Wall clock time and date at job start Tue Mar 31 2020 06:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00069 * 2 1 4 4 H 1.48496 * 109.46984 * 269.99488 * 3 2 1 5 5 H 1.48494 * 109.47324 * 30.00152 * 3 2 1 6 6 H 1.48500 * 109.46806 * 149.99786 * 3 2 1 7 7 C 1.37878 * 119.99536 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99618 * 181.94684 * 7 2 1 9 9 C 1.50705 * 120.00179 * 1.95226 * 7 2 1 10 10 C 1.52999 * 115.55035 * 84.64936 * 9 7 2 11 11 O 1.45192 * 109.47145 * 56.75113 * 10 9 7 12 12 C 1.34731 * 116.99729 * 184.22515 * 11 10 9 13 13 O 1.21487 * 120.00511 * 5.68697 * 12 11 10 14 14 C 1.47587 * 119.99979 * 185.68425 * 12 11 10 15 15 C 1.41680 * 126.50762 * 174.73434 * 14 12 11 16 16 C 1.34685 * 105.34199 * 180.02562 * 15 14 12 17 17 N 1.35519 * 107.72126 * 0.04532 * 16 15 14 18 18 N 1.28424 * 109.73092 * 359.93580 * 17 16 15 19 19 C 1.46999 * 123.90162 * 179.91457 * 17 16 15 20 20 C 1.53158 * 108.88271 * 342.32917 * 19 17 16 21 21 C 1.53150 * 109.59080 * 51.13528 * 20 19 17 22 22 C 1.50798 * 127.53138 * 180.02562 * 16 15 14 23 23 C 1.53001 * 117.49446 * 230.31896 * 9 7 2 24 24 C 1.53001 * 117.49400 * 298.97752 * 9 7 2 25 25 H 0.97001 * 119.99929 * 5.02410 * 1 2 3 26 26 H 1.09001 * 109.46920 * 296.75353 * 10 9 7 27 27 H 1.08998 * 109.46885 * 176.75468 * 10 9 7 28 28 H 1.08010 * 127.32938 * 359.97438 * 15 14 12 29 29 H 1.08996 * 109.56576 * 102.18559 * 19 17 16 30 30 H 1.08997 * 109.56470 * 222.42270 * 19 17 16 31 31 H 1.08999 * 109.45992 * 291.09520 * 20 19 17 32 32 H 1.08992 * 109.44264 * 171.16586 * 20 19 17 33 33 H 1.09004 * 109.53623 * 170.52037 * 21 20 19 34 34 H 1.08997 * 109.54246 * 50.26163 * 21 20 19 35 35 H 1.08997 * 109.71745 * 44.78738 * 22 16 15 36 36 H 1.08998 * 109.71444 * 284.14259 * 22 16 15 37 37 H 1.09000 * 117.49794 * 215.00085 * 23 9 7 38 38 H 1.08995 * 117.49928 * 0.02562 * 23 9 7 39 39 H 1.08995 * 117.50153 * 359.97438 * 24 9 7 40 40 H 1.09000 * 117.49379 * 144.97824 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0840 -1.1944 0.0323 9 6 1.2515 -2.4989 -0.0433 10 6 0.8509 -2.9830 -1.4383 11 8 2.0358 -3.0978 -2.2696 12 6 1.8468 -3.4306 -3.5614 13 8 0.7203 -3.5186 -4.0075 14 6 3.0084 -3.6883 -4.4346 15 6 2.9703 -4.1457 -5.7750 16 6 4.2584 -4.2331 -6.1585 17 7 5.0277 -3.8516 -5.1101 18 7 4.2793 -3.5372 -4.1149 19 6 6.4969 -3.8153 -5.1415 20 6 6.9887 -4.6647 -6.3173 21 6 6.2600 -4.2420 -7.5963 22 6 4.7898 -4.6712 -7.5000 23 6 1.6181 -3.5612 0.9950 24 6 0.2943 -2.8012 1.1114 25 1 -0.4850 0.8368 -0.0736 26 1 0.1606 -2.2684 -1.8866 27 1 0.3664 -3.9562 -1.3599 28 1 2.0946 -4.3762 -6.3637 29 1 6.8340 -2.7865 -5.2675 30 1 6.8920 -4.2173 -4.2086 31 1 6.7864 -5.7165 -6.1151 32 1 8.0612 -4.5200 -6.4459 33 1 6.7247 -4.7237 -8.4567 34 1 6.3176 -3.1593 -7.7078 35 1 4.2155 -4.1970 -8.2958 36 1 4.7163 -5.7551 -7.5884 37 1 1.5738 -4.6050 0.6842 38 1 2.4034 -3.3162 1.7100 39 1 0.2095 -2.0567 1.9029 40 1 -0.6209 -3.3447 0.8771 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835189065.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:03 Heat of formation + Delta-G solvation = -8.748007 kcal Electronic energy + Delta-G solvation = -22776.555995 eV Core-core repulsion = 19364.906260 eV Total energy + Delta-G solvation = -3411.649735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.89482 -41.16799 -38.60234 -37.52776 -36.97109 -34.12198 -34.03220 -31.63072 -29.72873 -28.82880 -27.41517 -25.74367 -24.51253 -23.08750 -22.95538 -21.61298 -21.21769 -20.20182 -18.55783 -18.10429 -17.87068 -17.56899 -17.16644 -16.82688 -16.58285 -15.71431 -15.44332 -15.02515 -14.94623 -14.81434 -14.66272 -14.08747 -14.04566 -13.64746 -13.57724 -12.97097 -12.88283 -12.85032 -12.43265 -12.23292 -12.11048 -11.94945 -11.93632 -11.87118 -11.71327 -11.62036 -11.39674 -10.93080 -10.47398 -10.21231 -10.07247 -9.99917 -8.14737 -6.25942 0.23663 1.03040 1.31413 1.37204 1.38368 1.48538 1.87695 2.05658 2.40289 3.12675 3.20376 3.41437 3.56127 3.73611 3.79436 3.88658 4.11926 4.20379 4.29819 4.34851 4.37857 4.44856 4.46222 4.62276 4.65754 4.72306 4.81894 4.88870 4.95581 5.01331 5.04591 5.15029 5.16865 5.22204 5.33556 5.37535 5.54000 5.63040 5.72960 5.82985 6.33647 6.62291 6.77889 6.93686 7.41699 8.93801 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019035 B = 0.004025 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.632236 B = 6954.863904 C = 7501.005308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.283 1.283 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.500 4.500 8 H 0.049 0.951 9 C -0.001 4.001 10 C 0.125 3.875 11 O -0.334 6.334 12 C 0.541 3.459 13 O -0.537 6.537 14 C -0.034 4.034 15 C -0.191 4.191 16 C 0.027 3.973 17 N -0.272 5.272 18 N -0.262 5.262 19 C 0.102 3.898 20 C -0.127 4.127 21 C -0.125 4.125 22 C -0.050 4.050 23 C -0.181 4.181 24 C -0.136 4.136 25 H 0.261 0.739 26 H 0.041 0.959 27 H 0.058 0.942 28 H 0.174 0.826 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.628 -11.245 -17.097 25.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.209 1.209 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.537 4.537 8 H 0.067 0.933 9 C -0.001 4.001 10 C 0.051 3.949 11 O -0.248 6.248 12 C 0.385 3.615 13 O -0.427 6.427 14 C -0.190 4.190 15 C -0.219 4.219 16 C -0.097 4.097 17 N -0.064 5.064 18 N -0.100 5.100 19 C -0.015 4.015 20 C -0.165 4.165 21 C -0.163 4.163 22 C -0.089 4.089 23 C -0.218 4.218 24 C -0.174 4.174 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.076 0.924 28 H 0.191 0.809 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.124 0.876 36 H 0.126 0.874 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 15.949 -10.777 -16.185 25.149 hybrid contribution -0.981 1.042 -0.111 1.436 sum 14.968 -9.735 -16.295 24.173 Atomic orbital electron populations 1.70083 1.06900 1.27533 1.50177 1.25693 0.95712 1.01981 0.94324 0.85682 0.79101 0.79749 0.77968 1.20893 1.20263 1.18958 1.20587 0.92230 0.89951 1.50970 0.93266 1.18871 1.01233 0.94584 0.85417 1.22618 0.83570 0.98254 0.90437 1.86673 1.39582 1.78306 1.20284 1.20220 0.87372 0.72513 0.81409 1.90749 1.25199 1.50540 1.76216 1.20818 0.89461 1.13053 0.95653 1.21531 0.98599 1.08484 0.93239 1.21989 0.89620 1.03713 0.94356 1.46431 1.09063 1.43944 1.06951 1.73628 1.02596 1.18081 1.15659 1.22741 0.70578 1.04540 1.03688 1.21998 1.03002 0.99624 0.91885 1.21751 0.93335 1.02354 0.98825 1.20631 0.97183 1.03114 0.87933 1.23052 0.98739 0.96148 1.03865 1.22443 0.92418 1.01363 1.01171 0.92974 0.94047 0.92427 0.80855 0.87739 0.87583 0.90118 0.85576 0.87051 0.91352 0.87596 0.87430 0.89043 0.89771 0.90975 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.28 12.72 21.45 0.27 -54.01 16 2 C 0.02 1.32 5.43 84.65 0.46 1.78 16 3 Si 0.95 45.95 29.54 68.60 2.03 47.98 16 4 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.50 -29.33 8.62 25.60 0.22 -29.11 16 8 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 9 C 0.00 -0.03 1.71 -52.93 -0.09 -0.12 16 10 C 0.12 6.53 5.43 71.98 0.39 6.92 16 11 O -0.33 -17.32 10.01 -56.42 -0.56 -17.89 16 12 C 0.54 25.64 7.96 70.29 0.56 26.19 16 13 O -0.54 -26.71 16.64 19.88 0.33 -26.38 16 14 C -0.03 -1.36 7.17 42.45 0.30 -1.05 16 15 C -0.19 -5.80 10.75 22.30 0.24 -5.56 16 16 C 0.03 0.62 6.57 41.21 0.27 0.89 16 17 N -0.27 -7.07 3.74 -333.32 -1.25 -8.31 16 18 N -0.26 -9.73 12.04 -48.10 -0.58 -10.31 16 19 C 0.10 1.51 7.17 86.34 0.62 2.13 16 20 C -0.13 -0.81 5.91 30.70 0.18 -0.63 16 21 C -0.13 -0.76 5.98 30.80 0.18 -0.57 16 22 C -0.05 -0.54 6.28 30.03 0.19 -0.35 16 23 C -0.18 -8.17 9.94 30.62 0.30 -7.87 16 24 C -0.14 -6.63 9.26 30.62 0.28 -6.34 16 25 H 0.26 14.87 8.32 -92.71 -0.77 14.10 16 26 H 0.04 2.39 7.98 -2.39 -0.02 2.37 16 27 H 0.06 2.73 8.10 -2.39 -0.02 2.71 16 28 H 0.17 4.64 8.06 -2.91 -0.02 4.62 16 29 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 0.54 8.11 -2.39 -0.02 0.52 16 32 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 34 H 0.07 0.51 8.12 -2.39 -0.02 0.49 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 38 H 0.08 3.71 8.14 -2.39 -0.02 3.69 16 39 H 0.07 3.72 8.14 -2.39 -0.02 3.71 16 40 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 Total: -1.00 -77.91 342.12 5.39 -72.52 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.03 Total: 10.08 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 4.12 Total: -13.69 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -1.55 Total: -72.63 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -0.23 Total: -44.26 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -77.91 5.39 -72.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835189065.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.773 kcal (2) G-P(sol) polarization free energy of solvation -77.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds