Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.09003 * 109.46965 * 54.99965 * 3 2 1 5 5 C 1.50698 * 109.47340 * 175.00013 * 3 2 1 6 6 H 1.07994 * 119.99893 * 120.00296 * 5 3 2 7 7 C 1.37881 * 119.99749 * 300.00207 * 5 3 2 8 8 N 1.31511 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46770 * 59.99830 * 9 7 5 11 11 H 1.48494 * 109.47087 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46888 * 300.00284 * 9 7 5 13 13 O 1.45202 * 109.47158 * 295.00404 * 3 2 1 14 14 C 1.34228 * 117.00002 * 89.99792 * 13 3 2 15 15 O 1.20820 * 120.00062 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99698 * 179.97438 * 14 13 3 17 17 H 1.08995 * 110.67083 * 306.76303 * 16 14 13 18 18 C 1.54707 * 110.74865 * 70.18451 * 16 14 13 19 19 C 1.51642 * 101.93430 * 143.57462 * 18 16 14 20 20 C 1.37746 * 132.16572 * 164.23932 * 19 18 16 21 21 C 1.38355 * 119.97461 * 180.95267 * 20 19 18 22 22 C 1.38281 * 119.76789 * 359.97438 * 21 20 19 23 23 C 1.37930 * 120.35229 * 359.78872 * 22 21 20 24 24 C 1.50703 * 119.88158 * 180.02562 * 23 22 21 25 25 C 1.38880 * 107.04662 * 344.73211 * 19 18 16 26 26 O 1.36135 * 111.22410 * 358.76064 * 25 19 18 27 27 H 1.08999 * 109.46871 * 299.99728 * 1 2 3 28 28 H 1.08996 * 109.47008 * 59.99701 * 1 2 3 29 29 H 1.08996 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46871 * 240.00272 * 2 1 3 31 31 H 1.08996 * 109.47008 * 120.00299 * 2 1 3 32 32 H 0.96996 * 120.00332 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.93645 * 261.73208 * 18 16 14 34 34 H 1.08998 * 110.93770 * 25.37648 * 18 16 14 35 35 H 1.07996 * 120.01212 * 1.22888 * 20 19 18 36 36 H 1.07995 * 120.11267 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.82589 * 179.82000 * 22 21 20 38 38 H 1.08997 * 109.46706 * 90.00610 * 24 23 22 39 39 H 1.09000 * 109.47235 * 210.00291 * 24 23 22 40 40 H 1.09004 * 109.46826 * 330.00750 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3364 2.1728 9 14 6.0051 0.8798 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2154 2.6498 12 1 6.5967 0.1451 0.2342 13 8 1.6560 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2559 15 8 -0.2191 2.7370 -0.2655 16 6 0.0076 3.4226 -2.5082 17 1 0.7664 4.1186 -2.8657 18 6 -0.3583 2.3940 -3.6044 19 6 -1.5490 3.0560 -4.2706 20 6 -2.1790 2.8294 -5.4744 21 6 -3.2559 3.6130 -5.8492 22 6 -3.6958 4.6214 -5.0115 23 6 -3.0694 4.8468 -3.8034 24 6 -3.5580 5.9483 -2.8984 25 6 -1.9864 4.0606 -3.4174 26 8 -1.2391 4.1015 -2.2802 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0614 2.9498 33 1 0.4627 2.2683 -4.3102 34 1 -0.6400 1.4380 -3.1630 35 1 -1.8352 2.0376 -6.1234 36 1 -3.7513 3.4376 -6.7927 37 1 -4.5345 5.2355 -5.3044 38 1 -4.3181 5.5541 -2.2240 39 1 -2.7226 6.3377 -2.3164 40 1 -3.9865 6.7497 -3.5002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = -100.628457 kcal Electronic energy + Delta-G solvation = -23144.527358 eV Core-core repulsion = 19696.600637 eV Total energy + Delta-G solvation = -3447.926722 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.42222 -39.51942 -37.62311 -35.75772 -33.77909 -33.49149 -31.47532 -31.17936 -29.86185 -27.30861 -26.89186 -24.70991 -23.18263 -22.24202 -21.01355 -20.81757 -19.56779 -17.75260 -17.24457 -16.93571 -16.35032 -16.08411 -15.54333 -15.12427 -14.66616 -14.19900 -14.00993 -13.67431 -13.31256 -13.24119 -13.04456 -12.87267 -12.58028 -12.39661 -12.25711 -11.75801 -11.60265 -11.54117 -11.37851 -11.23597 -11.13403 -10.98340 -10.88794 -10.70514 -10.33583 -9.85124 -9.65177 -9.42628 -8.88205 -8.81459 -8.50010 -8.17596 -6.22526 -4.30388 1.14788 1.24628 2.63039 2.84946 3.23960 3.27964 3.30687 3.50410 3.79420 4.26929 4.36773 4.51272 4.70792 4.81592 4.99019 5.09452 5.10070 5.14138 5.34246 5.44013 5.53048 5.58595 5.65785 5.70836 5.79977 6.09877 6.18237 6.23657 6.24553 6.27433 6.37573 6.39782 6.50065 6.80052 6.89766 7.08593 7.10743 7.16341 7.56044 7.67467 7.87211 8.09046 8.52831 8.80764 9.34842 10.84173 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.003543 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.405033 B = 7900.002035 C = 7961.735675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.049 0.951 5 C -0.524 4.524 6 H 0.069 0.931 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.349 6.349 14 C 0.456 3.544 15 O -0.491 6.491 16 C 0.088 3.912 17 H 0.121 0.879 18 C -0.094 4.094 19 C -0.167 4.167 20 C -0.074 4.074 21 C -0.147 4.147 22 C -0.089 4.089 23 C -0.102 4.102 24 C -0.110 4.110 25 C 0.108 3.892 26 O -0.274 6.274 27 H 0.054 0.946 28 H 0.029 0.971 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.268 0.732 33 H 0.107 0.893 34 H 0.097 0.903 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.121 6.035 -14.692 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.562 4.562 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.740 3.260 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.265 6.265 14 C 0.297 3.703 15 O -0.379 6.379 16 C 0.031 3.969 17 H 0.138 0.862 18 C -0.131 4.131 19 C -0.168 4.168 20 C -0.092 4.092 21 C -0.165 4.165 22 C -0.107 4.107 23 C -0.103 4.103 24 C -0.167 4.167 25 C 0.062 3.938 26 O -0.187 6.187 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.148 0.852 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.306 6.005 -13.932 18.920 hybrid contribution 0.964 -0.240 0.207 1.015 sum -10.341 5.765 -13.725 18.126 Atomic orbital electron populations 1.21875 0.98357 0.99133 1.00735 1.22038 0.92595 0.99229 1.03541 1.20771 0.95131 0.88764 0.78262 0.93355 1.20984 0.89436 1.39349 1.06420 0.91255 1.24887 0.99331 0.94663 0.94990 1.69873 1.35570 1.37561 1.09454 0.86316 0.83693 0.78527 0.77510 1.19946 1.21004 1.19897 1.86455 1.33093 1.62336 1.44654 1.22482 0.81657 0.77825 0.88366 1.90658 1.55157 1.57131 1.34961 1.22706 0.86889 0.94555 0.92762 0.86155 1.21678 0.96587 0.98717 0.96129 1.20776 1.00654 0.98337 0.97020 1.20284 0.95246 0.99223 0.94435 1.20989 0.97858 0.97235 1.00452 1.20756 0.99152 0.98053 0.92784 1.19122 0.96196 0.98349 0.96609 1.20696 1.01785 0.95740 0.98443 1.19435 0.93697 0.94531 0.86097 1.86925 1.27602 1.73191 1.30965 0.92737 0.95149 0.94641 0.93821 0.87157 0.92233 0.87492 0.88431 0.85635 0.85495 0.85245 0.91192 0.91178 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.15 8.57 37.16 0.32 -2.83 16 2 C -0.14 -3.33 5.49 -26.73 -0.15 -3.47 16 3 C 0.22 5.83 2.25 -27.89 -0.06 5.77 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.40 8.90 -34.44 -0.31 -14.70 16 6 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -24.76 11.29 55.43 0.63 -24.13 16 9 Si 0.91 20.73 29.54 -169.99 -5.02 15.71 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 O -0.35 -8.05 9.81 -39.25 -0.38 -8.43 16 14 C 0.46 9.60 5.71 36.00 0.21 9.80 16 15 O -0.49 -11.83 13.72 -25.23 -0.35 -12.18 16 16 C 0.09 1.44 4.16 -26.99 -0.11 1.33 16 17 H 0.12 1.67 8.14 -51.93 -0.42 1.24 16 18 C -0.09 -1.29 6.64 -26.52 -0.18 -1.46 16 19 C -0.17 -2.21 6.27 -104.10 -0.65 -2.86 16 20 C -0.07 -0.79 10.03 -39.72 -0.40 -1.19 16 21 C -0.15 -1.40 10.07 -39.52 -0.40 -1.80 16 22 C -0.09 -0.89 9.66 -39.68 -0.38 -1.27 16 23 C -0.10 -1.26 5.90 -104.34 -0.62 -1.87 16 24 C -0.11 -1.16 9.98 36.01 0.36 -0.80 16 25 C 0.11 1.59 6.73 -38.96 -0.26 1.33 16 26 O -0.27 -4.73 10.27 -39.26 -0.40 -5.13 16 27 H 0.05 1.26 7.80 -51.93 -0.40 0.86 16 28 H 0.03 0.64 6.06 -51.93 -0.31 0.32 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 32 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 33 H 0.11 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.10 1.41 7.92 -51.93 -0.41 1.00 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.81 8.01 -51.93 -0.42 0.39 16 40 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 LS Contribution 333.55 15.07 5.03 5.03 Total: -1.00 -30.88 333.55 -8.80 -39.69 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -5.57 Total: 1.85 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -2.73 Total: -12.41 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.63 Total: -24.13 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -1.13 Total: -25.73 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.88 -8.80 -39.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.941 kcal (2) G-P(sol) polarization free energy of solvation -30.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds