Wall clock time and date at job start Tue Mar 31 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 119.99924 * 2 1 4 4 O 1.42894 * 109.47463 * 134.99807 * 3 2 1 5 5 C 1.35905 * 117.00410 * 179.97438 * 4 3 2 6 6 C 1.38728 * 120.05625 * 179.97438 * 5 4 3 7 7 C 1.38148 * 119.94593 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.04882 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.93896 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47478 * 90.00413 * 9 8 7 11 11 O 1.20833 * 119.99655 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00432 * 180.27536 * 10 9 8 13 13 C 1.45201 * 117.00137 * 179.71953 * 12 10 9 14 14 H 1.08993 * 109.47491 * 330.00073 * 13 12 10 15 15 C 1.52996 * 109.46934 * 90.00375 * 13 12 10 16 16 C 1.50704 * 109.46907 * 209.99697 * 13 12 10 17 17 H 1.07998 * 120.00571 * 0.02562 * 16 13 12 18 18 C 1.37887 * 119.99671 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00086 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99784 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46605 * 120.00079 * 20 18 16 23 23 H 1.48499 * 109.47279 * 240.00292 * 20 18 16 24 24 C 1.38265 * 120.11889 * 0.25376 * 8 7 6 25 25 C 1.38144 * 120.04962 * 359.45250 * 24 8 7 26 26 H 1.08004 * 120.00070 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00227 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99737 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47330 * 14.99185 * 3 2 1 30 30 H 1.09005 * 109.47408 * 254.99927 * 3 2 1 31 31 H 1.08003 * 120.03224 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.97614 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47523 * 329.99866 * 9 8 7 34 34 H 1.09006 * 109.46998 * 209.99754 * 9 8 7 35 35 H 1.09005 * 109.47320 * 299.99428 * 15 13 12 36 36 H 1.08999 * 109.47835 * 59.99944 * 15 13 12 37 37 H 1.09004 * 109.47062 * 180.02562 * 15 13 12 38 38 H 0.96993 * 119.99970 * 179.97438 * 19 18 16 39 39 H 1.07993 * 119.97521 * 179.70552 * 24 8 7 40 40 H 1.08000 * 120.03025 * 180.25101 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9526 5 6 3.9096 2.3450 1.0782 6 6 4.9597 2.3525 1.9847 7 6 5.7539 3.4758 2.1108 8 6 5.5025 4.5922 1.3348 9 6 6.3700 5.8165 1.4748 10 6 7.5297 5.7226 0.5171 11 8 7.6406 4.7600 -0.2048 12 8 8.4427 6.7054 0.4702 13 6 9.5360 6.5451 -0.4717 14 1 9.7478 5.4844 -0.6055 15 6 9.1448 7.1607 -1.8166 16 6 10.7633 7.2393 0.0604 17 1 10.7256 7.7495 1.0115 18 6 11.9348 7.2221 -0.6666 19 7 11.9810 6.6004 -1.8246 20 14 13.4558 8.0831 -0.0074 21 1 13.1437 8.7034 1.3052 22 1 14.5506 7.0939 0.1608 23 1 13.8824 9.1358 -0.9640 24 6 4.4529 4.5894 0.4347 25 6 3.6596 3.4664 0.3006 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3854 2.1161 0.2658 30 1 2.4755 1.4868 -0.9927 31 1 5.1558 1.4811 2.5919 32 1 6.5713 3.4823 2.8166 33 1 6.7462 5.8804 2.4959 34 1 5.7824 6.7061 1.2477 35 1 8.2572 6.6587 -2.2016 36 1 8.9331 8.2215 -1.6829 37 1 9.9654 7.0400 -2.5239 38 1 12.8049 6.5886 -2.3362 39 1 4.2556 5.4643 -0.1668 40 1 2.8424 3.4632 -0.4055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835158834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:09 Heat of formation + Delta-G solvation = -86.661846 kcal Electronic energy + Delta-G solvation = -21852.804869 eV Core-core repulsion = 18405.483785 eV Total energy + Delta-G solvation = -3447.321084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.33600 -39.44506 -37.78515 -35.63158 -34.45091 -33.24666 -32.05667 -31.04569 -29.59537 -27.66612 -26.35976 -25.30162 -22.85939 -22.35067 -20.99661 -20.28799 -19.47476 -18.30729 -16.90067 -16.71302 -16.52499 -16.07302 -15.56197 -15.21757 -15.03466 -14.67563 -14.44638 -14.15490 -13.65618 -13.48726 -12.97766 -12.95562 -12.55536 -12.34278 -11.99829 -11.68239 -11.61193 -11.47095 -11.19891 -11.14287 -11.04582 -10.82649 -10.80832 -10.34346 -10.27383 -9.90444 -9.59892 -9.49646 -8.97412 -8.87906 -8.48649 -8.10982 -6.17543 -4.24306 1.36168 1.39495 1.66958 3.06228 3.15958 3.24002 3.30591 3.35493 3.55984 4.03642 4.37343 4.44108 4.62848 4.77218 4.80938 4.84137 4.96641 5.04715 5.15417 5.26601 5.36545 5.41050 5.54465 5.66969 5.73013 5.84641 6.03461 6.10078 6.18244 6.25073 6.33289 6.64275 6.65724 6.74575 6.89945 6.93701 7.20548 7.32294 7.61869 7.74828 7.96878 8.16204 8.67742 8.91890 9.41210 10.89943 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.002584 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.292364 B =10832.346947 C =10975.662606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.153 4.153 3 C 0.086 3.914 4 O -0.314 6.314 5 C 0.125 3.875 6 C -0.149 4.149 7 C -0.063 4.063 8 C -0.101 4.101 9 C -0.075 4.075 10 C 0.450 3.550 11 O -0.514 6.514 12 O -0.359 6.359 13 C 0.215 3.785 14 H 0.046 0.954 15 C -0.154 4.154 16 C -0.519 4.519 17 H 0.069 0.931 18 C 0.061 3.939 19 N -0.889 5.889 20 Si 0.912 3.088 21 H -0.270 1.270 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.063 4.063 25 C -0.208 4.208 26 H 0.107 0.893 27 H 0.099 0.901 28 H 0.120 0.880 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.107 0.893 35 H 0.015 0.985 36 H 0.036 0.964 37 H 0.099 0.901 38 H 0.265 0.735 39 H 0.125 0.875 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.457 -7.765 5.469 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.171 4.171 3 C 0.011 3.989 4 O -0.228 6.228 5 C 0.080 3.920 6 C -0.168 4.168 7 C -0.081 4.081 8 C -0.101 4.101 9 C -0.112 4.112 10 C 0.292 3.708 11 O -0.404 6.404 12 O -0.275 6.275 13 C 0.162 3.838 14 H 0.064 0.936 15 C -0.212 4.212 16 C -0.557 4.557 17 H 0.087 0.913 18 C -0.141 4.141 19 N -0.527 5.527 20 Si 0.739 3.261 21 H -0.195 1.195 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.081 4.081 25 C -0.226 4.226 26 H 0.125 0.875 27 H 0.118 0.882 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.127 0.873 34 H 0.125 0.875 35 H 0.034 0.966 36 H 0.055 0.945 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.143 0.857 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.237 -8.250 5.175 22.458 hybrid contribution 0.801 0.459 -0.189 0.942 sum -19.436 -7.791 4.986 21.525 Atomic orbital electron populations 1.23875 0.95411 1.02535 0.99323 1.22695 0.95655 0.97900 1.00878 1.21810 0.87959 0.96655 0.92495 1.86060 1.42159 1.36026 1.58535 1.18956 0.91621 0.85826 0.95619 1.20343 0.95843 0.99767 1.00848 1.20847 0.97539 0.91518 0.98175 1.19284 0.96757 0.95508 0.98571 1.20249 0.93278 0.97559 1.00145 1.23247 0.83756 0.81334 0.82430 1.90621 1.75171 1.32796 1.41772 1.86476 1.35639 1.44854 1.60538 1.20618 0.80576 0.98423 0.84154 0.93613 1.22153 1.00387 0.98689 0.99956 1.21077 0.93344 1.34900 1.06426 0.91255 1.24909 0.98943 0.95434 0.94842 1.69911 1.27682 1.42351 1.12775 0.86220 0.81773 0.79113 0.79027 1.19462 1.20771 1.20738 1.20790 0.93732 0.97653 0.95967 1.21128 1.03791 0.94235 1.03475 0.87471 0.88245 0.86229 0.91502 0.90923 0.85221 0.85189 0.87323 0.87511 0.96583 0.94466 0.88303 0.92476 0.85747 0.85663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 14.31 29.01 0.42 -0.64 16 2 C -0.15 -1.18 9.89 -36.03 -0.36 -1.53 16 3 C 0.09 0.77 5.15 36.00 0.19 0.96 16 4 O -0.31 -3.82 10.12 -19.44 -0.20 -4.02 16 5 C 0.12 1.64 6.69 -39.22 -0.26 1.37 16 6 C -0.15 -1.97 9.99 -39.43 -0.39 -2.36 16 7 C -0.06 -0.85 9.69 -39.60 -0.38 -1.24 16 8 C -0.10 -1.44 4.38 -104.60 -0.46 -1.90 16 9 C -0.07 -1.08 5.94 -29.04 -0.17 -1.25 16 10 C 0.45 9.34 7.92 36.00 0.29 9.63 16 11 O -0.51 -12.31 15.25 -18.76 -0.29 -12.60 16 12 O -0.36 -8.55 9.86 -39.24 -0.39 -8.93 16 13 C 0.21 5.84 2.56 -27.88 -0.07 5.77 16 14 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 15 C -0.15 -3.96 9.32 37.16 0.35 -3.61 16 16 C -0.52 -14.70 8.90 -34.43 -0.31 -15.00 16 17 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 18 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 19 N -0.89 -25.52 11.32 55.43 0.63 -24.89 16 20 Si 0.91 21.18 29.54 -169.99 -5.02 16.16 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 C -0.06 -0.85 9.69 -39.61 -0.38 -1.23 16 25 C -0.21 -2.58 9.04 -39.43 -0.36 -2.94 16 26 H 0.11 0.50 8.06 -52.48 -0.42 0.08 16 27 H 0.10 0.51 7.90 -52.49 -0.41 0.10 16 28 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 29 H 0.07 0.52 7.38 -51.93 -0.38 0.13 16 30 H 0.07 0.62 7.66 -51.93 -0.40 0.22 16 31 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 33 H 0.11 1.33 8.08 -51.93 -0.42 0.91 16 34 H 0.11 1.28 8.08 -51.93 -0.42 0.86 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.10 2.71 6.07 -51.93 -0.32 2.40 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 40 H 0.13 1.24 6.30 -52.49 -0.33 0.91 16 LS Contribution 347.52 15.07 5.24 5.24 Total: -1.00 -32.66 347.52 -7.59 -40.25 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.56 Total: 1.18 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -2.01 Total: -12.39 kcal Atomic # 7 Polarization: -25.52 SS G_CDS: 0.63 Total: -24.89 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.87 Total: -25.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.66 -7.59 -40.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.408 kcal (2) G-P(sol) polarization free energy of solvation -32.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds