Wall clock time and date at job start Tue Mar 31 2020 06:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00176 * 2 1 4 4 H 1.48502 * 109.46734 * 270.00221 * 3 2 1 5 5 H 1.48502 * 109.46844 * 29.99806 * 3 2 1 6 6 H 1.48495 * 109.47212 * 149.99828 * 3 2 1 7 7 C 1.37880 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00374 * 173.77008 * 7 2 1 9 9 C 1.50698 * 119.99948 * 353.76835 * 7 2 1 10 10 O 1.45201 * 112.85265 * 62.52474 * 9 7 2 11 11 C 1.34734 * 116.99426 * 65.17438 * 10 9 7 12 12 O 1.21484 * 120.00333 * 357.71337 * 11 10 9 13 13 C 1.47582 * 119.99479 * 177.71216 * 11 10 9 14 14 C 1.41690 * 126.50017 * 180.02562 * 13 11 10 15 15 C 1.34684 * 105.33539 * 179.97438 * 14 13 11 16 16 N 1.35686 * 107.67810 * 359.94773 * 15 14 13 17 17 N 1.28267 * 109.72139 * 0.10326 * 16 15 14 18 18 C 1.46999 * 123.77582 * 179.80614 * 16 15 14 19 19 C 1.53139 * 108.98890 * 342.52388 * 18 16 15 20 20 C 1.53162 * 109.60113 * 51.05977 * 19 18 16 21 21 C 1.50806 * 127.52903 * 180.02562 * 15 14 13 22 22 C 1.53783 * 113.61651 * 193.72663 * 9 7 2 23 23 C 1.53951 * 87.02139 * 89.22920 * 22 9 7 24 24 C 1.53780 * 87.11251 * 25.36199 * 23 22 9 25 25 H 0.97000 * 120.00428 * 5.02690 * 1 2 3 26 26 H 1.08000 * 127.33196 * 359.94255 * 14 13 11 27 27 H 1.08999 * 109.56338 * 222.64884 * 18 16 15 28 28 H 1.08998 * 109.56814 * 102.40751 * 18 16 15 29 29 H 1.08999 * 109.45078 * 171.09625 * 19 18 16 30 30 H 1.08996 * 109.45505 * 291.01785 * 19 18 16 31 31 H 1.08997 * 109.53943 * 50.27365 * 20 19 18 32 32 H 1.09001 * 109.53587 * 170.53011 * 20 19 18 33 33 H 1.08998 * 109.71719 * 44.75576 * 21 15 14 34 34 H 1.08994 * 109.72029 * 284.10586 * 21 15 14 35 35 H 1.09001 * 113.61411 * 203.74823 * 22 9 7 36 36 H 1.09002 * 113.60995 * 334.64658 * 22 9 7 37 37 H 1.09007 * 113.53693 * 270.81171 * 23 22 9 38 38 H 1.09000 * 113.74323 * 139.94938 * 23 22 9 39 39 H 1.09001 * 113.61532 * 220.08450 * 24 23 22 40 40 H 1.09003 * 113.68951 * 89.19838 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0797 -1.1970 -0.1010 9 6 1.2577 -2.4952 0.1428 10 8 0.3336 -2.7375 -0.9507 11 6 0.8677 -2.9150 -2.1748 12 8 2.0692 -2.8274 -2.3319 13 6 -0.0069 -3.2158 -3.3249 14 6 0.4047 -3.4274 -4.6641 15 6 -0.7286 -3.6670 -5.3514 16 7 -1.7628 -3.6044 -4.4753 17 7 -1.3200 -3.3391 -3.3011 18 6 -3.1683 -3.8087 -4.8543 19 6 -3.3022 -3.6574 -6.3723 20 6 -2.2636 -4.5405 -7.0703 21 6 -0.8653 -3.9577 -6.8248 22 6 2.1657 -3.6953 0.4593 23 6 1.9604 -3.3558 1.9468 24 6 0.6332 -2.6982 1.5334 25 1 -0.4851 0.8368 -0.0736 26 1 1.4125 -3.4014 -5.0514 27 1 -3.7921 -3.0660 -4.3570 28 1 -3.4846 -4.8088 -4.5578 29 1 -4.3027 -3.9610 -6.6805 30 1 -3.1380 -2.6160 -6.6491 31 1 -2.3141 -5.5515 -6.6661 32 1 -2.4658 -4.5640 -8.1411 33 1 -0.1076 -4.6798 -7.1290 34 1 -0.7454 -3.0361 -7.3942 35 1 1.7387 -4.6549 0.1675 36 1 3.1932 -3.5671 0.1189 37 1 2.6940 -2.6506 2.3376 38 1 1.8342 -4.2315 2.5835 39 1 0.4253 -1.7662 2.0590 40 1 -0.2145 -3.3835 1.5355 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835399319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:01 Heat of formation + Delta-G solvation = 11.376824 kcal Electronic energy + Delta-G solvation = -23492.111902 eV Core-core repulsion = 20081.334845 eV Total energy + Delta-G solvation = -3410.777057 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.45052 -38.97788 -37.04308 -36.43626 -33.98645 -32.95304 -32.19617 -30.20556 -28.56554 -26.18295 -24.86268 -24.45428 -23.52741 -22.44276 -21.87482 -19.93407 -18.79611 -18.41822 -16.75180 -16.63278 -16.12088 -15.49590 -15.06950 -14.70433 -14.63519 -14.32437 -14.24941 -13.90643 -13.61409 -13.37459 -13.08319 -12.71756 -12.12960 -11.96538 -11.49577 -11.39236 -11.30937 -11.22709 -10.99276 -10.95854 -10.81805 -10.38806 -10.26001 -10.20555 -9.81023 -9.70931 -9.36467 -8.70383 -8.67126 -8.63318 -8.47426 -8.39078 -6.00319 -4.12797 2.11764 2.49493 2.64159 3.32947 3.38943 3.43382 4.05303 4.20714 4.31035 4.40064 4.43756 4.46202 4.67930 5.00764 5.10875 5.15299 5.28820 5.36315 5.41397 5.47868 5.57889 5.66304 5.81160 5.86909 5.86963 5.93927 6.03116 6.19005 6.29075 6.51216 6.58016 6.74350 6.84358 7.01174 7.06872 7.19949 7.38556 7.65171 7.87844 8.02261 8.33686 8.45477 8.90669 9.36278 9.57411 11.03633 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.020123 B = 0.004658 C = 0.004324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.138981 B = 6009.143251 C = 6473.289320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.515 4.515 8 H 0.068 0.932 9 C 0.238 3.762 10 O -0.327 6.327 11 C 0.549 3.451 12 O -0.505 6.505 13 C 0.015 3.985 14 C -0.178 4.178 15 C -0.002 4.002 16 N -0.289 5.289 17 N -0.232 5.232 18 C 0.123 3.877 19 C -0.136 4.136 20 C -0.126 4.126 21 C -0.048 4.048 22 C -0.159 4.159 23 C -0.131 4.131 24 C -0.107 4.107 25 H 0.262 0.738 26 H 0.160 0.840 27 H 0.099 0.901 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.051 0.949 39 H 0.074 0.926 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 -8.845 -12.687 17.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.086 0.914 9 C 0.204 3.796 10 O -0.241 6.241 11 C 0.390 3.610 12 O -0.392 6.392 13 C -0.144 4.144 14 C -0.205 4.205 15 C -0.125 4.125 16 N -0.080 5.080 17 N -0.068 5.068 18 C 0.003 3.997 19 C -0.174 4.174 20 C -0.164 4.164 21 C -0.087 4.087 22 C -0.197 4.197 23 C -0.168 4.168 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.178 0.822 27 H 0.118 0.882 28 H 0.108 0.892 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.099 -8.657 -11.867 16.774 hybrid contribution 1.063 1.026 -0.592 1.592 sum -7.036 -7.631 -12.458 16.215 Atomic orbital electron populations 1.70058 1.05824 1.26906 1.46592 1.25087 0.94834 0.99283 0.93856 0.86586 0.80081 0.83127 0.78311 1.20552 1.21068 1.19461 1.20942 0.93615 0.88721 1.51898 0.91350 1.21235 0.85285 0.92271 0.80768 1.86638 1.43383 1.78567 1.15504 1.19227 0.85157 0.73867 0.82710 1.90731 1.15184 1.47699 1.85623 1.21520 0.89545 1.09179 0.94205 1.21284 0.98994 1.08436 0.91829 1.21216 0.87889 1.08937 0.94449 1.45800 1.07529 1.50122 1.04521 1.73650 1.12836 1.15974 1.04298 1.22040 0.77434 1.03873 0.96367 1.21927 1.00876 1.01990 0.92588 1.21688 0.94023 0.99400 1.01244 1.20288 0.97899 1.01985 0.88501 1.23561 1.01264 0.98582 0.96302 1.22562 0.99232 0.99364 0.95686 1.22886 0.95057 0.99867 0.96652 0.92835 0.82227 0.88222 0.89208 0.88957 0.90406 0.91132 0.90325 0.89298 0.89750 0.92244 0.91743 0.90230 0.93043 0.90769 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.44 12.79 55.43 0.71 -24.73 16 2 C 0.08 2.17 5.30 -17.82 -0.09 2.07 16 3 Si 0.89 22.06 29.55 -169.99 -5.02 17.04 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.87 7.08 -34.44 -0.24 -15.11 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.24 6.40 0.47 -90.96 -0.04 6.36 16 10 O -0.33 -9.13 9.77 -40.58 -0.40 -9.52 16 11 C 0.55 14.50 7.53 34.54 0.26 14.76 16 12 O -0.51 -13.96 15.42 -19.25 -0.30 -14.26 16 13 C 0.01 0.34 7.17 -82.71 -0.59 -0.26 16 14 C -0.18 -3.26 10.75 -39.52 -0.42 -3.68 16 15 C 0.00 -0.03 6.57 -82.09 -0.54 -0.57 16 16 N -0.29 -4.60 3.74 -56.67 -0.21 -4.81 16 17 N -0.23 -4.88 12.03 33.44 0.40 -4.48 16 18 C 0.12 1.28 7.17 -3.70 -0.03 1.25 16 19 C -0.14 -0.96 5.91 -26.58 -0.16 -1.12 16 20 C -0.13 -0.87 5.98 -26.41 -0.16 -1.03 16 21 C -0.05 -0.45 6.28 -27.59 -0.17 -0.62 16 22 C -0.16 -3.73 6.57 -25.83 -0.17 -3.90 16 23 C -0.13 -2.76 7.81 -25.83 -0.20 -2.96 16 24 C -0.11 -2.58 7.28 -25.92 -0.19 -2.77 16 25 H 0.26 7.38 8.32 -40.82 -0.34 7.04 16 26 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 27 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.60 8.11 -51.93 -0.42 0.17 16 31 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.06 1.53 8.09 -51.93 -0.42 1.11 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.90 7.98 -51.93 -0.41 1.48 16 40 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 334.40 15.07 5.04 5.04 Total: -1.00 -35.32 334.40 -8.40 -43.72 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.87 Total: -0.41 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.75 Total: -7.59 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.90 Total: -34.02 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.69 Total: -23.78 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -35.32 -8.40 -43.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835399319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.097 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds