Wall clock time and date at job start Tue Mar 31 2020 06:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99548 * 2 1 4 4 O 1.42905 * 109.46944 * 135.00211 * 3 2 1 5 5 C 1.35897 * 116.99869 * 180.02562 * 4 3 2 6 6 C 1.38738 * 120.05227 * 180.02562 * 5 4 3 7 7 C 1.38141 * 119.94391 * 180.02562 * 6 5 4 8 8 C 1.38267 * 120.05384 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.94399 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47064 * 89.99908 * 9 8 7 11 11 O 1.20826 * 119.99939 * 0.02562 * 10 9 8 12 12 O 1.34230 * 120.00046 * 179.97438 * 10 9 8 13 13 C 1.45192 * 117.00018 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47109 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47152 * 180.02562 * 14 13 12 16 16 H 1.07999 * 119.99969 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00115 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99722 * 359.97438 * 17 15 14 19 19 Si 1.86794 * 120.00027 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47232 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46783 * 120.00261 * 19 17 15 22 22 H 1.48497 * 109.47298 * 239.99997 * 19 17 15 23 23 C 1.38270 * 120.11265 * 0.25255 * 8 7 6 24 24 C 1.38141 * 120.05541 * 359.45293 * 23 8 7 25 25 H 1.07991 * 120.00481 * 359.97438 * 1 2 3 26 26 H 1.08004 * 119.99551 * 179.97438 * 1 2 3 27 27 H 1.08001 * 120.00455 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47035 * 15.00861 * 3 2 1 29 29 H 1.08994 * 109.47386 * 255.00248 * 3 2 1 30 30 H 1.07996 * 120.02821 * 359.97438 * 6 5 4 31 31 H 1.07993 * 119.97516 * 180.02562 * 7 6 5 32 32 H 1.09002 * 109.47152 * 330.00001 * 9 8 7 33 33 H 1.09001 * 109.46980 * 210.00101 * 9 8 7 34 34 H 1.09001 * 109.47630 * 300.00318 * 13 12 10 35 35 H 1.08998 * 109.47321 * 60.00129 * 13 12 10 36 36 H 1.09005 * 109.47066 * 299.99718 * 14 13 12 37 37 H 1.08998 * 109.47698 * 59.99951 * 14 13 12 38 38 H 0.97000 * 119.99888 * 180.02562 * 18 17 15 39 39 H 1.07999 * 119.97019 * 179.70188 * 23 8 7 40 40 H 1.07998 * 120.03323 * 180.24999 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 6 3.9090 2.3454 1.0790 6 6 4.9598 2.3525 1.9848 7 6 5.7532 3.4761 2.1117 8 6 5.5005 4.5934 1.3373 9 6 6.3673 5.8181 1.4782 10 6 7.5264 5.7261 0.5195 11 8 7.6370 4.7650 -0.2042 12 8 8.4354 6.7125 0.4690 13 6 9.5246 6.5571 -0.4784 14 6 10.4525 7.7706 -0.3922 15 6 11.5828 7.6096 -1.3759 16 1 11.6343 6.7297 -1.9999 17 6 12.5510 8.5858 -1.4794 18 7 12.4879 9.6576 -0.7199 19 14 13.9523 8.3859 -2.6983 20 1 13.7945 7.1022 -3.4279 21 1 13.9300 9.5114 -3.6669 22 1 15.2461 8.3858 -1.9694 23 6 4.4502 4.5909 0.4380 24 6 3.6576 3.4676 0.3029 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0004 27 1 1.8501 -0.9353 -0.0004 28 1 1.3854 2.1161 0.2661 29 1 2.4754 1.4869 -0.9926 30 1 5.1569 1.4805 2.5907 31 1 6.5716 3.4820 2.8163 32 1 6.7442 5.8810 2.4991 33 1 5.7789 6.7075 1.2527 34 1 10.0861 5.6533 -0.2417 35 1 9.1202 6.4796 -1.4876 36 1 9.8914 8.6746 -0.6288 37 1 10.8570 7.8478 0.6170 38 1 13.1689 10.3446 -0.7929 39 1 4.2519 5.4665 -0.1623 40 1 2.8399 3.4646 -0.4026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835265029.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:48 Heat of formation + Delta-G solvation = -109.833212 kcal Electronic energy + Delta-G solvation = -21241.941377 eV Core-core repulsion = 17793.615508 eV Total energy + Delta-G solvation = -3448.325870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.60658 -40.98068 -38.85652 -37.54377 -35.44500 -35.10358 -33.29807 -32.22440 -32.02052 -28.83761 -27.44982 -26.71822 -23.82427 -23.46151 -22.63146 -21.50882 -20.86858 -19.21620 -18.97788 -18.12451 -17.73119 -17.38632 -17.23950 -16.83322 -16.48189 -16.18563 -15.61886 -15.32540 -15.09254 -14.44810 -14.42729 -14.38398 -14.27719 -13.71701 -13.41105 -13.25473 -12.98931 -12.90267 -12.71223 -12.57513 -12.52134 -12.13811 -12.10178 -11.83532 -11.72177 -11.50263 -11.45592 -11.29240 -10.61973 -10.45960 -9.97203 -9.13098 -8.27567 -6.40580 0.31247 0.38131 1.11725 1.25398 1.40765 1.41109 1.54743 1.86300 2.37220 2.40073 2.81161 3.06709 3.63395 3.74365 3.89483 3.93611 3.99786 4.05637 4.20377 4.23483 4.28862 4.30541 4.37950 4.48404 4.57990 4.66220 4.70782 4.73659 4.95244 5.05548 5.21828 5.30080 5.33266 5.47197 5.58225 5.59050 5.59683 5.63571 5.75690 5.80651 6.06700 6.41022 6.72287 6.81584 7.29144 8.85086 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.037365 B = 0.002179 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.185797 B =12847.648467 C =13183.748341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.179 4.179 3 C 0.080 3.920 4 O -0.327 6.327 5 C 0.118 3.882 6 C -0.164 4.164 7 C -0.070 4.070 8 C -0.125 4.125 9 C -0.061 4.061 10 C 0.452 3.548 11 O -0.542 6.542 12 O -0.366 6.366 13 C 0.091 3.909 14 C 0.030 3.970 15 C -0.551 4.551 16 H 0.063 0.937 17 C 0.006 3.994 18 N -0.925 5.925 19 Si 0.973 3.027 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.275 1.275 23 C -0.071 4.071 24 C -0.212 4.212 25 H 0.110 0.890 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.008 0.992 37 H 0.008 0.992 38 H 0.268 0.732 39 H 0.140 0.860 40 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.291 -14.806 5.030 28.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C 0.006 3.994 4 O -0.242 6.242 5 C 0.073 3.927 6 C -0.183 4.183 7 C -0.088 4.088 8 C -0.125 4.125 9 C -0.098 4.098 10 C 0.297 3.703 11 O -0.432 6.432 12 O -0.282 6.282 13 C 0.018 3.982 14 C -0.008 4.008 15 C -0.589 4.589 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.564 5.564 19 Si 0.797 3.203 20 H -0.188 1.188 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.089 4.089 24 C -0.231 4.231 25 H 0.128 0.872 26 H 0.140 0.860 27 H 0.134 0.866 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.158 0.842 31 H 0.161 0.839 32 H 0.157 0.843 33 H 0.157 0.843 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.077 0.923 39 H 0.158 0.842 40 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -24.141 -15.101 4.935 28.900 hybrid contribution 0.944 0.123 -0.859 1.282 sum -23.197 -14.978 4.076 27.912 Atomic orbital electron populations 1.24125 0.94880 1.03824 0.96551 1.22688 0.96259 0.97292 1.03425 1.22041 0.87486 0.97926 0.91954 1.86058 1.42837 1.35829 1.59430 1.19196 0.91673 0.86306 0.95512 1.20592 0.96103 1.00297 1.01273 1.21078 0.97974 0.91415 0.98339 1.19381 0.97600 0.95702 0.99818 1.20391 0.90718 0.99144 0.99543 1.24554 0.83474 0.79486 0.82769 1.90636 1.75850 1.33710 1.42989 1.86517 1.35925 1.46818 1.58988 1.23099 0.84891 1.00167 0.90055 1.18994 0.92777 0.92060 0.96933 1.21411 1.09355 1.06219 1.21887 0.91896 1.25954 1.00873 0.94504 0.97933 1.70097 1.36075 1.09743 1.40518 0.85277 0.78119 0.78561 0.78346 1.18795 1.19988 1.19992 1.21088 0.93570 0.98434 0.95830 1.21406 1.04275 0.93731 1.03674 0.87162 0.85986 0.86563 0.90168 0.90690 0.84203 0.83863 0.84314 0.84330 0.92529 0.92508 0.97368 0.97373 0.92320 0.84206 0.83513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 14.31 67.78 0.97 -0.38 16 2 C -0.18 -2.24 9.89 25.64 0.25 -1.99 16 3 C 0.08 1.18 5.15 71.24 0.37 1.55 16 4 O -0.33 -6.97 10.12 -92.39 -0.93 -7.90 16 5 C 0.12 2.67 6.69 22.51 0.15 2.82 16 6 C -0.16 -3.68 9.99 22.37 0.22 -3.45 16 7 C -0.07 -1.56 9.69 22.25 0.22 -1.34 16 8 C -0.12 -2.85 4.38 -19.85 -0.09 -2.94 16 9 C -0.06 -1.33 5.94 29.10 0.17 -1.15 16 10 C 0.45 15.18 7.95 71.24 0.57 15.75 16 11 O -0.54 -21.61 15.78 21.97 0.35 -21.26 16 12 O -0.37 -14.47 10.22 -51.41 -0.53 -14.99 16 13 C 0.09 4.16 5.40 71.98 0.39 4.54 16 14 C 0.03 1.60 5.35 29.85 0.16 1.76 16 15 C -0.55 -31.54 9.11 25.60 0.23 -31.30 16 16 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 17 C 0.01 0.37 5.46 84.66 0.46 0.83 16 18 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 19 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 20 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 C -0.07 -1.53 9.69 22.25 0.22 -1.32 16 24 C -0.21 -4.34 9.04 22.37 0.20 -4.14 16 25 H 0.11 0.71 7.90 -2.92 -0.02 0.68 16 26 H 0.12 0.69 8.06 -2.91 -0.02 0.66 16 27 H 0.12 1.48 8.06 -2.91 -0.02 1.46 16 28 H 0.08 0.94 7.38 -2.39 -0.02 0.92 16 29 H 0.08 1.04 7.67 -2.39 -0.02 1.02 16 30 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.14 2.64 8.06 -2.91 -0.02 2.62 16 32 H 0.14 2.31 8.08 -2.39 -0.02 2.29 16 33 H 0.14 2.29 8.08 -2.39 -0.02 2.27 16 34 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 35 H 0.06 2.57 8.13 -2.39 -0.02 2.55 16 36 H 0.01 0.45 8.14 -2.38 -0.02 0.43 16 37 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 38 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 39 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 40 H 0.15 2.25 6.30 -2.91 -0.02 2.23 16 Total: -1.00 -71.27 352.61 6.71 -64.56 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.02 Total: 9.58 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.49 Total: -20.77 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: 0.28 Total: -55.08 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -1.11 Total: -44.16 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -71.27 6.71 -64.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835265029.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.276 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds