Wall clock time and date at job start Tue Mar 31 2020 06:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52996 * 109.47408 * 2 1 4 4 H 1.09003 * 109.46965 * 54.99965 * 3 2 1 5 5 C 1.50698 * 109.47340 * 175.00013 * 3 2 1 6 6 H 1.07994 * 119.99893 * 120.00296 * 5 3 2 7 7 C 1.37881 * 119.99749 * 300.00207 * 5 3 2 8 8 N 1.31511 * 120.00233 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46770 * 59.99830 * 9 7 5 11 11 H 1.48494 * 109.47087 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.46888 * 300.00284 * 9 7 5 13 13 O 1.45202 * 109.47158 * 295.00404 * 3 2 1 14 14 C 1.34228 * 117.00002 * 89.99792 * 13 3 2 15 15 O 1.20820 * 120.00062 * 359.97438 * 14 13 3 16 16 C 1.50699 * 119.99698 * 179.97438 * 14 13 3 17 17 H 1.08995 * 110.67083 * 306.76303 * 16 14 13 18 18 C 1.54707 * 110.74865 * 70.18451 * 16 14 13 19 19 C 1.51642 * 101.93430 * 143.57462 * 18 16 14 20 20 C 1.37746 * 132.16572 * 164.23932 * 19 18 16 21 21 C 1.38355 * 119.97461 * 180.95267 * 20 19 18 22 22 C 1.38281 * 119.76789 * 359.97438 * 21 20 19 23 23 C 1.37930 * 120.35229 * 359.78872 * 22 21 20 24 24 C 1.50703 * 119.88158 * 180.02562 * 23 22 21 25 25 C 1.38880 * 107.04662 * 344.73211 * 19 18 16 26 26 O 1.36135 * 111.22410 * 358.76064 * 25 19 18 27 27 H 1.08999 * 109.46871 * 299.99728 * 1 2 3 28 28 H 1.08996 * 109.47008 * 59.99701 * 1 2 3 29 29 H 1.08996 * 109.47260 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46871 * 240.00272 * 2 1 3 31 31 H 1.08996 * 109.47008 * 120.00299 * 2 1 3 32 32 H 0.96996 * 120.00332 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.93645 * 261.73208 * 18 16 14 34 34 H 1.08998 * 110.93770 * 25.37648 * 18 16 14 35 35 H 1.07996 * 120.01212 * 1.22888 * 20 19 18 36 36 H 1.07995 * 120.11267 * 179.97438 * 21 20 19 37 37 H 1.08002 * 119.82589 * 179.82000 * 22 21 20 38 38 H 1.08997 * 109.46706 * 90.00610 * 24 23 22 39 39 H 1.09000 * 109.47235 * 210.00291 * 24 23 22 40 40 H 1.09004 * 109.46826 * 330.00750 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8888 -0.6523 7 6 4.1433 0.8782 1.2280 8 7 3.4063 0.3364 2.1728 9 14 6.0051 0.8798 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2154 2.6498 12 1 6.5967 0.1451 0.2342 13 8 1.6560 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2559 15 8 -0.2191 2.7370 -0.2655 16 6 0.0076 3.4226 -2.5082 17 1 0.7664 4.1186 -2.8657 18 6 -0.3583 2.3940 -3.6044 19 6 -1.5490 3.0560 -4.2706 20 6 -2.1790 2.8294 -5.4744 21 6 -3.2559 3.6130 -5.8492 22 6 -3.6958 4.6214 -5.0115 23 6 -3.0694 4.8468 -3.8034 24 6 -3.5580 5.9483 -2.8984 25 6 -1.9864 4.0606 -3.4174 26 8 -1.2391 4.1015 -2.2802 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8293 -0.0614 2.9498 33 1 0.4627 2.2683 -4.3102 34 1 -0.6400 1.4380 -3.1630 35 1 -1.8352 2.0376 -6.1234 36 1 -3.7513 3.4376 -6.7927 37 1 -4.5345 5.2355 -5.3044 38 1 -4.3181 5.5541 -2.2240 39 1 -2.7226 6.3377 -2.3164 40 1 -3.9865 6.7497 -3.5002 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:09 Heat of formation + Delta-G solvation = -116.583853 kcal Electronic energy + Delta-G solvation = -23145.219236 eV Core-core repulsion = 19696.600637 eV Total energy + Delta-G solvation = -3448.618599 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.58218 -41.17842 -38.66604 -37.59020 -35.60399 -34.61358 -33.42853 -32.18679 -30.99554 -29.28651 -27.72300 -26.08686 -25.05028 -23.21765 -22.56645 -21.84853 -21.40620 -19.22537 -18.92189 -18.15286 -17.80196 -17.70537 -17.05521 -16.52641 -16.27693 -15.41242 -15.14987 -14.87779 -14.75079 -14.52345 -14.39239 -14.09545 -13.81754 -13.75497 -13.40791 -13.28100 -13.20318 -13.18599 -12.90345 -12.81531 -12.59956 -12.40831 -12.19089 -12.16765 -11.81311 -11.76487 -11.52004 -11.28533 -10.88956 -10.55678 -9.66011 -9.14201 -8.29242 -6.46950 0.29112 0.36623 1.07903 1.31082 1.43985 1.45853 1.55087 2.32321 2.46395 2.74129 3.00529 3.21955 3.44150 3.73318 3.80416 3.90338 4.06454 4.28152 4.30842 4.32769 4.40813 4.46932 4.48954 4.58562 4.68780 4.75435 4.76907 4.78101 4.96112 5.02348 5.15110 5.26100 5.28720 5.40243 5.45762 5.47842 5.54086 5.61781 5.62908 5.89833 6.04091 6.14575 6.56299 6.84283 7.23920 8.77436 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031368 B = 0.003543 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.405033 B = 7900.002035 C = 7961.735675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.552 4.552 6 H 0.070 0.930 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.269 1.269 11 H -0.278 1.278 12 H -0.262 1.262 13 O -0.349 6.349 14 C 0.453 3.547 15 O -0.529 6.529 16 C 0.093 3.907 17 H 0.145 0.855 18 C -0.087 4.087 19 C -0.177 4.177 20 C -0.077 4.077 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.115 4.115 24 C -0.109 4.109 25 C 0.065 3.935 26 O -0.304 6.304 27 H 0.031 0.969 28 H 0.034 0.966 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.088 0.912 32 H 0.271 0.729 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.068 0.932 39 H 0.049 0.951 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 6.044 -17.721 21.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.088 0.912 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.194 1.194 11 H -0.203 1.203 12 H -0.186 1.186 13 O -0.266 6.266 14 C 0.296 3.704 15 O -0.418 6.418 16 C 0.036 3.964 17 H 0.162 0.838 18 C -0.124 4.124 19 C -0.178 4.178 20 C -0.094 4.094 21 C -0.154 4.154 22 C -0.104 4.104 23 C -0.116 4.116 24 C -0.166 4.166 25 C 0.020 3.980 26 O -0.218 6.218 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.169 0.831 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.753 6.021 -16.989 21.518 hybrid contribution 0.954 -0.184 1.091 1.461 sum -10.799 5.836 -15.897 20.085 Atomic orbital electron populations 1.21731 0.96581 1.00692 0.99835 1.21877 0.94115 0.97901 1.02774 1.20488 0.94794 0.89336 0.78152 0.97711 1.21292 0.90142 1.40302 1.07169 0.91185 1.25822 1.04359 0.93765 0.94262 1.70005 1.37633 1.37735 1.09856 0.85234 0.77460 0.78787 0.77949 1.19421 1.20335 1.18630 1.86436 1.34457 1.62719 1.42976 1.23489 0.80349 0.76835 0.89706 1.90634 1.55885 1.58432 1.36897 1.22779 0.87654 0.95524 0.90480 0.83767 1.21663 0.98052 0.97140 0.95573 1.20851 1.00783 0.98195 0.97946 1.20671 0.95244 0.99906 0.93622 1.21481 0.96747 0.95782 1.01363 1.21193 0.99400 0.98296 0.91509 1.19520 0.95785 0.98458 0.97822 1.20718 1.01061 0.96256 0.98567 1.19847 0.95233 0.96795 0.86091 1.86866 1.28173 1.73701 1.33110 0.94939 0.94738 0.91691 0.92911 0.89336 0.91958 0.84795 0.89754 0.83112 0.81875 0.81974 0.91336 0.93144 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.88 8.57 71.98 0.62 -5.27 16 2 C -0.13 -6.48 5.49 30.60 0.17 -6.31 16 3 C 0.23 12.31 2.25 29.85 0.07 12.38 16 4 H 0.01 0.32 7.16 -2.39 -0.02 0.30 16 5 C -0.55 -31.06 8.90 25.60 0.23 -30.84 16 6 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 7 C 0.02 0.98 5.29 84.66 0.45 1.43 16 8 N -0.91 -52.31 11.29 21.45 0.24 -52.07 16 9 Si 0.98 42.49 29.54 68.60 2.03 44.52 16 10 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 12 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 13 O -0.35 -16.68 9.81 -51.39 -0.50 -17.18 16 14 C 0.45 19.90 5.71 71.24 0.41 20.30 16 15 O -0.53 -27.03 13.72 28.19 0.39 -26.64 16 16 C 0.09 3.09 4.16 30.43 0.13 3.22 16 17 H 0.15 4.00 8.14 -2.39 -0.02 3.98 16 18 C -0.09 -2.33 6.64 30.73 0.20 -2.13 16 19 C -0.18 -4.45 6.27 -19.53 -0.12 -4.57 16 20 C -0.08 -1.40 10.03 22.18 0.22 -1.18 16 21 C -0.14 -2.01 10.07 22.31 0.22 -1.78 16 22 C -0.09 -1.42 9.66 22.21 0.21 -1.21 16 23 C -0.12 -2.69 5.90 -19.68 -0.12 -2.81 16 24 C -0.11 -2.24 9.98 71.24 0.71 -1.52 16 25 C 0.06 1.89 6.73 22.68 0.15 2.05 16 26 O -0.30 -10.91 10.27 -76.84 -0.79 -11.70 16 27 H 0.03 1.56 7.80 -2.39 -0.02 1.54 16 28 H 0.03 1.48 6.06 -2.39 -0.01 1.47 16 29 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.05 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.09 4.87 5.95 -2.39 -0.01 4.85 16 32 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.13 2.75 8.14 -2.39 -0.02 2.73 16 34 H 0.08 2.45 7.92 -2.39 -0.02 2.43 16 35 H 0.15 1.94 8.06 -2.91 -0.02 1.92 16 36 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 38 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.21 8.01 -2.39 -0.02 1.19 16 40 H 0.09 1.32 8.08 -2.39 -0.02 1.31 16 Total: -1.00 -70.58 333.55 5.95 -64.63 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 1.04 Total: 16.68 kcal Atomic # 6 Polarization: -21.79 SS G_CDS: 3.55 Total: -18.23 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 0.24 Total: -52.07 kcal Atomic # 8 Polarization: -54.62 SS G_CDS: -0.91 Total: -55.52 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -70.58 5.95 -64.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.951 kcal (2) G-P(sol) polarization free energy of solvation -70.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds