Wall clock time and date at job start Tue Mar 31 2020 06:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 H 1.08998 * 109.47649 * 54.99450 * 3 2 1 5 5 C 1.50706 * 109.47433 * 175.00085 * 3 2 1 6 6 H 1.07996 * 120.00403 * 119.99469 * 5 3 2 7 7 C 1.37881 * 119.99296 * 300.00059 * 5 3 2 8 8 N 1.31513 * 120.00212 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 119.99387 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47097 * 90.00099 * 9 7 5 11 11 H 1.48498 * 109.47053 * 209.99621 * 9 7 5 12 12 H 1.48490 * 109.47514 * 330.00014 * 9 7 5 13 13 O 1.45204 * 109.47009 * 294.99770 * 3 2 1 14 14 C 1.34224 * 116.99971 * 90.00164 * 13 3 2 15 15 O 1.20825 * 120.00412 * 0.02562 * 14 13 3 16 16 C 1.50706 * 120.00129 * 180.02562 * 14 13 3 17 17 H 1.08998 * 110.66618 * 58.20836 * 16 14 13 18 18 C 1.54706 * 110.74578 * 294.99761 * 16 14 13 19 19 C 1.51650 * 101.92543 * 216.39324 * 18 16 14 20 20 C 1.37742 * 132.17024 * 195.40725 * 19 18 16 21 21 C 1.38342 * 119.97472 * 179.63669 * 20 19 18 22 22 C 1.38286 * 119.77153 * 0.02562 * 21 20 19 23 23 C 1.37931 * 120.34950 * 0.16388 * 22 21 20 24 24 C 1.50695 * 119.88287 * 180.02562 * 23 22 21 25 25 C 1.38876 * 107.04078 * 15.38615 * 19 18 16 26 26 O 1.36136 * 111.23426 * 1.06807 * 25 19 18 27 27 H 1.09005 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47616 * 300.00318 * 1 2 3 29 29 H 1.09004 * 109.47085 * 60.00290 * 1 2 3 30 30 H 1.09007 * 109.47090 * 239.99715 * 2 1 3 31 31 H 1.09004 * 109.47085 * 119.99710 * 2 1 3 32 32 H 0.97000 * 119.99710 * 180.02562 * 8 7 5 33 33 H 1.09000 * 110.93946 * 334.55126 * 18 16 14 34 34 H 1.09000 * 110.94098 * 98.19763 * 18 16 14 35 35 H 1.08000 * 120.01174 * 359.65915 * 20 19 18 36 36 H 1.08003 * 120.11637 * 179.97438 * 21 20 19 37 37 H 1.07995 * 119.82798 * 180.18932 * 22 21 20 38 38 H 1.09004 * 109.47181 * 90.00238 * 24 23 22 39 39 H 1.09004 * 109.47506 * 210.00212 * 24 23 22 40 40 H 1.09004 * 109.47425 * 330.00172 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6053 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6523 7 6 4.1432 0.8784 1.2280 8 7 3.4060 0.3374 2.1733 9 14 6.0049 0.8800 1.3812 10 1 6.4427 2.1130 2.0837 11 1 6.4390 -0.3110 2.1547 12 1 6.6131 0.8395 0.0271 13 8 1.6558 2.0916 -1.2408 14 6 0.4728 2.7254 -1.2561 15 8 -0.2189 2.7378 -0.2654 16 6 0.0070 3.4215 -2.5089 17 1 -0.0486 2.7197 -3.3410 18 6 0.9371 4.6085 -2.8543 19 6 -0.0446 5.6273 -3.4003 20 6 0.1311 6.7806 -4.1327 21 6 -0.9665 7.5327 -4.5116 22 6 -2.2372 7.1224 -4.1522 23 6 -2.4152 5.9700 -3.4155 24 6 -3.8047 5.5324 -3.0300 25 6 -1.3152 5.2084 -3.0278 26 8 -1.2613 4.0634 -2.2934 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.8291 -0.0604 2.9503 33 1 1.4343 4.9866 -1.9611 34 1 1.6664 4.3241 -3.6128 35 1 1.1253 7.0974 -4.4113 36 1 -0.8313 8.4376 -5.0855 37 1 -3.0948 7.7072 -4.4501 38 1 -4.2092 4.8822 -3.8058 39 1 -3.7659 4.9900 -2.0853 40 1 -4.4442 6.4082 -2.9201 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835341815.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:11 Heat of formation + Delta-G solvation = -116.442660 kcal Electronic energy + Delta-G solvation = -23087.508536 eV Core-core repulsion = 19638.896059 eV Total energy + Delta-G solvation = -3448.612477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.57286 -41.18064 -38.66726 -37.58982 -35.61093 -34.61269 -33.42309 -32.16467 -30.99541 -29.30229 -27.72101 -26.09220 -25.00918 -23.23674 -22.57971 -21.84020 -21.40863 -19.20811 -18.82151 -18.19424 -17.96054 -17.70384 -16.84755 -16.64800 -16.27939 -15.46836 -15.01889 -14.89628 -14.74743 -14.59151 -14.28172 -14.06815 -13.96521 -13.68386 -13.41756 -13.28319 -13.20743 -13.17626 -12.89911 -12.82924 -12.60608 -12.41583 -12.18393 -12.14042 -11.79462 -11.76793 -11.52402 -11.28804 -10.87579 -10.56246 -9.66184 -9.14140 -8.29211 -6.46656 0.28975 0.36208 1.10627 1.28301 1.43787 1.44421 1.56834 2.32447 2.45625 2.74025 3.00832 3.22859 3.43644 3.74249 3.80054 3.89693 4.06441 4.27915 4.32227 4.34482 4.40484 4.47047 4.49608 4.59260 4.69466 4.76908 4.77312 4.77766 4.96159 5.03013 5.15527 5.26441 5.29064 5.40042 5.45590 5.48306 5.53885 5.61514 5.62800 5.89894 6.04219 6.14289 6.56787 6.84462 7.24208 8.77782 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.003837 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.657363 B = 7295.175707 C = 8134.425637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.130 4.130 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.549 4.549 6 H 0.071 0.929 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.260 1.260 13 O -0.349 6.349 14 C 0.453 3.547 15 O -0.529 6.529 16 C 0.095 3.905 17 H 0.149 0.851 18 C -0.090 4.090 19 C -0.178 4.178 20 C -0.078 4.078 21 C -0.136 4.136 22 C -0.086 4.086 23 C -0.114 4.114 24 C -0.109 4.109 25 C 0.065 3.935 26 O -0.303 6.303 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.034 0.966 30 H 0.051 0.949 31 H 0.089 0.911 32 H 0.271 0.729 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.150 0.850 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.078 0.922 39 H 0.045 0.955 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.124 12.042 -15.703 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.089 0.911 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.184 1.184 13 O -0.265 6.265 14 C 0.296 3.704 15 O -0.419 6.419 16 C 0.037 3.963 17 H 0.166 0.834 18 C -0.127 4.127 19 C -0.179 4.179 20 C -0.096 4.096 21 C -0.154 4.154 22 C -0.104 4.104 23 C -0.115 4.115 24 C -0.166 4.166 25 C 0.021 3.979 26 O -0.218 6.218 27 H 0.083 0.917 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.152 0.848 35 H 0.168 0.832 36 H 0.181 0.819 37 H 0.181 0.819 38 H 0.097 0.903 39 H 0.064 0.936 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -8.453 11.804 -15.046 20.909 hybrid contribution 0.801 -0.508 0.991 1.371 sum -7.652 11.296 -14.056 19.589 Atomic orbital electron populations 1.21729 0.96526 1.00744 0.99885 1.21891 0.94207 0.97980 1.02748 1.20494 0.94849 0.89286 0.78162 0.97690 1.21317 0.90077 1.40170 1.07112 0.91106 1.25825 1.04340 0.93785 0.94301 1.70017 1.37560 1.37858 1.09849 0.85182 0.77494 0.77941 0.78813 1.19887 1.20139 1.18429 1.86437 1.34437 1.62662 1.42995 1.23504 0.80392 0.76770 0.89745 1.90636 1.55889 1.58442 1.36909 1.22767 0.83338 0.97018 0.93129 0.83355 1.21671 0.97277 0.90689 1.03021 1.20864 0.92930 0.99663 1.04430 1.20668 1.01256 0.91866 0.95763 1.21479 0.91439 1.01009 1.01441 1.21197 0.99248 0.94059 0.95897 1.19522 0.93748 0.96657 1.01587 1.20719 0.92069 1.02542 1.01247 1.19844 0.95805 0.87991 0.94306 1.86855 1.35433 1.35493 1.63983 0.91679 0.94850 0.94716 0.92981 0.89314 0.91990 0.90122 0.84821 0.83235 0.81891 0.81918 0.90313 0.93626 0.89060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.94 8.57 71.98 0.62 -5.32 16 2 C -0.13 -6.59 5.49 30.59 0.17 -6.42 16 3 C 0.22 12.29 2.25 29.85 0.07 12.35 16 4 H 0.01 0.33 7.16 -2.39 -0.02 0.31 16 5 C -0.55 -30.79 8.90 25.60 0.23 -30.56 16 6 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 7 C 0.02 0.95 5.29 84.66 0.45 1.40 16 8 N -0.92 -52.29 11.29 21.45 0.24 -52.05 16 9 Si 0.98 42.37 29.54 68.60 2.03 44.39 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 11 H -0.28 -11.51 7.11 99.48 0.71 -10.81 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 O -0.35 -16.61 9.81 -51.36 -0.50 -17.11 16 14 C 0.45 19.86 5.71 71.24 0.41 20.26 16 15 O -0.53 -27.02 13.72 28.18 0.39 -26.64 16 16 C 0.09 3.14 4.16 30.43 0.13 3.27 16 17 H 0.15 3.98 8.14 -2.39 -0.02 3.96 16 18 C -0.09 -2.49 6.64 30.73 0.20 -2.28 16 19 C -0.18 -4.60 6.27 -19.53 -0.12 -4.72 16 20 C -0.08 -1.48 10.03 22.18 0.22 -1.26 16 21 C -0.14 -2.08 10.07 22.31 0.22 -1.85 16 22 C -0.09 -1.44 9.66 22.21 0.21 -1.23 16 23 C -0.11 -2.69 5.90 -19.69 -0.12 -2.80 16 24 C -0.11 -2.21 9.98 71.23 0.71 -1.50 16 25 C 0.06 1.91 6.74 22.68 0.15 2.07 16 26 O -0.30 -10.86 10.25 -76.82 -0.79 -11.64 16 27 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.03 1.61 7.80 -2.39 -0.02 1.59 16 29 H 0.03 1.51 6.06 -2.39 -0.01 1.49 16 30 H 0.05 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.09 4.89 5.95 -2.39 -0.01 4.88 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.08 2.51 7.92 -2.39 -0.02 2.49 16 34 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 35 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.14 8.00 -2.38 -0.02 1.13 16 40 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 Total: -1.00 -70.43 333.54 5.95 -64.48 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.04 Total: 17.18 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: 3.55 Total: -18.61 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.24 Total: -52.05 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -0.90 Total: -55.40 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -70.43 5.95 -64.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835341815.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.963 kcal (2) G-P(sol) polarization free energy of solvation -70.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds