Wall clock time and date at job start Tue Mar 31 2020 06:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34235 * 117.00385 * 179.97438 * 12 11 10 14 14 O 1.20824 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00281 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.63212 * 60.00029 * 15 13 12 17 17 C 1.53314 * 109.63428 * 180.40136 * 15 13 12 18 18 C 1.52746 * 108.54121 * 189.32335 * 17 15 13 19 19 C 1.50441 * 110.58312 * 309.27700 * 18 17 15 20 20 N 1.32889 * 118.52505 * 197.34165 * 19 18 17 21 21 C 1.31605 * 121.06031 * 180.30351 * 20 19 18 22 22 N 1.31809 * 121.67301 * 359.97438 * 21 20 19 23 23 C 1.32191 * 120.63882 * 359.88497 * 22 21 20 24 24 C 1.37770 * 122.58544 * 17.45601 * 19 18 17 25 25 C 1.50341 * 122.80736 * 359.60048 * 24 19 18 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.08997 * 109.63161 * 309.22075 * 17 15 13 34 34 H 1.09000 * 109.62932 * 69.81114 * 17 15 13 35 35 H 1.08990 * 109.35086 * 188.86066 * 18 17 15 36 36 H 1.09000 * 108.96200 * 69.44320 * 18 17 15 37 37 H 1.08002 * 119.16646 * 179.97438 * 21 20 19 38 38 H 1.08008 * 120.36084 * 180.02562 * 23 22 21 39 39 H 1.08994 * 109.30751 * 257.07045 * 25 24 19 40 40 H 1.09002 * 109.30409 * 137.66963 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9110 -7.3311 0.0029 14 8 0.7131 -7.4895 0.0029 15 6 2.8290 -8.5262 0.0042 16 1 3.4590 -8.5030 0.8933 17 6 1.9977 -9.8144 -0.0047 18 6 2.9337 -10.9981 0.2313 19 6 4.1055 -10.9418 -0.7105 20 7 4.8251 -12.0437 -0.8948 21 6 5.8639 -12.0491 -1.7027 22 7 6.2341 -10.9689 -2.3612 23 6 5.5642 -9.8370 -2.2296 24 6 4.4607 -9.7943 -1.3851 25 6 3.7057 -8.5016 -1.2473 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8905 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0452 -0.8885 33 1 1.2492 -9.7727 0.7865 34 1 1.5069 -9.9267 -0.9715 35 1 2.3875 -11.9277 0.0720 36 1 3.2954 -10.9642 1.2590 37 1 6.4275 -12.9617 -1.8294 38 1 5.8712 -8.9547 -2.7717 39 1 3.0766 -8.3563 -2.1253 40 1 4.4143 -7.6764 -1.1747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829952513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:25 Heat of formation + Delta-G solvation = -69.674664 kcal Electronic energy + Delta-G solvation = -21919.884546 eV Core-core repulsion = 18505.592833 eV Total energy + Delta-G solvation = -3414.291713 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.75938 -40.42857 -37.56719 -36.32298 -34.45978 -34.01946 -31.92474 -31.73652 -30.79199 -27.25219 -25.77262 -24.79642 -23.40171 -23.30304 -21.66372 -20.44551 -19.92296 -18.18573 -17.56360 -17.13895 -16.81933 -16.33353 -16.01591 -15.42280 -14.89559 -14.62810 -14.49006 -14.31945 -14.07554 -13.90362 -13.50033 -13.18687 -12.66641 -12.39185 -12.15922 -12.05759 -11.96114 -11.54869 -11.38398 -11.20798 -10.98263 -10.76208 -10.70642 -10.67685 -10.43650 -10.34581 -9.77042 -9.59727 -9.55337 -9.52654 -9.21006 -8.41494 -6.06337 -4.09680 0.52605 0.67539 2.20690 2.74099 3.30286 3.34863 3.37115 3.37247 3.60122 3.84419 4.03566 4.10817 4.22009 4.38826 4.43037 4.61495 4.82535 4.87102 4.98132 5.03250 5.11387 5.26983 5.29566 5.36779 5.43723 5.52069 5.56910 5.64884 5.66936 5.80333 5.95970 6.05769 6.43740 6.48897 6.61321 6.78424 6.93651 7.56319 7.67220 7.72102 7.82887 7.91607 8.32449 8.96349 9.54765 11.05033 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.002530 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.680100 B =11062.946136 C =11841.177870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.109 4.109 11 C 0.067 3.933 12 O -0.356 6.356 13 C 0.462 3.538 14 O -0.507 6.507 15 C -0.082 4.082 16 H 0.113 0.887 17 C -0.105 4.105 18 C -0.072 4.072 19 C 0.179 3.821 20 N -0.521 5.521 21 C 0.289 3.711 22 N -0.522 5.522 23 C 0.154 3.846 24 C -0.177 4.177 25 C -0.065 4.065 26 H 0.262 0.738 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.196 0.804 38 H 0.172 0.828 39 H 0.090 0.910 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.857 -23.611 -1.643 25.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.723 3.277 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.013 4.013 10 C -0.146 4.146 11 C -0.005 4.005 12 O -0.272 6.272 13 C 0.304 3.696 14 O -0.395 6.395 15 C -0.101 4.101 16 H 0.131 0.869 17 C -0.143 4.143 18 C -0.110 4.110 19 C 0.035 3.965 20 N -0.235 5.235 21 C 0.001 3.999 22 N -0.235 5.235 23 C -0.013 4.013 24 C -0.181 4.181 25 C -0.103 4.103 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.097 0.903 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.212 0.788 38 H 0.189 0.811 39 H 0.109 0.891 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.853 -24.349 -1.758 25.968 hybrid contribution -0.106 1.733 0.054 1.737 sum 8.747 -22.616 -1.705 24.309 Atomic orbital electron populations 1.69949 1.06095 1.26922 1.50380 1.25030 0.94882 0.99373 0.95159 0.86604 0.79539 0.82874 0.78680 1.20167 1.21249 1.20165 1.21128 0.93073 0.90680 1.51224 0.92482 1.19046 0.93832 0.90749 0.97672 1.21765 0.99929 0.90980 1.01961 1.23529 0.91211 0.83593 1.02201 1.86495 1.42718 1.15125 1.82900 1.23355 0.88389 0.84995 0.72818 1.90670 1.16857 1.86852 1.45145 1.21061 0.96606 0.91059 1.01358 0.86884 1.21522 0.97233 0.90740 1.04792 1.20442 0.92357 1.00224 0.97953 1.21365 0.94278 0.87815 0.93030 1.68399 1.07473 1.29238 1.18427 1.24915 0.90568 0.96634 0.87817 1.68440 1.31178 1.00203 1.23706 1.23346 0.89207 0.96293 0.92446 1.21100 0.99187 0.97417 1.00380 1.20285 0.98270 0.94245 0.97533 0.92802 0.96256 0.96247 0.92127 0.92146 0.91477 0.91468 0.88949 0.90342 0.88366 0.88724 0.78790 0.81141 0.89146 0.88152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.49 9.11 -34.44 -0.31 -14.81 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 11 C 0.07 1.18 5.47 37.16 0.20 1.38 16 12 O -0.36 -5.38 10.16 -39.27 -0.40 -5.78 16 13 C 0.46 6.16 7.24 36.00 0.26 6.42 16 14 O -0.51 -8.20 15.60 -18.75 -0.29 -8.49 16 15 C -0.08 -0.73 2.65 -91.70 -0.24 -0.98 16 16 H 0.11 0.87 8.10 -51.93 -0.42 0.45 16 17 C -0.10 -0.84 4.71 -26.70 -0.13 -0.97 16 18 C -0.07 -0.51 5.95 -28.14 -0.17 -0.67 16 19 C 0.18 1.59 6.63 -82.43 -0.55 1.05 16 20 N -0.52 -5.04 10.32 -11.00 -0.11 -5.15 16 21 C 0.29 2.53 12.29 -92.30 -1.13 1.40 16 22 N -0.52 -5.00 10.44 -14.54 -0.15 -5.15 16 23 C 0.15 1.29 10.94 -17.11 -0.19 1.10 16 24 C -0.18 -1.48 5.74 -104.68 -0.60 -2.08 16 25 C -0.07 -0.52 4.98 -28.15 -0.14 -0.66 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 30 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.07 1.19 8.13 -51.93 -0.42 0.77 16 32 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 33 H 0.09 0.76 7.81 -51.93 -0.41 0.35 16 34 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.20 1.09 8.06 -52.49 -0.42 0.67 16 38 H 0.17 0.99 8.06 -52.48 -0.42 0.57 16 39 H 0.09 0.72 8.11 -51.93 -0.42 0.30 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 339.86 15.07 5.12 5.12 Total: -1.00 -32.62 339.86 -9.36 -41.97 By element: Atomic # 1 Polarization: 2.00 SS G_CDS: -5.86 Total: -3.86 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -3.38 Total: -9.14 kcal Atomic # 7 Polarization: -36.58 SS G_CDS: 0.47 Total: -36.11 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -0.69 Total: -14.27 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.62 -9.36 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829952513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.700 kcal (2) G-P(sol) polarization free energy of solvation -32.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds