Wall clock time and date at job start Tue Mar 31 2020 06:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46810 * 2 1 4 4 H 1.09004 * 109.47462 * 304.99902 * 3 2 1 5 5 C 1.50706 * 109.46830 * 185.00313 * 3 2 1 6 6 H 1.07998 * 119.99501 * 240.00068 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.99971 * 5 3 2 8 8 N 1.31514 * 120.00481 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99886 * 359.72901 * 7 5 3 10 10 H 1.48502 * 109.46964 * 270.27509 * 9 7 5 11 11 H 1.48505 * 109.47036 * 30.26897 * 9 7 5 12 12 H 1.48490 * 109.47395 * 150.27411 * 9 7 5 13 13 O 1.45200 * 109.47309 * 65.00336 * 3 2 1 14 14 C 1.34231 * 116.99851 * 270.00157 * 13 3 2 15 15 O 1.20823 * 120.00032 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99755 * 180.02562 * 14 13 3 17 17 H 1.09008 * 110.66598 * 306.75459 * 16 14 13 18 18 C 1.54703 * 110.75316 * 70.17622 * 16 14 13 19 19 C 1.51648 * 101.92655 * 143.60398 * 18 16 14 20 20 C 1.37746 * 132.16644 * 164.11337 * 19 18 16 21 21 C 1.38343 * 119.97725 * 180.95990 * 20 19 18 22 22 C 1.38288 * 119.76742 * 0.02562 * 21 20 19 23 23 C 1.37928 * 120.35150 * 359.81351 * 22 21 20 24 24 C 1.50702 * 119.88208 * 179.97438 * 23 22 21 25 25 C 1.38883 * 107.04347 * 344.62680 * 19 18 16 26 26 O 1.36129 * 111.23091 * 358.91560 * 25 19 18 27 27 H 1.09006 * 109.46783 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47340 * 299.99368 * 1 2 3 29 29 H 1.08998 * 109.47609 * 60.00099 * 1 2 3 30 30 H 1.09009 * 109.47137 * 240.00650 * 2 1 3 31 31 H 1.08993 * 109.47672 * 120.00373 * 2 1 3 32 32 H 0.96999 * 120.00235 * 179.72806 * 8 7 5 33 33 H 1.08998 * 110.93765 * 261.75838 * 18 16 14 34 34 H 1.08995 * 110.94155 * 25.44162 * 18 16 14 35 35 H 1.08007 * 120.01065 * 0.93650 * 20 19 18 36 36 H 1.08001 * 120.11670 * 180.02562 * 21 20 19 37 37 H 1.07994 * 119.82500 * 179.83138 * 22 21 20 38 38 H 1.08994 * 109.47437 * 269.99564 * 24 23 22 39 39 H 1.09001 * 109.46427 * 29.99828 * 24 23 22 40 40 H 1.09000 * 109.47320 * 149.99225 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 5.4539 0.8805 -1.3364 9 14 3.0966 0.1028 -2.5668 10 1 2.8758 -1.3319 -2.2536 11 1 1.7878 0.8008 -2.6388 12 1 3.7941 0.2227 -3.8723 13 8 1.6558 2.0917 1.2407 14 6 0.4726 2.7254 1.2560 15 8 -0.2190 2.7376 0.2654 16 6 0.0075 3.4225 2.5084 17 1 0.0359 2.7428 3.3602 18 6 0.8584 4.6853 2.7812 19 6 -0.1743 5.6442 3.3413 20 6 -0.0565 6.8247 4.0413 21 6 -1.1912 7.4990 4.4554 22 6 -2.4409 6.9832 4.1645 23 6 -2.5613 5.8031 3.4609 24 6 -3.9284 5.2503 3.1501 25 6 -1.4239 5.1206 3.0357 26 8 -1.3137 3.9613 2.3308 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.8771 0.4789 -2.1113 33 1 1.6371 4.4792 3.5154 34 1 1.2886 5.0722 1.8574 35 1 0.9216 7.2235 4.2670 36 1 -1.1014 8.4249 5.0041 37 1 -3.3273 7.5074 4.4898 38 1 -4.2453 4.5898 3.9571 39 1 -4.6386 6.0714 3.0524 40 1 -3.8901 4.6900 2.2159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:05 Heat of formation + Delta-G solvation = -90.726677 kcal Electronic energy + Delta-G solvation = -23169.704371 eV Core-core repulsion = 19722.207023 eV Total energy + Delta-G solvation = -3447.497348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48770 -39.74693 -37.69860 -36.00921 -33.88836 -33.54200 -32.00051 -31.22916 -29.94538 -27.85959 -26.92550 -24.80271 -22.87775 -22.30693 -21.36779 -20.93123 -19.86082 -17.88440 -17.43393 -16.91532 -16.56111 -16.35533 -15.62900 -15.46800 -14.84758 -14.12016 -14.06600 -13.72191 -13.58104 -13.22345 -13.19568 -13.03250 -12.67221 -12.46586 -12.38600 -12.11304 -11.98510 -11.68537 -11.61078 -11.53880 -11.30536 -11.18041 -10.92246 -10.79866 -10.11394 -9.96285 -9.69213 -9.54820 -9.15712 -8.84153 -8.71108 -8.21758 -6.28473 -4.31619 1.12248 1.21129 2.49277 2.65972 3.14802 3.27755 3.30113 3.45053 3.70462 4.21549 4.30442 4.45308 4.66891 4.78648 4.90918 5.00782 5.05999 5.10903 5.24084 5.31714 5.46738 5.52637 5.62411 5.65734 5.76388 5.78766 5.86064 5.92829 6.06340 6.21063 6.24818 6.34392 6.36013 6.45019 6.52011 6.60413 6.67667 6.96864 7.03643 7.26514 7.42696 8.12605 8.46881 8.77587 9.27975 10.83271 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.003927 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.802646 B = 7129.237390 C = 7780.128169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.198 3.802 4 H 0.048 0.952 5 C -0.527 4.527 6 H 0.088 0.912 7 C 0.082 3.918 8 N -0.886 5.886 9 Si 0.876 3.124 10 H -0.272 1.272 11 H -0.260 1.260 12 H -0.289 1.289 13 O -0.333 6.333 14 C 0.457 3.543 15 O -0.492 6.492 16 C 0.090 3.910 17 H 0.122 0.878 18 C -0.095 4.095 19 C -0.166 4.166 20 C -0.073 4.073 21 C -0.146 4.146 22 C -0.090 4.090 23 C -0.102 4.102 24 C -0.110 4.110 25 C 0.106 3.894 26 O -0.275 6.275 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.270 0.730 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 9.458 11.903 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.145 3.855 4 H 0.066 0.934 5 C -0.565 4.565 6 H 0.106 0.894 7 C -0.122 4.122 8 N -0.523 5.523 9 Si 0.704 3.296 10 H -0.198 1.198 11 H -0.185 1.185 12 H -0.216 1.216 13 O -0.249 6.249 14 C 0.297 3.703 15 O -0.380 6.380 16 C 0.033 3.967 17 H 0.140 0.860 18 C -0.132 4.132 19 C -0.167 4.167 20 C -0.091 4.091 21 C -0.164 4.164 22 C -0.108 4.108 23 C -0.102 4.102 24 C -0.167 4.167 25 C 0.061 3.939 26 O -0.188 6.188 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.145 0.855 36 H 0.146 0.854 37 H 0.148 0.852 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.248 9.245 11.304 20.402 hybrid contribution -0.244 -0.573 -0.866 1.067 sum -14.492 8.672 10.438 19.854 Atomic orbital electron populations 1.21908 0.96892 1.00179 1.01818 1.22381 0.94412 0.99455 1.02403 1.21063 0.96459 0.88111 0.79881 0.93437 1.20759 0.87488 1.40270 1.07957 0.89365 1.24714 0.94953 0.95211 0.97310 1.69825 1.08471 1.44028 1.29926 0.87015 0.81024 0.80223 0.81299 1.19825 1.18497 1.21587 1.86478 1.33284 1.62189 1.42980 1.22621 0.81424 0.77586 0.88652 1.90658 1.55159 1.57218 1.34963 1.22662 0.81614 0.96721 0.95711 0.86033 1.21694 0.97245 0.90923 1.03350 1.20779 0.94048 0.98272 1.03559 1.20305 0.99245 0.93050 0.96523 1.21004 0.92018 1.00663 1.02709 1.20763 0.97972 0.94422 0.97625 1.19112 0.93394 0.96427 1.01297 1.20699 0.92462 1.01038 1.02514 1.19410 0.94270 0.87319 0.92908 1.86896 1.31211 1.35353 1.65367 0.93756 0.93636 0.92499 0.91627 0.91054 0.91964 0.87269 0.88153 0.85514 0.85440 0.85227 0.91278 0.91546 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.57 37.16 0.32 -2.66 16 2 C -0.15 -3.33 5.14 -26.73 -0.14 -3.46 16 3 C 0.20 4.88 1.84 -27.88 -0.05 4.82 16 4 H 0.05 1.25 6.23 -51.93 -0.32 0.92 16 5 C -0.53 -14.74 9.48 -34.44 -0.33 -15.07 16 6 H 0.09 2.64 8.06 -52.49 -0.42 2.22 16 7 C 0.08 2.31 5.45 -17.82 -0.10 2.21 16 8 N -0.89 -26.20 13.96 55.43 0.77 -25.43 16 9 Si 0.88 21.34 24.41 -169.99 -4.15 17.19 16 10 H -0.27 -6.34 6.82 56.52 0.39 -5.96 16 11 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 12 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 13 O -0.33 -7.31 9.81 -39.26 -0.39 -7.69 16 14 C 0.46 9.02 5.71 36.00 0.21 9.22 16 15 O -0.49 -11.05 13.72 -25.24 -0.35 -11.39 16 16 C 0.09 1.39 4.16 -26.99 -0.11 1.28 16 17 H 0.12 1.54 8.14 -51.92 -0.42 1.12 16 18 C -0.10 -1.28 6.64 -26.52 -0.18 -1.45 16 19 C -0.17 -2.15 6.27 -104.10 -0.65 -2.80 16 20 C -0.07 -0.78 10.03 -39.72 -0.40 -1.18 16 21 C -0.15 -1.36 10.07 -39.52 -0.40 -1.76 16 22 C -0.09 -0.87 9.66 -39.68 -0.38 -1.25 16 23 C -0.10 -1.21 5.90 -104.34 -0.62 -1.82 16 24 C -0.11 -1.10 9.98 36.01 0.36 -0.75 16 25 C 0.11 1.51 6.73 -38.95 -0.26 1.24 16 26 O -0.27 -4.50 10.26 -39.24 -0.40 -4.90 16 27 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.04 0.87 6.06 -51.93 -0.31 0.56 16 29 H 0.06 1.17 7.80 -51.93 -0.40 0.77 16 30 H 0.07 1.51 3.19 -51.92 -0.17 1.35 16 31 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 33 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.10 1.45 7.92 -51.93 -0.41 1.04 16 35 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 40 H 0.07 0.81 8.00 -51.93 -0.42 0.40 16 LS Contribution 326.77 15.07 4.92 4.92 Total: -1.00 -31.84 326.77 -7.76 -39.59 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -5.44 Total: 1.11 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -2.73 Total: -13.40 kcal Atomic # 7 Polarization: -26.20 SS G_CDS: 0.77 Total: -25.43 kcal Atomic # 8 Polarization: -22.86 SS G_CDS: -1.13 Total: -23.99 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.15 Total: 17.19 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.84 -7.76 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.134 kcal (2) G-P(sol) polarization free energy of solvation -31.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds