Wall clock time and date at job start Tue Mar 31 2020 06:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46725 * 239.99880 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 O 1.45194 * 109.47339 * 180.02562 * 11 10 9 13 13 C 1.34235 * 117.00385 * 179.97438 * 12 11 10 14 14 O 1.20824 * 119.99671 * 0.02562 * 13 12 11 15 15 C 1.50693 * 120.00281 * 180.02562 * 13 12 11 16 16 H 1.08996 * 109.63212 * 60.00029 * 15 13 12 17 17 C 1.53314 * 109.63428 * 180.40136 * 15 13 12 18 18 C 1.52746 * 108.54121 * 189.32335 * 17 15 13 19 19 C 1.50441 * 110.58312 * 309.27700 * 18 17 15 20 20 N 1.32889 * 118.52505 * 197.34165 * 19 18 17 21 21 C 1.31605 * 121.06031 * 180.30351 * 20 19 18 22 22 N 1.31809 * 121.67301 * 359.97438 * 21 20 19 23 23 C 1.32191 * 120.63882 * 359.88497 * 22 21 20 24 24 C 1.37770 * 122.58544 * 17.45601 * 19 18 17 25 25 C 1.50341 * 122.80736 * 359.60048 * 24 19 18 26 26 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 28 28 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 29 29 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 30 30 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 31 31 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 32 32 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 33 33 H 1.08997 * 109.63161 * 309.22075 * 17 15 13 34 34 H 1.09000 * 109.62932 * 69.81114 * 17 15 13 35 35 H 1.08990 * 109.35086 * 188.86066 * 18 17 15 36 36 H 1.09000 * 108.96200 * 69.44320 * 18 17 15 37 37 H 1.08002 * 119.16646 * 179.97438 * 21 20 19 38 38 H 1.08008 * 120.36084 * 180.02562 * 23 22 21 39 39 H 1.08994 * 109.30751 * 257.07045 * 25 24 19 40 40 H 1.09002 * 109.30409 * 137.66963 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 8 2.4239 -6.0907 0.0018 13 6 1.9110 -7.3311 0.0029 14 8 0.7131 -7.4895 0.0029 15 6 2.8290 -8.5262 0.0042 16 1 3.4590 -8.5030 0.8933 17 6 1.9977 -9.8144 -0.0047 18 6 2.9337 -10.9981 0.2313 19 6 4.1055 -10.9418 -0.7105 20 7 4.8251 -12.0437 -0.8948 21 6 5.8639 -12.0491 -1.7027 22 7 6.2341 -10.9689 -2.3612 23 6 5.5642 -9.8370 -2.2296 24 6 4.4607 -9.7943 -1.3851 25 6 3.7057 -8.5016 -1.2473 26 1 -0.4850 0.8400 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6241 -2.5568 0.8902 29 1 2.8720 -3.6043 -0.8894 30 1 2.8720 -3.6043 0.8905 31 1 0.8540 -5.0446 0.8914 32 1 0.8534 -5.0452 -0.8885 33 1 1.2492 -9.7727 0.7865 34 1 1.5069 -9.9267 -0.9715 35 1 2.3875 -11.9277 0.0720 36 1 3.2954 -10.9642 1.2590 37 1 6.4275 -12.9617 -1.8294 38 1 5.8712 -8.9547 -2.7717 39 1 3.0766 -8.3563 -2.1253 40 1 4.4143 -7.6764 -1.1747 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829952513.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:24 Heat of formation + Delta-G solvation = -87.040572 kcal Electronic energy + Delta-G solvation = -21920.637588 eV Core-core repulsion = 18505.592833 eV Total energy + Delta-G solvation = -3415.044755 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.43606 -41.51648 -38.46081 -37.44317 -35.92751 -35.08764 -33.68093 -32.52742 -31.53274 -29.01276 -26.61598 -25.67798 -24.85974 -24.02086 -22.65257 -22.14634 -20.80337 -19.01225 -18.66990 -18.33857 -17.79688 -17.75978 -17.23129 -16.49716 -16.17283 -15.88406 -15.40792 -15.08683 -14.92533 -14.76120 -14.49738 -14.14904 -14.05678 -13.79692 -13.68869 -13.21393 -12.95859 -12.78526 -12.52977 -12.43856 -12.22086 -12.05293 -12.03943 -11.96277 -11.66392 -11.40777 -11.37227 -11.33906 -11.15534 -10.56093 -10.22492 -10.18849 -8.21151 -6.32606 -0.09857 0.04196 1.12735 1.42098 1.45138 1.52752 1.62575 2.41903 2.73926 3.00265 3.12831 3.24494 3.38930 3.41247 3.56793 3.68451 3.88951 4.02613 4.08237 4.14227 4.23928 4.25622 4.41188 4.44429 4.52903 4.67360 4.75316 4.82053 4.86127 4.91848 5.03202 5.06109 5.09877 5.16944 5.43757 5.46512 5.54672 5.65367 5.81217 5.98642 6.19895 6.68573 6.83665 7.09046 7.36994 8.90779 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029664 B = 0.002530 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.680100 B =11062.946136 C =11841.177870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.093 4.093 11 C 0.077 3.923 12 O -0.353 6.353 13 C 0.463 3.537 14 O -0.537 6.537 15 C -0.073 4.073 16 H 0.134 0.866 17 C -0.100 4.100 18 C -0.065 4.065 19 C 0.169 3.831 20 N -0.538 5.538 21 C 0.282 3.718 22 N -0.541 5.541 23 C 0.150 3.850 24 C -0.179 4.179 25 C -0.060 4.060 26 H 0.264 0.736 27 H -0.004 1.004 28 H -0.004 1.004 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.109 0.891 37 H 0.219 0.781 38 H 0.193 0.807 39 H 0.090 0.910 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.689 -24.048 -1.585 26.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.131 4.131 11 C 0.004 3.996 12 O -0.270 6.270 13 C 0.308 3.692 14 O -0.427 6.427 15 C -0.092 4.092 16 H 0.151 0.849 17 C -0.137 4.137 18 C -0.102 4.102 19 C 0.025 3.975 20 N -0.252 5.252 21 C -0.006 4.006 22 N -0.255 5.255 23 C -0.017 4.017 24 C -0.183 4.183 25 C -0.098 4.098 26 H 0.073 0.927 27 H 0.015 0.985 28 H 0.014 0.986 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.109 0.891 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.127 0.873 37 H 0.235 0.765 38 H 0.210 0.790 39 H 0.108 0.892 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 10.703 -24.808 -1.700 27.072 hybrid contribution -0.696 1.789 0.026 1.920 sum 10.008 -23.019 -1.675 25.156 Atomic orbital electron populations 1.70089 1.07880 1.27972 1.51464 1.26005 0.95772 1.03507 0.94652 0.85463 0.78210 0.77856 0.79306 1.19008 1.21057 1.19046 1.21607 0.93766 0.91878 1.50837 0.91606 1.18936 0.94315 0.92570 0.95389 1.21445 0.98662 0.90368 1.02628 1.23115 0.90969 0.83753 1.01772 1.86485 1.41859 1.15411 1.83213 1.24222 0.88692 0.84998 0.71332 1.90666 1.18473 1.86996 1.46523 1.21176 0.96169 0.89007 1.02862 0.84866 1.21478 0.97254 0.90617 1.04398 1.20422 0.91607 0.99861 0.98308 1.21679 0.94631 0.87911 0.93301 1.68445 1.08059 1.29635 1.19107 1.25435 0.90487 0.97370 0.87271 1.68500 1.31817 1.00795 1.24357 1.23748 0.88927 0.96739 0.92276 1.21091 0.99309 0.97294 1.00573 1.20250 0.98184 0.94513 0.96821 0.92707 0.98544 0.98608 0.91279 0.91487 0.92052 0.91924 0.89137 0.91047 0.87669 0.87339 0.76498 0.79048 0.89202 0.87135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.97 43.36 29.54 68.60 2.03 45.39 16 4 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 7 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 8 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 9 C 0.03 1.29 4.97 29.85 0.15 1.44 16 10 C -0.09 -3.69 5.53 30.59 0.17 -3.52 16 11 C 0.08 2.69 5.47 71.98 0.39 3.08 16 12 O -0.35 -10.20 10.16 -51.47 -0.52 -10.73 16 13 C 0.46 11.80 7.24 71.23 0.52 12.31 16 14 O -0.54 -17.14 15.60 21.97 0.34 -16.79 16 15 C -0.07 -1.17 2.65 -11.49 -0.03 -1.21 16 16 H 0.13 1.67 8.10 -2.39 -0.02 1.65 16 17 C -0.10 -1.44 4.71 30.61 0.14 -1.29 16 18 C -0.06 -0.78 5.95 29.68 0.18 -0.60 16 19 C 0.17 2.70 6.63 42.21 0.28 2.98 16 20 N -0.54 -9.58 10.32 -188.72 -1.95 -11.53 16 21 C 0.28 4.54 12.29 180.94 2.22 6.76 16 22 N -0.54 -9.56 10.44 -199.92 -2.09 -11.64 16 23 C 0.15 2.23 10.94 84.83 0.93 3.16 16 24 C -0.18 -2.65 5.74 -19.90 -0.11 -2.77 16 25 C -0.06 -0.82 4.98 29.68 0.15 -0.67 16 26 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 27 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 28 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 29 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 30 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.06 2.19 8.13 -2.39 -0.02 2.17 16 32 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 33 H 0.09 1.37 7.81 -2.39 -0.02 1.35 16 34 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.22 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.19 1.82 8.06 -2.91 -0.02 1.79 16 39 H 0.09 1.27 8.11 -2.39 -0.02 1.26 16 40 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -69.84 339.86 4.80 -65.04 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.03 Total: 6.14 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: 5.68 Total: -9.85 kcal Atomic # 7 Polarization: -75.44 SS G_CDS: -3.75 Total: -79.19 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.18 Total: -27.52 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -69.84 4.80 -65.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829952513.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.005 kcal (2) G-P(sol) polarization free energy of solvation -69.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds