Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99548 * 2 1 4 4 O 1.42905 * 109.46944 * 135.00211 * 3 2 1 5 5 C 1.35897 * 116.99869 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05227 * 180.02562 * 5 4 3 7 7 C 1.38141 * 119.94391 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05384 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94399 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 89.99908 * 9 8 7 11 11 O 1.20826 * 119.99939 * 0.02562 * 10 9 8 12 12 O 1.34230 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.45192 * 117.00018 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47109 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47152 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00115 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99722 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47232 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46783 * 120.00261 * 19 17 15 22 22 H 1.48497 * 109.47298 * 239.99997 * 19 17 15 23 23 C 1.38270 * 120.11265 * 0.25255 * 8 7 6 24 24 C 1.38141 * 120.05541 * 359.45293 * 23 8 7 25 25 H 1.07991 * 120.00481 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99551 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00455 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47035 * 15.00861 * 3 2 1 29 29 H 1.08994 * 109.47386 * 255.00248 * 3 2 1 30 30 H 1.07996 * 120.02821 * 359.97438 * 6 5 4 31 31 H 1.07993 * 119.97516 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47152 * 330.00001 * 9 8 7 33 33 H 1.09001 * 109.46980 * 210.00101 * 9 8 7 34 34 H 1.09001 * 109.47630 * 300.00318 * 13 12 10 35 35 H 1.08998 * 109.47321 * 60.00129 * 13 12 10 36 36 H 1.09005 * 109.47066 * 299.99718 * 14 13 12 37 37 H 1.08998 * 109.47698 * 59.99951 * 14 13 12 38 38 H 0.97000 * 119.99888 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.97019 * 179.70188 * 23 8 7 40 40 H 1.07998 * 120.03323 * 180.24999 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9090 2.3454 1.0790 6 6 4.9598 2.3525 1.9848 7 6 5.7532 3.4761 2.1117 8 6 5.5005 4.5934 1.3373 9 6 6.3673 5.8181 1.4782 10 6 7.5264 5.7261 0.5195 11 8 7.6370 4.7650 -0.2042 12 8 8.4354 6.7125 0.4690 13 6 9.5246 6.5571 -0.4784 14 6 10.4525 7.7706 -0.3922 15 6 11.5828 7.6096 -1.3759 16 1 11.6343 6.7297 -1.9999 17 6 12.5510 8.5858 -1.4794 18 7 12.4879 9.6576 -0.7199 19 14 13.9523 8.3859 -2.6983 20 1 13.7945 7.1022 -3.4279 21 1 13.9300 9.5114 -3.6669 22 1 15.2461 8.3858 -1.9694 23 6 4.4502 4.5909 0.4380 24 6 3.6576 3.4676 0.3029 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2661 29 1 2.4754 1.4869 -0.9926 30 1 5.1569 1.4805 2.5907 31 1 6.5716 3.4820 2.8163 32 1 6.7442 5.8810 2.4991 33 1 5.7789 6.7075 1.2527 34 1 10.0861 5.6533 -0.2417 35 1 9.1202 6.4796 -1.4876 36 1 9.8914 8.6746 -0.6288 37 1 10.8570 7.8478 0.6170 38 1 13.1689 10.3446 -0.7929 39 1 4.2519 5.4665 -0.1623 40 1 2.8399 3.4646 -0.4026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835265029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -92.271151 kcal Electronic energy + Delta-G solvation = -21241.179829 eV Core-core repulsion = 17793.615508 eV Total energy + Delta-G solvation = -3447.564322 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52335 -39.81563 -37.96660 -36.01318 -34.55230 -33.34767 -32.29874 -31.19982 -30.26259 -27.91111 -26.59034 -24.88311 -22.99321 -22.14136 -20.95374 -20.40525 -20.20223 -18.44076 -17.35220 -16.77404 -16.27765 -16.14387 -16.04802 -15.82580 -15.20331 -14.85730 -14.52446 -14.45949 -13.86047 -13.69044 -13.32490 -13.00692 -12.90316 -12.48746 -12.37877 -12.05542 -11.80377 -11.59072 -11.33631 -11.20268 -11.01771 -10.97294 -10.75072 -10.67340 -10.17687 -9.98142 -9.62753 -9.61014 -9.27988 -9.12932 -8.44680 -8.27019 -6.10584 -4.14714 1.19765 1.23383 1.59145 2.62611 3.04123 3.18824 3.27412 3.34992 3.40279 3.75888 4.34594 4.39912 4.54005 4.58598 4.64233 4.69779 4.85904 4.94945 5.09566 5.19838 5.26053 5.29317 5.34846 5.42102 5.49307 5.56874 5.87392 6.02799 6.06496 6.10669 6.10970 6.13554 6.18458 6.46142 6.58892 6.65284 7.04063 7.18687 7.57009 7.62804 7.87352 8.20986 8.30094 8.91126 9.49694 11.00934 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.002179 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.185797 B =12847.648467 C =13183.748341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.155 4.155 3 C 0.086 3.914 4 O -0.313 6.313 5 C 0.128 3.872 6 C -0.150 4.150 7 C -0.062 4.062 8 C -0.107 4.107 9 C -0.073 4.073 10 C 0.453 3.547 11 O -0.511 6.511 12 O -0.359 6.359 13 C 0.076 3.924 14 C 0.024 3.976 15 C -0.526 4.526 16 H 0.060 0.940 17 C 0.060 3.940 18 N -0.890 5.890 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.062 4.062 24 C -0.208 4.208 25 H 0.100 0.900 26 H 0.108 0.892 27 H 0.120 0.880 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.131 0.869 31 H 0.130 0.870 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.028 0.972 37 H 0.028 0.972 38 H 0.263 0.737 39 H 0.126 0.874 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.348 -14.308 5.388 27.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C 0.011 3.989 4 O -0.227 6.227 5 C 0.083 3.917 6 C -0.168 4.168 7 C -0.080 4.080 8 C -0.107 4.107 9 C -0.110 4.110 10 C 0.296 3.704 11 O -0.400 6.400 12 O -0.275 6.275 13 C 0.003 3.997 14 C -0.014 4.014 15 C -0.564 4.564 16 H 0.078 0.922 17 C -0.142 4.142 18 N -0.528 5.528 19 Si 0.727 3.273 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.080 4.080 24 C -0.226 4.226 25 H 0.118 0.882 26 H 0.126 0.874 27 H 0.138 0.862 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.149 0.851 31 H 0.148 0.852 32 H 0.131 0.869 33 H 0.130 0.870 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.046 0.954 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.144 0.856 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -23.172 -14.593 5.283 27.889 hybrid contribution 0.795 0.029 -1.006 1.283 sum -22.377 -14.564 4.277 27.039 Atomic orbital electron populations 1.23888 0.95407 1.02593 0.99092 1.22687 0.95662 0.97849 1.01080 1.21828 0.87908 0.96760 0.92414 1.86069 1.42178 1.35903 1.58560 1.18982 0.91503 0.85832 0.95415 1.20358 0.95834 0.99810 1.00834 1.20840 0.97630 0.91496 0.98068 1.19247 0.97061 0.95396 0.99005 1.20248 0.92849 0.97995 0.99920 1.23459 0.83435 0.80884 0.82662 1.90648 1.75185 1.32707 1.41427 1.86519 1.35946 1.45403 1.59666 1.23616 0.84382 1.02297 0.89394 1.19180 0.92461 0.91214 0.98498 1.21031 1.08349 1.05793 1.21230 0.92221 1.24988 0.98117 0.95034 0.96061 1.69985 1.34905 1.08911 1.39027 0.86417 0.81787 0.78227 0.80896 1.19604 1.20839 1.20822 1.20804 0.93638 0.97668 0.95903 1.21152 1.03789 0.94182 1.03526 0.88217 0.87420 0.86212 0.91440 0.90903 0.85126 0.85171 0.86945 0.87028 0.92384 0.92411 0.95351 0.95331 0.92779 0.85647 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.91 14.31 29.01 0.42 -0.49 16 2 C -0.15 -1.05 9.89 -36.03 -0.36 -1.40 16 3 C 0.09 0.68 5.15 36.01 0.19 0.86 16 4 O -0.31 -3.42 10.12 -19.42 -0.20 -3.61 16 5 C 0.13 1.48 6.69 -39.21 -0.26 1.22 16 6 C -0.15 -1.72 9.99 -39.43 -0.39 -2.11 16 7 C -0.06 -0.72 9.69 -39.61 -0.38 -1.11 16 8 C -0.11 -1.30 4.38 -104.60 -0.46 -1.76 16 9 C -0.07 -0.86 5.94 -29.03 -0.17 -1.04 16 10 C 0.45 7.82 7.95 36.01 0.29 8.10 16 11 O -0.51 -10.29 15.78 -18.75 -0.30 -10.59 16 12 O -0.36 -7.15 10.22 -39.26 -0.40 -7.55 16 13 C 0.08 1.71 5.40 37.16 0.20 1.91 16 14 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 19 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C -0.06 -0.71 9.69 -39.60 -0.38 -1.10 16 24 C -0.21 -2.26 9.04 -39.43 -0.36 -2.61 16 25 H 0.10 0.44 7.90 -52.49 -0.41 0.02 16 26 H 0.11 0.42 8.06 -52.48 -0.42 0.00 16 27 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 28 H 0.07 0.45 7.38 -51.93 -0.38 0.07 16 29 H 0.07 0.53 7.67 -51.93 -0.40 0.14 16 30 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.11 1.09 8.08 -51.93 -0.42 0.67 16 33 H 0.11 1.08 8.08 -51.93 -0.42 0.66 16 34 H 0.06 1.30 8.13 -51.93 -0.42 0.88 16 35 H 0.06 1.30 8.13 -51.93 -0.42 0.87 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.13 1.07 6.30 -52.49 -0.33 0.74 16 LS Contribution 352.61 15.07 5.31 5.31 Total: -1.00 -33.11 352.61 -7.82 -40.92 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: -5.71 Total: -2.64 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -2.24 Total: -12.66 kcal Atomic # 7 Polarization: -26.40 SS G_CDS: 0.74 Total: -25.67 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.89 Total: -21.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.11 -7.82 -40.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.347 kcal (2) G-P(sol) polarization free energy of solvation -33.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds