Wall clock time and date at job start Tue Mar 31 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48496 * 109.46984 * 269.99488 * 3 2 1 5 5 H 1.48494 * 109.47324 * 30.00152 * 3 2 1 6 6 H 1.48500 * 109.46806 * 149.99786 * 3 2 1 7 7 C 1.37878 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99618 * 181.94684 * 7 2 1 9 9 C 1.50705 * 120.00179 * 1.95226 * 7 2 1 10 10 C 1.52999 * 115.55035 * 84.64936 * 9 7 2 11 11 O 1.45192 * 109.47145 * 56.75113 * 10 9 7 12 12 C 1.34731 * 116.99729 * 184.22515 * 11 10 9 13 13 O 1.21487 * 120.00511 * 5.68697 * 12 11 10 14 14 C 1.47587 * 119.99979 * 185.68425 * 12 11 10 15 15 C 1.41680 * 126.50762 * 174.73434 * 14 12 11 16 16 C 1.34685 * 105.34199 * 180.02562 * 15 14 12 17 17 N 1.35519 * 107.72126 * 0.04532 * 16 15 14 18 18 N 1.28424 * 109.73092 * 359.93580 * 17 16 15 19 19 C 1.46999 * 123.90162 * 179.91457 * 17 16 15 20 20 C 1.53158 * 108.88271 * 342.32917 * 19 17 16 21 21 C 1.53150 * 109.59080 * 51.13528 * 20 19 17 22 22 C 1.50798 * 127.53138 * 180.02562 * 16 15 14 23 23 C 1.53001 * 117.49446 * 230.31896 * 9 7 2 24 24 C 1.53001 * 117.49400 * 298.97752 * 9 7 2 25 25 H 0.97001 * 119.99929 * 5.02410 * 1 2 3 26 26 H 1.09001 * 109.46920 * 296.75353 * 10 9 7 27 27 H 1.08998 * 109.46885 * 176.75468 * 10 9 7 28 28 H 1.08010 * 127.32938 * 359.97438 * 15 14 12 29 29 H 1.08996 * 109.56576 * 102.18559 * 19 17 16 30 30 H 1.08997 * 109.56470 * 222.42270 * 19 17 16 31 31 H 1.08999 * 109.45992 * 291.09520 * 20 19 17 32 32 H 1.08992 * 109.44264 * 171.16586 * 20 19 17 33 33 H 1.09004 * 109.53623 * 170.52037 * 21 20 19 34 34 H 1.08997 * 109.54246 * 50.26163 * 21 20 19 35 35 H 1.08997 * 109.71745 * 44.78738 * 22 16 15 36 36 H 1.08998 * 109.71444 * 284.14259 * 22 16 15 37 37 H 1.09000 * 117.49794 * 215.00085 * 23 9 7 38 38 H 1.08995 * 117.49928 * 0.02562 * 23 9 7 39 39 H 1.08995 * 117.50153 * 359.97438 * 24 9 7 40 40 H 1.09000 * 117.49379 * 144.97824 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0323 9 6 1.2515 -2.4989 -0.0433 10 6 0.8509 -2.9830 -1.4383 11 8 2.0358 -3.0978 -2.2696 12 6 1.8468 -3.4306 -3.5614 13 8 0.7203 -3.5186 -4.0075 14 6 3.0084 -3.6883 -4.4346 15 6 2.9703 -4.1457 -5.7750 16 6 4.2584 -4.2331 -6.1585 17 7 5.0277 -3.8516 -5.1101 18 7 4.2793 -3.5372 -4.1149 19 6 6.4969 -3.8153 -5.1415 20 6 6.9887 -4.6647 -6.3173 21 6 6.2600 -4.2420 -7.5963 22 6 4.7898 -4.6712 -7.5000 23 6 1.6181 -3.5612 0.9950 24 6 0.2943 -2.8012 1.1114 25 1 -0.4850 0.8368 -0.0736 26 1 0.1606 -2.2684 -1.8866 27 1 0.3664 -3.9562 -1.3599 28 1 2.0946 -4.3762 -6.3637 29 1 6.8340 -2.7865 -5.2675 30 1 6.8920 -4.2173 -4.2086 31 1 6.7864 -5.7165 -6.1151 32 1 8.0612 -4.5200 -6.4459 33 1 6.7247 -4.7237 -8.4567 34 1 6.3176 -3.1593 -7.7078 35 1 4.2155 -4.1970 -8.2958 36 1 4.7163 -5.7551 -7.5884 37 1 1.5738 -4.6050 0.6842 38 1 2.4034 -3.3162 1.7100 39 1 0.2095 -2.0567 1.9029 40 1 -0.6209 -3.3447 0.8771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835189065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:03 Heat of formation + Delta-G solvation = 11.582849 kcal Electronic energy + Delta-G solvation = -22775.674383 eV Core-core repulsion = 19364.906260 eV Total energy + Delta-G solvation = -3410.768123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.76668 -39.36310 -36.95030 -36.56216 -35.08386 -33.20954 -31.86155 -30.58704 -28.82370 -27.00834 -25.35438 -24.66021 -23.35377 -22.22656 -21.07709 -20.29654 -19.18822 -19.06853 -16.97683 -16.79193 -16.39346 -16.19135 -15.36944 -15.29594 -14.78578 -14.53521 -14.46315 -14.23160 -13.81089 -13.62396 -13.10959 -12.91316 -12.31953 -12.02201 -11.96957 -11.57534 -11.53676 -11.47160 -11.37918 -10.90841 -10.76897 -10.61135 -10.47601 -10.21714 -10.10837 -9.73687 -9.43320 -9.03912 -8.91916 -8.83706 -8.35974 -8.08794 -5.97118 -4.02267 1.71038 2.11822 2.35381 3.35658 3.41463 3.42815 3.45504 3.63694 4.02323 4.22809 4.29857 4.44654 4.47897 4.81403 4.86336 4.98363 5.14608 5.23385 5.30469 5.31565 5.35452 5.42125 5.48853 5.61310 5.72374 5.73727 5.91295 6.06266 6.29451 6.38283 6.45065 6.58510 6.71946 6.79042 6.83274 7.11714 7.28218 7.43106 7.57452 7.96040 7.99531 8.45222 8.58740 8.99179 9.62844 11.11962 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.004025 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.632236 B = 6954.863904 C = 7501.005308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.482 4.482 8 H 0.063 0.937 9 C 0.036 3.964 10 C 0.115 3.885 11 O -0.317 6.317 12 C 0.545 3.455 13 O -0.515 6.515 14 C 0.006 3.994 15 C -0.174 4.174 16 C 0.005 3.995 17 N -0.283 5.283 18 N -0.225 5.225 19 C 0.120 3.880 20 C -0.135 4.135 21 C -0.128 4.128 22 C -0.050 4.050 23 C -0.207 4.207 24 C -0.141 4.141 25 H 0.260 0.740 26 H 0.074 0.926 27 H 0.040 0.960 28 H 0.163 0.837 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.082 -10.242 -15.181 22.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.520 4.520 8 H 0.081 0.919 9 C 0.035 3.965 10 C 0.041 3.959 11 O -0.231 6.231 12 C 0.387 3.613 13 O -0.403 6.403 14 C -0.153 4.153 15 C -0.202 4.202 16 C -0.118 4.118 17 N -0.074 5.074 18 N -0.060 5.060 19 C 0.001 3.999 20 C -0.174 4.174 21 C -0.165 4.165 22 C -0.088 4.088 23 C -0.245 4.245 24 C -0.178 4.178 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.181 0.819 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.096 0.904 32 H 0.113 0.887 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.386 -9.767 -14.276 21.872 hybrid contribution -0.311 0.779 -0.627 1.048 sum 13.075 -8.987 -14.904 21.768 Atomic orbital electron populations 1.69989 1.05792 1.26809 1.49552 1.24992 0.94872 0.98951 0.94631 0.86602 0.79929 0.83474 0.78143 1.20690 1.21262 1.19762 1.20386 0.92616 0.88232 1.50729 0.91915 1.18760 0.99357 0.93949 0.84388 1.22889 0.83751 0.98440 0.90804 1.86676 1.39815 1.77644 1.18957 1.19618 0.86227 0.73447 0.81993 1.90794 1.24038 1.49368 1.76131 1.20995 0.89903 1.09873 0.94508 1.21267 0.96558 1.07650 0.94682 1.21239 0.90807 1.06763 0.92993 1.45865 1.07467 1.46263 1.07760 1.73744 1.02492 1.16534 1.13277 1.22150 0.73439 1.02819 1.01540 1.21936 1.01344 1.00428 0.93657 1.21702 0.94838 1.02235 0.97759 1.20324 0.95686 1.01757 0.91043 1.23040 0.99736 0.95661 1.06017 1.22520 0.91214 1.01398 1.02692 0.93010 0.90730 0.94156 0.81917 0.88812 0.87926 0.90356 0.88739 0.90122 0.90986 0.89075 0.89545 0.91594 0.90136 0.89222 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.80 12.72 55.43 0.71 -25.09 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.84 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.48 -13.79 8.62 -34.44 -0.30 -14.08 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.04 0.94 1.71 -155.66 -0.27 0.67 16 10 C 0.11 2.89 5.43 37.16 0.20 3.09 16 11 O -0.32 -7.87 10.01 -40.58 -0.41 -8.27 16 12 C 0.54 12.31 7.96 34.54 0.27 12.58 16 13 O -0.52 -12.20 16.64 -19.26 -0.32 -12.52 16 14 C 0.01 0.11 7.17 -82.70 -0.59 -0.48 16 15 C -0.17 -2.65 10.75 -39.53 -0.43 -3.08 16 16 C 0.00 0.06 6.57 -82.17 -0.54 -0.48 16 17 N -0.28 -3.83 3.74 -56.71 -0.21 -4.04 16 18 N -0.22 -4.11 12.04 33.45 0.40 -3.70 16 19 C 0.12 1.02 7.17 -3.69 -0.03 1.00 16 20 C -0.14 -0.71 5.91 -26.57 -0.16 -0.87 16 21 C -0.13 -0.68 5.98 -26.42 -0.16 -0.84 16 22 C -0.05 -0.36 6.28 -27.60 -0.17 -0.53 16 23 C -0.21 -4.74 9.94 -26.69 -0.27 -5.01 16 24 C -0.14 -3.40 9.26 -26.69 -0.25 -3.65 16 25 H 0.26 7.26 8.32 -40.82 -0.34 6.92 16 26 H 0.07 2.04 7.98 -51.93 -0.41 1.62 16 27 H 0.04 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.16 2.18 8.06 -52.48 -0.42 1.76 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.43 8.11 -51.93 -0.42 0.00 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.42 8.12 -51.93 -0.42 0.00 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 39 H 0.09 2.28 8.14 -51.93 -0.42 1.86 16 40 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 LS Contribution 342.12 15.07 5.16 5.16 Total: -1.00 -34.28 342.12 -8.34 -42.62 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.87 Total: -1.32 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -2.77 Total: -9.84 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 0.90 Total: -32.84 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -0.73 Total: -20.79 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.28 -8.34 -42.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835189065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.199 kcal (2) G-P(sol) polarization free energy of solvation -34.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds