Wall clock time and date at job start Tue Mar 31 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.51839 * 2 1 4 4 C 1.53088 * 109.52333 * 239.81028 * 2 1 3 5 5 O 1.42896 * 109.41508 * 182.48256 * 4 2 1 6 6 C 1.42901 * 114.09829 * 61.16029 * 5 4 2 7 7 C 1.53092 * 109.41323 * 298.84115 * 6 5 4 8 8 C 1.53173 * 109.51983 * 120.12169 * 2 1 3 9 9 H 1.09003 * 109.54456 * 56.93582 * 8 2 1 10 10 O 1.45197 * 109.54807 * 296.75436 * 8 2 1 11 11 C 1.34699 * 117.00130 * 150.00162 * 10 8 2 12 12 O 1.21470 * 120.00252 * 0.02562 * 11 10 8 13 13 C 1.47771 * 120.00190 * 179.97438 * 11 10 8 14 14 C 1.39969 * 120.02763 * 359.96285 * 13 11 10 15 15 C 1.38318 * 120.35206 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41965 * 359.97438 * 15 14 13 17 17 C 1.40760 * 120.04860 * 0.02562 * 16 15 14 18 18 C 1.41445 * 120.17438 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99755 * 334.95823 * 18 17 16 20 20 C 1.39929 * 119.99896 * 154.95871 * 18 17 16 21 21 N 1.30833 * 120.00221 * 342.57934 * 20 18 17 22 22 Si 1.86800 * 120.00115 * 162.58217 * 20 18 17 23 23 H 1.48508 * 109.46950 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47187 * 119.99611 * 22 20 18 25 25 H 1.48497 * 109.47132 * 239.99916 * 22 20 18 26 26 C 1.39047 * 120.03193 * 179.97438 * 13 11 10 27 27 H 1.09004 * 109.47473 * 299.87339 * 1 2 3 28 28 H 1.08999 * 109.47210 * 59.88026 * 1 2 3 29 29 H 1.09007 * 109.47046 * 179.87711 * 1 2 3 30 30 H 1.09002 * 109.48232 * 302.46960 * 4 2 1 31 31 H 1.09002 * 109.47962 * 62.50171 * 4 2 1 32 32 H 1.09003 * 109.47869 * 58.82165 * 6 5 4 33 33 H 1.09000 * 109.48457 * 178.86203 * 6 5 4 34 34 H 1.08997 * 109.52209 * 297.70031 * 7 6 5 35 35 H 1.08999 * 109.52661 * 177.51411 * 7 6 5 36 36 H 1.08004 * 119.82370 * 0.03794 * 14 13 11 37 37 H 1.07999 * 119.78561 * 180.27649 * 15 14 13 38 38 H 1.08001 * 119.97616 * 180.02562 * 16 15 14 39 39 H 0.96993 * 119.99987 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.20604 * 359.96791 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7256 -1.2472 5 8 3.4694 -0.7749 -1.2158 6 6 4.0044 -1.4815 -0.0949 7 6 3.5716 -0.7863 1.1986 8 6 2.0418 -0.7245 1.2487 9 1 1.6355 -1.7356 1.2760 10 8 1.6236 -0.0008 2.4360 11 6 1.4173 -0.7251 3.5527 12 8 1.5826 -1.9284 3.5355 13 6 0.9908 -0.0558 4.7993 14 6 0.8019 1.3309 4.8204 15 6 0.4033 1.9644 5.9836 16 6 0.1872 1.2385 7.1342 17 6 0.3721 -0.1569 7.1325 18 6 0.1515 -0.9048 8.3126 19 1 0.2408 -0.4290 9.2780 20 6 -0.1824 -2.2611 8.2292 21 7 -0.6219 -2.7586 7.1017 22 14 -0.0008 -3.3616 9.7276 23 1 0.5123 -2.5625 10.8694 24 1 -1.3227 -3.9387 10.0811 25 1 0.9529 -4.4585 9.4235 26 6 0.7771 -0.8029 5.9523 27 1 -0.3634 0.5119 0.8911 28 1 -0.3633 0.5157 -0.8889 29 1 -0.3633 -1.0277 -0.0022 30 1 1.6432 -1.7399 -1.2667 31 1 1.7159 -0.1897 -2.1387 32 1 3.6316 -2.5058 -0.0993 33 1 5.0926 -1.4903 -0.1562 34 1 3.9780 0.2248 1.2222 35 1 3.9417 -1.3487 2.0559 36 1 0.9680 1.9094 3.9236 37 1 0.2559 3.0342 5.9884 38 1 -0.1243 1.7404 8.0384 39 1 -0.8529 -3.6988 7.0438 40 1 0.9214 -1.8732 5.9408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835778712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:12 Heat of formation + Delta-G solvation = -131.133383 kcal Electronic energy + Delta-G solvation = -23030.278297 eV Core-core repulsion = 19581.028783 eV Total energy + Delta-G solvation = -3449.249514 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.34440 -38.98294 -37.37261 -35.90098 -33.89883 -33.68805 -31.96615 -30.29488 -29.53820 -26.93987 -25.59273 -25.05661 -22.91141 -22.42094 -21.02810 -20.26635 -19.80664 -17.89740 -16.90480 -16.37815 -16.16414 -15.68637 -15.46992 -14.96354 -14.78907 -14.58440 -14.14287 -13.90957 -13.46343 -13.24411 -12.87582 -12.71423 -12.50279 -12.16647 -12.05067 -11.77336 -11.57282 -11.26043 -11.21548 -11.13109 -10.97904 -10.79269 -10.55934 -10.46599 -10.26074 -10.02447 -9.83304 -9.75649 -9.44290 -9.28273 -7.78198 -7.59084 -6.86256 -4.47537 1.94333 2.73888 3.04468 3.08515 3.10546 3.13311 3.56041 3.69357 3.87586 4.50955 4.52947 4.62456 4.69883 4.95177 5.04884 5.08400 5.25803 5.41385 5.45453 5.50432 5.50961 5.68242 5.71836 5.75889 5.88740 5.99961 6.07032 6.17410 6.21458 6.36702 6.61981 6.90015 6.92264 6.97378 6.98269 7.13444 7.27447 7.64543 7.71759 7.87246 8.06602 8.40833 8.52874 8.73351 8.75514 10.09256 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022884 B = 0.003900 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.282552 B = 7177.743865 C = 7780.967042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 H 0.090 0.910 4 C 0.069 3.931 5 O -0.383 6.383 6 C 0.066 3.934 7 C -0.173 4.173 8 C 0.091 3.909 9 H 0.083 0.917 10 O -0.346 6.346 11 C 0.511 3.489 12 O -0.519 6.519 13 C -0.116 4.116 14 C -0.193 4.193 15 C -0.104 4.104 16 C -0.201 4.201 17 C 0.096 3.904 18 C -0.460 4.460 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.788 5.788 22 Si 0.910 3.090 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.089 4.089 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.284 0.716 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 2.250 -11.900 12.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.141 4.141 3 H 0.109 0.891 4 C -0.008 4.008 5 O -0.301 6.301 6 C -0.011 4.011 7 C -0.211 4.211 8 C 0.036 3.964 9 H 0.101 0.899 10 O -0.263 6.263 11 C 0.359 3.641 12 O -0.408 6.408 13 C -0.117 4.117 14 C -0.213 4.213 15 C -0.122 4.122 16 C -0.221 4.221 17 C 0.093 3.907 18 C -0.489 4.489 19 H 0.101 0.899 20 C -0.145 4.145 21 N -0.412 5.412 22 Si 0.734 3.266 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.109 4.109 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.040 1.741 -12.181 12.951 hybrid contribution -0.191 -0.793 0.851 1.179 sum 3.849 0.947 -11.330 12.003 Atomic orbital electron populations 1.21749 0.93614 1.02322 1.02822 1.21906 0.97351 1.01517 0.93327 0.89148 1.22674 0.80892 0.99842 0.97359 1.87915 1.20297 1.76441 1.45481 1.22557 0.99377 0.94614 0.84519 1.22644 0.95779 1.03246 0.99457 1.22614 0.93974 0.96726 0.83133 0.89868 1.86663 1.79062 1.41627 1.18983 1.21910 0.72983 0.85510 0.83746 1.90744 1.49346 1.15806 1.84932 1.18841 1.08570 0.94098 0.90182 1.20565 1.10090 0.92732 0.97919 1.20513 1.00582 0.97730 0.93375 1.21198 1.08796 0.94811 0.97275 1.17548 0.89194 0.91235 0.92698 1.19606 1.41629 0.93814 0.93867 0.89888 1.25962 0.92225 0.98834 0.97520 1.69785 1.29192 1.15533 1.26740 0.86223 0.78855 0.79868 0.81617 1.18275 1.19869 1.19568 1.21655 0.98000 1.00378 0.90821 0.91152 0.92160 0.92596 0.92836 0.88133 0.92796 0.88269 0.89960 0.89992 0.87899 0.88523 0.88317 0.90481 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.09 37.16 0.34 -1.38 16 2 C -0.12 -1.49 2.65 -90.48 -0.24 -1.73 16 3 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 4 C 0.07 0.72 6.13 37.20 0.23 0.95 16 5 O -0.38 -4.59 10.76 -35.23 -0.38 -4.97 16 6 C 0.07 0.74 6.84 37.20 0.25 0.99 16 7 C -0.17 -2.34 5.78 -26.59 -0.15 -2.49 16 8 C 0.09 1.38 1.94 -26.55 -0.05 1.33 16 9 H 0.08 1.37 7.16 -51.93 -0.37 1.00 16 10 O -0.35 -6.46 8.60 -40.49 -0.35 -6.81 16 11 C 0.51 11.39 7.88 34.63 0.27 11.66 16 12 O -0.52 -12.50 15.59 -19.24 -0.30 -12.80 16 13 C -0.12 -2.77 5.87 -105.05 -0.62 -3.39 16 14 C -0.19 -4.24 9.62 -38.90 -0.37 -4.61 16 15 C -0.10 -2.22 10.01 -39.73 -0.40 -2.62 16 16 C -0.20 -4.71 9.78 -38.81 -0.38 -5.09 16 17 C 0.10 2.49 5.57 -106.87 -0.59 1.90 16 18 C -0.46 -11.89 9.05 -37.73 -0.34 -12.23 16 19 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 20 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 21 N -0.79 -20.52 10.97 55.55 0.61 -19.91 16 22 Si 0.91 18.45 29.59 -169.99 -5.03 13.42 16 23 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 24 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 26 C -0.09 -2.35 8.23 -38.43 -0.32 -2.66 16 27 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.10 2.03 7.59 -52.48 -0.40 1.63 16 37 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 40 H 0.14 3.79 5.76 -52.49 -0.30 3.49 16 LS Contribution 334.32 15.07 5.04 5.04 Total: -1.00 -28.56 334.32 -8.55 -37.11 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -5.68 Total: 6.56 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.46 Total: -17.63 kcal Atomic # 7 Polarization: -20.52 SS G_CDS: 0.61 Total: -19.91 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -1.03 Total: -24.58 kcal Atomic # 14 Polarization: 18.45 SS G_CDS: -5.03 Total: 13.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.56 -8.55 -37.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835778712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.027 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds