Wall clock time and date at job start Tue Mar 31 2020 06:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46810 * 2 1 4 4 H 1.09004 * 109.47462 * 304.99902 * 3 2 1 5 5 C 1.50706 * 109.46830 * 185.00313 * 3 2 1 6 6 H 1.07998 * 119.99501 * 240.00068 * 5 3 2 7 7 C 1.37871 * 120.00436 * 59.99971 * 5 3 2 8 8 N 1.31514 * 120.00481 * 179.97438 * 7 5 3 9 9 Si 1.86803 * 119.99886 * 359.72901 * 7 5 3 10 10 H 1.48502 * 109.46964 * 270.27509 * 9 7 5 11 11 H 1.48505 * 109.47036 * 30.26897 * 9 7 5 12 12 H 1.48490 * 109.47395 * 150.27411 * 9 7 5 13 13 O 1.45200 * 109.47309 * 65.00336 * 3 2 1 14 14 C 1.34231 * 116.99851 * 270.00157 * 13 3 2 15 15 O 1.20823 * 120.00032 * 359.97438 * 14 13 3 16 16 C 1.50693 * 119.99755 * 180.02562 * 14 13 3 17 17 H 1.09008 * 110.66598 * 306.75459 * 16 14 13 18 18 C 1.54703 * 110.75316 * 70.17622 * 16 14 13 19 19 C 1.51648 * 101.92655 * 143.60398 * 18 16 14 20 20 C 1.37746 * 132.16644 * 164.11337 * 19 18 16 21 21 C 1.38343 * 119.97725 * 180.95990 * 20 19 18 22 22 C 1.38288 * 119.76742 * 0.02562 * 21 20 19 23 23 C 1.37928 * 120.35150 * 359.81351 * 22 21 20 24 24 C 1.50702 * 119.88208 * 179.97438 * 23 22 21 25 25 C 1.38883 * 107.04347 * 344.62680 * 19 18 16 26 26 O 1.36129 * 111.23091 * 358.91560 * 25 19 18 27 27 H 1.09006 * 109.46783 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47340 * 299.99368 * 1 2 3 29 29 H 1.08998 * 109.47609 * 60.00099 * 1 2 3 30 30 H 1.09009 * 109.47137 * 240.00650 * 2 1 3 31 31 H 1.08993 * 109.47672 * 120.00373 * 2 1 3 32 32 H 0.96999 * 120.00235 * 179.72806 * 8 7 5 33 33 H 1.08998 * 110.93765 * 261.75838 * 18 16 14 34 34 H 1.08995 * 110.94155 * 25.44162 * 18 16 14 35 35 H 1.08007 * 120.01065 * 0.93650 * 20 19 18 36 36 H 1.08001 * 120.11670 * 180.02562 * 21 20 19 37 37 H 1.07994 * 119.82500 * 179.83138 * 22 21 20 38 38 H 1.08994 * 109.47437 * 269.99564 * 24 23 22 39 39 H 1.09001 * 109.46427 * 29.99828 * 24 23 22 40 40 H 1.09000 * 109.47320 * 149.99225 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5419 1.4443 -0.1239 6 1 4.1471 1.8889 0.6522 7 6 4.1432 0.8785 -1.2280 8 7 5.4539 0.8805 -1.3364 9 14 3.0966 0.1028 -2.5668 10 1 2.8758 -1.3319 -2.2536 11 1 1.7878 0.8008 -2.6388 12 1 3.7941 0.2227 -3.8723 13 8 1.6558 2.0917 1.2407 14 6 0.4726 2.7254 1.2560 15 8 -0.2190 2.7376 0.2654 16 6 0.0075 3.4225 2.5084 17 1 0.0359 2.7428 3.3602 18 6 0.8584 4.6853 2.7812 19 6 -0.1743 5.6442 3.3413 20 6 -0.0565 6.8247 4.0413 21 6 -1.1912 7.4990 4.4554 22 6 -2.4409 6.9832 4.1645 23 6 -2.5613 5.8031 3.4609 24 6 -3.9284 5.2503 3.1501 25 6 -1.4239 5.1206 3.0357 26 8 -1.3137 3.9613 2.3308 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.8771 0.4789 -2.1113 33 1 1.6371 4.4792 3.5154 34 1 1.2886 5.0722 1.8574 35 1 0.9216 7.2235 4.2670 36 1 -1.1014 8.4249 5.0041 37 1 -3.3273 7.5074 4.4898 38 1 -4.2453 4.5898 3.9571 39 1 -4.6386 6.0714 3.0524 40 1 -3.8901 4.6900 2.2159 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341812.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:04 Heat of formation + Delta-G solvation = -108.848684 kcal Electronic energy + Delta-G solvation = -23170.490200 eV Core-core repulsion = 19722.207023 eV Total energy + Delta-G solvation = -3448.283177 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.61212 -41.30586 -38.70835 -37.71188 -35.65398 -34.62639 -33.97025 -32.18298 -31.03310 -29.75740 -27.72054 -26.10165 -24.72411 -23.33550 -22.82363 -21.87297 -21.54626 -19.48604 -18.87711 -18.22695 -18.06833 -17.91991 -17.00064 -16.82133 -16.26562 -15.42725 -15.30777 -15.06275 -14.78688 -14.59941 -14.33107 -14.14873 -14.06252 -13.93329 -13.76931 -13.46173 -13.24979 -13.21059 -13.17274 -12.92548 -12.62018 -12.42086 -12.20034 -12.07621 -11.77716 -11.66016 -11.57491 -11.29658 -11.18902 -10.78283 -9.66817 -9.14852 -8.47404 -6.56236 0.28130 0.35532 1.00298 1.20650 1.22154 1.29248 1.38110 2.16703 2.37431 2.72764 2.84582 3.19749 3.36150 3.67142 3.77894 3.84706 4.03800 4.06012 4.12305 4.20160 4.27828 4.40252 4.45754 4.50472 4.57472 4.68139 4.76531 4.78691 4.88071 4.89336 4.95963 4.96482 5.25226 5.26313 5.28904 5.39193 5.45144 5.52182 5.54200 5.60982 6.07938 6.13416 6.47810 6.72067 7.07990 8.68104 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028835 B = 0.003927 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.802646 B = 7129.237390 C = 7780.128169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.147 4.147 3 C 0.201 3.799 4 H 0.029 0.971 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.035 3.965 8 N -0.926 5.926 9 Si 0.933 3.067 10 H -0.248 1.248 11 H -0.259 1.259 12 H -0.283 1.283 13 O -0.339 6.339 14 C 0.456 3.544 15 O -0.522 6.522 16 C 0.096 3.904 17 H 0.151 0.849 18 C -0.092 4.092 19 C -0.178 4.178 20 C -0.079 4.079 21 C -0.136 4.136 22 C -0.087 4.087 23 C -0.113 4.113 24 C -0.109 4.109 25 C 0.067 3.933 26 O -0.300 6.300 27 H 0.077 0.923 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.276 0.724 33 H 0.131 0.869 34 H 0.081 0.919 35 H 0.148 0.852 36 H 0.162 0.838 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.101 10.227 13.287 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.185 4.185 3 C 0.147 3.853 4 H 0.046 0.954 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.165 4.165 8 N -0.564 5.564 9 Si 0.758 3.242 10 H -0.174 1.174 11 H -0.184 1.184 12 H -0.210 1.210 13 O -0.255 6.255 14 C 0.299 3.701 15 O -0.411 6.411 16 C 0.038 3.962 17 H 0.168 0.832 18 C -0.129 4.129 19 C -0.179 4.179 20 C -0.097 4.097 21 C -0.154 4.154 22 C -0.104 4.104 23 C -0.114 4.114 24 C -0.165 4.165 25 C 0.023 3.977 26 O -0.214 6.214 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.149 0.851 34 H 0.099 0.901 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.181 0.819 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.268 10.023 12.715 22.951 hybrid contribution 0.376 -0.637 -1.186 1.398 sum -15.892 9.386 11.528 21.761 Atomic orbital electron populations 1.21824 0.94728 1.02165 1.01233 1.22293 0.96285 0.97322 1.02554 1.20757 0.94258 0.89799 0.80462 0.95358 1.20928 0.89310 1.40126 1.07354 0.92967 1.25485 0.96019 0.95560 0.99466 1.69938 1.10219 1.45195 1.31086 0.86082 0.79242 0.80465 0.78379 1.17355 1.18370 1.20968 1.86459 1.34832 1.62681 1.41577 1.23498 0.80104 0.76618 0.89919 1.90632 1.55702 1.58252 1.36549 1.22758 0.82154 0.97685 0.93570 0.83172 1.21679 0.97773 0.90315 1.03168 1.20842 0.93110 0.99271 1.04676 1.20666 1.01017 0.92186 0.95827 1.21472 0.91271 1.01247 1.01377 1.21201 0.99575 0.93381 0.96258 1.19518 0.93400 0.97058 1.01375 1.20720 0.92350 1.01825 1.01652 1.19794 0.95807 0.87386 0.94736 1.86839 1.31176 1.36717 1.66712 0.90393 0.93634 0.93738 0.92061 0.90248 0.91459 0.85072 0.90103 0.83453 0.82002 0.81918 0.90293 0.89130 0.93410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.42 8.57 71.98 0.62 -4.80 16 2 C -0.15 -6.46 5.14 30.59 0.16 -6.30 16 3 C 0.20 10.10 1.84 29.85 0.05 10.16 16 4 H 0.03 1.53 6.23 -2.39 -0.01 1.52 16 5 C -0.54 -31.23 9.48 25.60 0.24 -30.99 16 6 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 7 C 0.04 2.01 5.45 84.65 0.46 2.47 16 8 N -0.93 -56.06 13.96 21.45 0.30 -55.76 16 9 Si 0.93 44.01 24.41 68.60 1.67 45.68 16 10 H -0.25 -10.77 6.82 99.48 0.68 -10.09 16 11 H -0.26 -12.11 6.54 99.48 0.65 -11.46 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 O -0.34 -15.27 9.81 -51.42 -0.50 -15.77 16 14 C 0.46 18.43 5.71 71.23 0.41 18.84 16 15 O -0.52 -24.09 13.72 28.18 0.39 -23.70 16 16 C 0.10 2.97 4.16 30.43 0.13 3.09 16 17 H 0.15 3.71 8.14 -2.38 -0.02 3.69 16 18 C -0.09 -2.49 6.64 30.73 0.20 -2.29 16 19 C -0.18 -4.46 6.27 -19.52 -0.12 -4.59 16 20 C -0.08 -1.49 10.03 22.18 0.22 -1.26 16 21 C -0.14 -2.02 10.07 22.31 0.22 -1.80 16 22 C -0.09 -1.37 9.66 22.21 0.21 -1.16 16 23 C -0.11 -2.50 5.90 -19.68 -0.12 -2.61 16 24 C -0.11 -2.03 9.98 71.24 0.71 -1.32 16 25 C 0.07 1.88 6.73 22.68 0.15 2.03 16 26 O -0.30 -10.00 10.26 -76.77 -0.79 -10.79 16 27 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 28 H 0.04 1.71 6.06 -2.39 -0.01 1.69 16 29 H 0.04 1.79 7.80 -2.39 -0.02 1.77 16 30 H 0.06 2.73 3.19 -2.38 -0.01 2.72 16 31 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 32 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 33 H 0.13 2.83 8.14 -2.39 -0.02 2.81 16 34 H 0.08 2.45 7.92 -2.39 -0.02 2.43 16 35 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.20 8.08 -2.39 -0.02 1.18 16 40 H 0.05 1.10 8.00 -2.39 -0.02 1.08 16 Total: -1.00 -71.70 326.77 5.59 -66.12 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.96 Total: 14.75 kcal Atomic # 6 Polarization: -24.08 SS G_CDS: 3.56 Total: -20.53 kcal Atomic # 7 Polarization: -56.06 SS G_CDS: 0.30 Total: -55.76 kcal Atomic # 8 Polarization: -49.36 SS G_CDS: -0.91 Total: -50.27 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.67 Total: 45.68 kcal Total: -71.70 5.59 -66.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341812.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.732 kcal (2) G-P(sol) polarization free energy of solvation -71.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds