Wall clock time and date at job start Tue Mar 31 2020 06:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.08998 * 109.47649 * 54.99450 * 3 2 1 5 5 C 1.50706 * 109.47433 * 175.00085 * 3 2 1 6 6 H 1.07996 * 120.00403 * 119.99469 * 5 3 2 7 7 C 1.37881 * 119.99296 * 300.00059 * 5 3 2 8 8 N 1.31513 * 120.00212 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99387 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47097 * 90.00099 * 9 7 5 11 11 H 1.48498 * 109.47053 * 209.99621 * 9 7 5 12 12 H 1.48490 * 109.47514 * 330.00014 * 9 7 5 13 13 O 1.45204 * 109.47009 * 294.99770 * 3 2 1 14 14 C 1.34224 * 116.99971 * 90.00164 * 13 3 2 15 15 O 1.20825 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00129 * 180.02562 * 14 13 3 17 17 H 1.08998 * 110.66618 * 58.20836 * 16 14 13 18 18 C 1.54706 * 110.74578 * 294.99761 * 16 14 13 19 19 C 1.51650 * 101.92543 * 216.39324 * 18 16 14 20 20 C 1.37742 * 132.17024 * 195.40725 * 19 18 16 21 21 C 1.38342 * 119.97472 * 179.63669 * 20 19 18 22 22 C 1.38286 * 119.77153 * 0.02562 * 21 20 19 23 23 C 1.37931 * 120.34950 * 0.16388 * 22 21 20 24 24 C 1.50695 * 119.88287 * 180.02562 * 23 22 21 25 25 C 1.38876 * 107.04078 * 15.38615 * 19 18 16 26 26 O 1.36136 * 111.23426 * 1.06807 * 25 19 18 27 27 H 1.09005 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47616 * 300.00318 * 1 2 3 29 29 H 1.09004 * 109.47085 * 60.00290 * 1 2 3 30 30 H 1.09007 * 109.47090 * 239.99715 * 2 1 3 31 31 H 1.09004 * 109.47085 * 119.99710 * 2 1 3 32 32 H 0.97000 * 119.99710 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.93946 * 334.55126 * 18 16 14 34 34 H 1.09000 * 110.94098 * 98.19763 * 18 16 14 35 35 H 1.08000 * 120.01174 * 359.65915 * 20 19 18 36 36 H 1.08003 * 120.11637 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.82798 * 180.18932 * 22 21 20 38 38 H 1.09004 * 109.47181 * 90.00238 * 24 23 22 39 39 H 1.09004 * 109.47506 * 210.00212 * 24 23 22 40 40 H 1.09004 * 109.47425 * 330.00172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4060 0.3374 2.1733 9 14 6.0049 0.8800 1.3812 10 1 6.4427 2.1130 2.0837 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8395 0.0271 13 8 1.6558 2.0916 -1.2408 14 6 0.4728 2.7254 -1.2561 15 8 -0.2189 2.7378 -0.2654 16 6 0.0070 3.4215 -2.5089 17 1 -0.0486 2.7197 -3.3410 18 6 0.9371 4.6085 -2.8543 19 6 -0.0446 5.6273 -3.4003 20 6 0.1311 6.7806 -4.1327 21 6 -0.9665 7.5327 -4.5116 22 6 -2.2372 7.1224 -4.1522 23 6 -2.4152 5.9700 -3.4155 24 6 -3.8047 5.5324 -3.0300 25 6 -1.3152 5.2084 -3.0278 26 8 -1.2613 4.0634 -2.2934 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8291 -0.0604 2.9503 33 1 1.4343 4.9866 -1.9611 34 1 1.6664 4.3241 -3.6128 35 1 1.1253 7.0974 -4.4113 36 1 -0.8313 8.4376 -5.0855 37 1 -3.0948 7.7072 -4.4501 38 1 -4.2092 4.8822 -3.8058 39 1 -3.7659 4.9900 -2.0853 40 1 -4.4442 6.4082 -2.9201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835341815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:12 Heat of formation + Delta-G solvation = -100.550845 kcal Electronic energy + Delta-G solvation = -23086.819415 eV Core-core repulsion = 19638.896059 eV Total energy + Delta-G solvation = -3447.923356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.40517 -39.51709 -37.61510 -35.75718 -33.79564 -33.46634 -31.49942 -31.12084 -29.84556 -27.32752 -26.88093 -24.68863 -23.15299 -22.23850 -21.02797 -20.79574 -19.56612 -17.70628 -17.24567 -16.84066 -16.53312 -16.01542 -15.49325 -15.16960 -14.68757 -14.16485 -13.96993 -13.65974 -13.37914 -13.15883 -12.95545 -12.87226 -12.66863 -12.36782 -12.12353 -11.91852 -11.58871 -11.50523 -11.33487 -11.25300 -11.10652 -10.98909 -10.86496 -10.71136 -10.32641 -9.83488 -9.65212 -9.42756 -8.87106 -8.80101 -8.50489 -8.16383 -6.22969 -4.30694 1.16372 1.25623 2.67055 2.81147 3.21865 3.27976 3.31888 3.51444 3.80078 4.26918 4.38636 4.52822 4.72237 4.82886 4.99423 5.09071 5.11611 5.15240 5.35953 5.45469 5.53673 5.57856 5.69530 5.72945 5.84185 6.11327 6.19584 6.25113 6.26231 6.28846 6.38885 6.41102 6.51181 6.80997 6.91156 7.09444 7.11703 7.17065 7.56103 7.67682 7.87189 8.08988 8.52764 8.80711 9.34586 10.83798 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.003837 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.657363 B = 7295.175707 C = 8134.425637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.070 0.930 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.349 6.349 14 C 0.456 3.544 15 O -0.491 6.491 16 C 0.089 3.911 17 H 0.120 0.880 18 C -0.095 4.095 19 C -0.167 4.167 20 C -0.074 4.074 21 C -0.147 4.147 22 C -0.090 4.090 23 C -0.102 4.102 24 C -0.111 4.111 25 C 0.107 3.893 26 O -0.274 6.274 27 H 0.035 0.965 28 H 0.053 0.947 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.110 0.890 32 H 0.267 0.733 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.130 0.870 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.532 10.419 -13.211 18.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.170 3.830 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.088 0.912 7 C -0.139 4.139 8 N -0.524 5.524 9 Si 0.739 3.261 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.265 6.265 14 C 0.297 3.703 15 O -0.379 6.379 16 C 0.032 3.968 17 H 0.138 0.862 18 C -0.132 4.132 19 C -0.168 4.168 20 C -0.092 4.092 21 C -0.165 4.165 22 C -0.108 4.108 23 C -0.103 4.103 24 C -0.167 4.167 25 C 0.062 3.938 26 O -0.187 6.187 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -8.846 10.167 -12.530 18.401 hybrid contribution 1.031 -0.125 0.248 1.068 sum -7.815 10.042 -12.282 17.685 Atomic orbital electron populations 1.21870 0.98300 0.99174 1.00781 1.22038 0.92676 0.99205 1.03531 1.20779 0.95143 0.88790 0.78252 0.93376 1.21019 0.89424 1.39267 1.06387 0.91213 1.24889 0.99317 0.94668 0.95020 1.69887 1.35469 1.37649 1.09418 0.86266 0.83724 0.77741 0.78381 1.20380 1.20910 1.19554 1.86456 1.33090 1.62292 1.44686 1.22494 0.81697 0.77760 0.88398 1.90660 1.55145 1.57165 1.34956 1.22684 0.82561 0.95889 0.95702 0.86240 1.21693 0.97119 0.91337 1.03021 1.20799 0.93973 0.98667 1.03328 1.20288 0.99392 0.92862 0.96636 1.20992 0.92208 1.00564 1.02758 1.20756 0.97631 0.95076 0.97325 1.19114 0.93722 0.96117 1.01331 1.20700 0.92155 1.01561 1.02305 1.19438 0.94091 0.87856 0.92459 1.86913 1.35356 1.34019 1.62435 0.94629 0.92756 0.95039 0.93809 0.87172 0.92296 0.88198 0.87476 0.85603 0.85501 0.85260 0.91296 0.91030 0.91566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.57 37.15 0.32 -2.85 16 2 C -0.14 -3.35 5.49 -26.74 -0.15 -3.50 16 3 C 0.22 5.82 2.25 -27.88 -0.06 5.75 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.31 8.90 -34.44 -0.31 -14.61 16 6 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.72 11.29 55.43 0.63 -24.09 16 9 Si 0.91 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 O -0.35 -8.02 9.81 -39.24 -0.38 -8.40 16 14 C 0.46 9.58 5.71 36.01 0.21 9.78 16 15 O -0.49 -11.82 13.72 -25.24 -0.35 -12.17 16 16 C 0.09 1.45 4.16 -26.98 -0.11 1.34 16 17 H 0.12 1.63 8.14 -51.93 -0.42 1.21 16 18 C -0.09 -1.32 6.64 -26.52 -0.18 -1.50 16 19 C -0.17 -2.24 6.27 -104.10 -0.65 -2.89 16 20 C -0.07 -0.81 10.03 -39.72 -0.40 -1.21 16 21 C -0.15 -1.42 10.07 -39.53 -0.40 -1.82 16 22 C -0.09 -0.91 9.66 -39.68 -0.38 -1.29 16 23 C -0.10 -1.27 5.90 -104.35 -0.62 -1.88 16 24 C -0.11 -1.17 9.98 36.00 0.36 -0.81 16 25 C 0.11 1.59 6.74 -38.95 -0.26 1.32 16 26 O -0.27 -4.73 10.25 -39.29 -0.40 -5.13 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 1.26 7.80 -51.93 -0.40 0.86 16 29 H 0.03 0.67 6.06 -51.93 -0.31 0.35 16 30 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 31 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 32 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 33 H 0.10 1.50 7.92 -51.93 -0.41 1.09 16 34 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 37 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.87 8.00 -51.93 -0.42 0.45 16 40 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -30.83 333.54 -8.80 -39.63 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.57 Total: 2.04 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: -2.73 Total: -12.55 kcal Atomic # 7 Polarization: -24.72 SS G_CDS: 0.63 Total: -24.09 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.13 Total: -25.70 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.83 -8.80 -39.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.918 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds