Wall clock time and date at job start Tue Mar 31 2020 06:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50693 * 119.99924 * 2 1 4 4 O 1.42894 * 109.47463 * 134.99807 * 3 2 1 5 5 C 1.35905 * 117.00410 * 179.97438 * 4 3 2 6 6 C 1.38728 * 120.05625 * 179.97438 * 5 4 3 7 7 C 1.38148 * 119.94593 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.04882 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.93896 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47478 * 90.00413 * 9 8 7 11 11 O 1.20833 * 119.99655 * 359.97438 * 10 9 8 12 12 O 1.34222 * 120.00432 * 180.27536 * 10 9 8 13 13 C 1.45201 * 117.00137 * 179.71953 * 12 10 9 14 14 H 1.08993 * 109.47491 * 330.00073 * 13 12 10 15 15 C 1.52996 * 109.46934 * 90.00375 * 13 12 10 16 16 C 1.50704 * 109.46907 * 209.99697 * 13 12 10 17 17 H 1.07998 * 120.00571 * 0.02562 * 16 13 12 18 18 C 1.37887 * 119.99671 * 179.97438 * 16 13 12 19 19 N 1.31514 * 120.00086 * 0.02562 * 18 16 13 20 20 Si 1.86801 * 119.99784 * 179.97438 * 18 16 13 21 21 H 1.48499 * 109.46979 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.46605 * 120.00079 * 20 18 16 23 23 H 1.48499 * 109.47279 * 240.00292 * 20 18 16 24 24 C 1.38265 * 120.11889 * 0.25376 * 8 7 6 25 25 C 1.38144 * 120.04962 * 359.45250 * 24 8 7 26 26 H 1.08004 * 120.00070 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00227 * 0.02562 * 1 2 3 28 28 H 1.08001 * 119.99737 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47330 * 14.99185 * 3 2 1 30 30 H 1.09005 * 109.47408 * 254.99927 * 3 2 1 31 31 H 1.08003 * 120.03224 * 359.97438 * 6 5 4 32 32 H 1.07998 * 119.97614 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.47523 * 329.99866 * 9 8 7 34 34 H 1.09006 * 109.46998 * 209.99754 * 9 8 7 35 35 H 1.09005 * 109.47320 * 299.99428 * 15 13 12 36 36 H 1.08999 * 109.47835 * 59.99944 * 15 13 12 37 37 H 1.09004 * 109.47062 * 180.02562 * 15 13 12 38 38 H 0.96993 * 119.99970 * 179.97438 * 19 18 16 39 39 H 1.07993 * 119.97521 * 179.70552 * 24 8 7 40 40 H 1.08000 * 120.03025 * 180.25101 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1266 1.2413 0.9526 5 6 3.9096 2.3450 1.0782 6 6 4.9597 2.3525 1.9847 7 6 5.7539 3.4758 2.1108 8 6 5.5025 4.5922 1.3348 9 6 6.3700 5.8165 1.4748 10 6 7.5297 5.7226 0.5171 11 8 7.6406 4.7600 -0.2048 12 8 8.4427 6.7054 0.4702 13 6 9.5360 6.5451 -0.4717 14 1 9.7478 5.4844 -0.6055 15 6 9.1448 7.1607 -1.8166 16 6 10.7633 7.2393 0.0604 17 1 10.7256 7.7495 1.0115 18 6 11.9348 7.2221 -0.6666 19 7 11.9810 6.6004 -1.8246 20 14 13.4558 8.0831 -0.0074 21 1 13.1437 8.7034 1.3052 22 1 14.5506 7.0939 0.1608 23 1 13.8824 9.1358 -0.9640 24 6 4.4529 4.5894 0.4347 25 6 3.6596 3.4664 0.3006 26 1 -0.5400 -0.9353 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 1.3854 2.1161 0.2658 30 1 2.4755 1.4868 -0.9927 31 1 5.1558 1.4811 2.5919 32 1 6.5713 3.4823 2.8166 33 1 6.7462 5.8804 2.4959 34 1 5.7824 6.7061 1.2477 35 1 8.2572 6.6587 -2.2016 36 1 8.9331 8.2215 -1.6829 37 1 9.9654 7.0400 -2.5239 38 1 12.8049 6.5886 -2.3362 39 1 4.2556 5.4643 -0.1668 40 1 2.8424 3.4632 -0.4055 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835158834.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:09 Heat of formation + Delta-G solvation = -104.111132 kcal Electronic energy + Delta-G solvation = -21853.561526 eV Core-core repulsion = 18405.483785 eV Total energy + Delta-G solvation = -3448.077742 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.50209 -40.91841 -38.83232 -37.43683 -35.31628 -35.09346 -33.21407 -32.02328 -31.60833 -28.67602 -27.46562 -27.22064 -24.04617 -23.71800 -22.41148 -21.17709 -20.85429 -19.21475 -18.81626 -18.46087 -17.47773 -17.21522 -17.02571 -16.71057 -16.45633 -15.97345 -15.51625 -15.27795 -14.84504 -14.53741 -14.39274 -14.14967 -13.88626 -13.68785 -13.40397 -13.29062 -13.00161 -12.84603 -12.82339 -12.57633 -12.38916 -12.14044 -12.12520 -12.08158 -11.71631 -11.56344 -11.30492 -10.96501 -10.60093 -10.45438 -9.96595 -9.11914 -8.28554 -6.45387 0.33292 0.38636 1.12167 1.40864 1.42721 1.43524 1.57230 2.08941 2.37404 2.42692 2.86921 3.02170 3.67399 3.75218 3.89959 3.94646 4.05881 4.15459 4.22395 4.31116 4.38583 4.48738 4.55282 4.58475 4.66525 4.74082 4.78454 4.84783 4.95599 5.05950 5.16980 5.26497 5.33288 5.49763 5.59777 5.61184 5.63238 5.64654 5.79765 5.94330 6.13071 6.41721 6.61417 7.02910 7.27423 8.79326 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038175 B = 0.002584 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.292364 B =10832.346947 C =10975.662606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.179 4.179 3 C 0.079 3.921 4 O -0.327 6.327 5 C 0.118 3.882 6 C -0.163 4.163 7 C -0.073 4.073 8 C -0.122 4.122 9 C -0.060 4.060 10 C 0.445 3.555 11 O -0.551 6.551 12 O -0.364 6.364 13 C 0.217 3.783 14 H 0.004 0.996 15 C -0.141 4.141 16 C -0.546 4.546 17 H 0.069 0.931 18 C 0.013 3.987 19 N -0.918 5.918 20 Si 0.985 3.015 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.272 1.272 24 C -0.072 4.072 25 C -0.211 4.211 26 H 0.123 0.877 27 H 0.111 0.889 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.141 0.859 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.022 0.978 36 H 0.047 0.953 37 H 0.079 0.921 38 H 0.270 0.730 39 H 0.140 0.860 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.584 -7.036 6.264 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.197 4.197 3 C 0.005 3.995 4 O -0.241 6.241 5 C 0.073 3.927 6 C -0.182 4.182 7 C -0.090 4.090 8 C -0.123 4.123 9 C -0.097 4.097 10 C 0.290 3.710 11 O -0.442 6.442 12 O -0.281 6.281 13 C 0.163 3.837 14 H 0.022 0.978 15 C -0.199 4.199 16 C -0.583 4.583 17 H 0.087 0.913 18 C -0.187 4.187 19 N -0.557 5.557 20 Si 0.808 3.192 21 H -0.185 1.185 22 H -0.202 1.202 23 H -0.197 1.197 24 C -0.090 4.090 25 C -0.229 4.229 26 H 0.141 0.859 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.099 0.901 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.041 0.959 36 H 0.066 0.934 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.157 0.843 40 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -21.397 -7.525 5.977 23.456 hybrid contribution 1.003 0.105 -0.460 1.108 sum -20.394 -7.421 5.517 22.393 Atomic orbital electron populations 1.24124 0.94815 1.03851 0.96505 1.22681 0.96289 0.97234 1.03469 1.22047 0.87491 0.98005 0.91932 1.86053 1.42822 1.35790 1.59434 1.19156 0.91690 0.86337 0.95527 1.20573 0.96105 1.00157 1.01348 1.21065 0.97907 0.91587 0.98488 1.19396 0.97437 0.95741 0.99677 1.20368 0.90823 0.99102 0.99413 1.24543 0.84009 0.79865 0.82624 1.90603 1.76009 1.33990 1.43619 1.86471 1.35588 1.46192 1.59848 1.20304 0.81959 0.95871 0.85539 0.97797 1.21970 0.99799 0.99249 0.98884 1.21351 0.94440 1.35701 1.06841 0.91267 1.25881 1.02084 0.95801 0.94915 1.70033 1.28771 1.43012 1.13842 0.85109 0.77319 0.78043 0.78771 1.18529 1.20243 1.19699 1.21073 0.93603 0.98546 0.95777 1.21399 1.04255 0.93664 1.03603 0.85925 0.87119 0.86602 0.90082 0.90804 0.84152 0.84195 0.84732 0.84446 0.95868 0.93389 0.90273 0.92053 0.84266 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 14.31 67.78 0.97 -0.58 16 2 C -0.18 -2.55 9.89 25.65 0.25 -2.29 16 3 C 0.08 1.34 5.15 71.23 0.37 1.71 16 4 O -0.33 -7.75 10.12 -92.48 -0.94 -8.69 16 5 C 0.12 3.02 6.69 22.51 0.15 3.17 16 6 C -0.16 -4.24 9.99 22.37 0.22 -4.02 16 7 C -0.07 -1.93 9.69 22.25 0.22 -1.72 16 8 C -0.12 -3.36 4.38 -19.85 -0.09 -3.45 16 9 C -0.06 -1.64 5.94 29.10 0.17 -1.46 16 10 C 0.44 18.43 7.92 71.23 0.56 18.99 16 11 O -0.55 -26.96 15.25 21.94 0.33 -26.62 16 12 O -0.36 -17.45 9.86 -51.34 -0.51 -17.96 16 13 C 0.22 12.06 2.56 29.85 0.08 12.14 16 14 H 0.00 0.26 7.16 -2.39 -0.02 0.25 16 15 C -0.14 -7.37 9.32 71.98 0.67 -6.70 16 16 C -0.55 -31.20 8.90 25.60 0.23 -30.97 16 17 H 0.07 3.85 7.81 -2.91 -0.02 3.83 16 18 C 0.01 0.70 5.30 84.66 0.45 1.15 16 19 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 20 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 21 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 24 C -0.07 -1.83 9.69 22.25 0.22 -1.61 16 25 C -0.21 -4.97 9.04 22.37 0.20 -4.77 16 26 H 0.12 0.84 8.06 -2.91 -0.02 0.81 16 27 H 0.11 0.85 7.90 -2.91 -0.02 0.82 16 28 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 29 H 0.08 1.10 7.38 -2.39 -0.02 1.08 16 30 H 0.07 1.19 7.66 -2.38 -0.02 1.17 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 32 H 0.14 3.28 8.06 -2.91 -0.02 3.26 16 33 H 0.13 2.98 8.08 -2.39 -0.02 2.96 16 34 H 0.14 2.91 8.08 -2.38 -0.02 2.89 16 35 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 4.44 6.07 -2.38 -0.01 4.43 16 38 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.15 2.66 6.30 -2.91 -0.02 2.64 16 Total: -1.00 -71.51 347.52 6.86 -64.65 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: 1.02 Total: 17.09 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 4.67 Total: -20.42 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: 0.24 Total: -53.15 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -1.11 Total: -53.27 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -71.51 6.86 -64.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835158834.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.460 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds