.4422 -2.4109 0.8880 32 1 0.4429 -2.4096 -0.8919 33 1 3.6514 -0.5582 1.2490 34 1 2.3164 -1.3294 2.1386 35 1 3.4884 -2.3305 1.2480 36 1 3.5057 -3.9766 -3.5753 37 1 5.0193 -3.9017 -5.5134 38 1 6.9081 -2.3256 -5.5440 39 1 10.4411 1.5748 -3.3717 40 1 5.7611 -0.8763 -1.6884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000821404167.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:25 Heat of formation + Delta-G solvation = -81.049918 kcal Electronic energy + Delta-G solvation = -23311.148366 eV Core-core repulsion = 19864.070634 eV Total energy + Delta-G solvation = -3447.077732 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.57342 -40.73839 -39.32620 -37.83479 -37.31232 -34.37743 -33.18220 -31.32896 -30.64956 -29.53274 -27.52873 -27.02520 -25.88219 -24.03600 -23.36496 -22.08108 -20.15455 -19.56314 -19.27539 -18.03006 -17.43134 -17.32492 -16.89829 -16.49039 -16.09526 -15.99743 -15.66974 -15.29487 -15.08553 -14.73145 -14.47028 -14.17715 -13.79212 -13.52927 -13.39721 -13.23908 -13.18188 -13.11944 -12.99087 -12.78139 -12.64094 -12.52301 -12.21846 -12.04912 -11.96046 -11.74805 -11.64146 -11.35128 -10.88349 -10.10345 -9.79796 -9.18149 -8.55983 -6.25456 0.10537 0.51955 1.03745 1.09012 1.27474 1.36934 1.44919 1.87436 2.10284 2.70344 3.02445 3.29924 3.37677 3.63167 3.75064 3.90435 3.95635 4.15525 4.23219 4.29016 4.49337 4.56414 4.63596 4.68293 4.69946 4.76205 4.78555 4.84172 4.91152 4.97825 4.98842 5.07746 5.17689 5.25005 5.32133 5.41635 5.48944 5.52157 5.61766 5.83533 5.90980 5.97822 6.71893 6.87603 7.62778 8.66399 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013908 B = 0.005518 C = 0.004284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.802310 B = 5073.418883 C = 6534.813759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.132 4.132 3 C -0.121 4.121 4 C -0.010 4.010 5 C -0.141 4.141 6 C -0.141 4.141 7 C 0.457 3.543 8 O -0.516 6.516 9 O -0.288 6.288 10 C 0.114 3.886 11 C -0.192 4.192 12 C -0.046 4.046 13 C -0.197 4.197 14 C 0.128 3.872 15 O -0.220 6.220 16 C -0.418 4.418 17 H 0.089 0.911 18 C -0.015 4.015 19 N -0.912 5.912 20 Si 1.013 2.987 21 H -0.257 1.257 22 H -0.263 1.263 23 H -0.261 1.261 24 C -0.252 4.252 25 H 0.128 0.872 26 H 0.115 0.885 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.065 0.935 33 H 0.047 0.953 34 H 0.105 0.895 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.131 0.869 39 H 0.276 0.724 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.416 -7.096 9.819 22.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.177 4.177 4 C -0.011 4.011 5 C -0.198 4.198 6 C -0.198 4.198 7 C 0.302 3.698 8 O -0.401 6.401 9 O -0.203 6.203 10 C 0.073 3.927 11 C -0.210 4.210 12 C -0.064 4.064 13 C -0.216 4.216 14 C 0.077 3.923 15 O -0.127 6.127 16 C -0.494 4.494 17 H 0.106 0.894 18 C -0.213 4.213 19 N -0.549 5.549 20 Si 0.832 3.168 21 H -0.181 1.181 22 H -0.188 1.188 23 H -0.185 1.185 24 C -0.271 4.271 25 H 0.146 0.854 26 H 0.133 0.867 27 H 0.066 0.934 28 H 0.104 0.896 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.124 0.876 35 H 0.094 0.906 36 H 0.175 0.825 37 H 0.194 0.806 38 H 0.149 0.851 39 H 0.085 0.915 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.057 -6.649 9.317 21.380 hybrid contribution 0.895 0.966 0.202 1.332 sum -17.163 -5.684 9.519 20.432 Atomic orbital electron populations 1.24132 0.94022 1.04092 0.98139 1.21287 0.95813 0.93144 1.02929 1.20867 1.00070 0.95345 1.01447 1.19730 0.94527 0.97432 0.89448 1.22025 0.97957 0.95261 1.04561 1.21938 0.99411 1.02939 0.95536 1.25022 0.77983 0.78717 0.88091 1.90695 1.64042 1.38370 1.47021 1.84532 1.48552 1.42468 1.44789 1.18484 0.89020 0.97440 0.87761 1.21039 1.04075 1.03713 0.92195 1.21087 0.91280 0.96080 0.97914 1.20705 1.02944 0.99260 0.98711 1.19714 0.88071 0.90070 0.94486 1.83951 1.43087 1.47546 1.38081 1.21660 1.10800 1.24004 0.92954 0.89387 1.26522 0.93898 0.98085 1.02817 1.70150 1.13728 1.38359 1.32675 0.84683 0.79267 0.77473 0.75400 1.18109 1.18764 1.18492 1.21130 0.99747 1.05125 1.01145 0.85425 0.86728 0.93390 0.89616 0.93126 0.90348 0.87501 0.91597 0.93435 0.87595 0.90612 0.82460 0.80577 0.85129 0.91474 0.87565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.84 13.29 67.78 0.90 -1.94 16 2 C -0.13 -3.01 4.42 -16.49 -0.07 -3.08 16 3 C -0.12 -3.15 9.12 71.24 0.65 -2.50 16 4 C -0.01 -0.24 0.82 -53.67 -0.04 -0.29 16 5 C -0.14 -2.23 7.06 71.98 0.51 -1.72 16 6 C -0.14 -2.90 8.23 71.98 0.59 -2.31 16 7 C 0.46 15.71 6.21 71.24 0.44 16.15 16 8 O -0.52 -21.92 14.02 21.97 0.31 -21.61 16 9 O -0.29 -10.28 9.85 4.55 0.04 -10.24 16 10 C 0.11 4.68 5.34 22.49 0.12 4.80 16 11 C -0.19 -6.53 9.99 22.40 0.22 -6.30 16 12 C -0.05 -1.52 10.03 22.24 0.22 -1.30 16 13 C -0.20 -8.45 9.99 22.41 0.22 -8.23 16 14 C 0.13 6.73 6.64 22.56 0.15 6.88 16 15 O -0.22 -13.77 9.76 -22.71 -0.22 -13.99 16 16 C -0.42 -25.62 9.49 67.92 0.64 -24.97 16 17 H 0.09 5.17 5.21 -2.91 -0.02 5.16 16 18 C -0.01 -0.85 5.49 84.84 0.47 -0.39 16 19 N -0.91 -56.58 13.67 21.61 0.30 -56.29 16 20 Si 1.01 44.30 29.55 68.60 2.03 46.33 16 21 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 23 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 24 C -0.25 -12.42 8.30 22.48 0.19 -12.24 16 25 H 0.13 1.58 5.69 -2.92 -0.02 1.56 16 26 H 0.11 1.67 8.04 -2.91 -0.02 1.64 16 27 H 0.05 1.54 7.38 -2.39 -0.02 1.53 16 28 H 0.09 1.73 8.06 -2.39 -0.02 1.71 16 29 H 0.05 1.39 6.64 -2.39 -0.02 1.37 16 30 H 0.08 1.20 8.11 -2.38 -0.02 1.18 16 31 H 0.11 1.04 7.49 -2.39 -0.02 1.02 16 32 H 0.07 1.04 7.50 -2.39 -0.02 1.03 16 33 H 0.05 1.14 6.80 -2.38 -0.02 1.13 16 34 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 36 H 0.16 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.18 4.00 8.06 -2.91 -0.02 3.98 16 38 H 0.13 5.29 8.06 -2.91 -0.02 5.27 16 39 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 40 H 0.11 5.61 5.64 -2.91 -0.02 5.60 16 Total: -1.00 -78.09 337.89 8.71 -69.37 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 1.05 Total: 23.85 kcal Atomic # 6 Polarization: -42.65 SS G_CDS: 5.21 Total: -37.43 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: 0.30 Total: -56.29 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: 0.13 Total: -45.84 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -78.09 8.71 -69.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000821404167.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.675 kcal (2) G-P(sol) polarization free energy of solvation -78.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds