Wall clock time and date at job start Tue Mar 31 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.51839 * 2 1 4 4 C 1.53088 * 109.52333 * 239.81028 * 2 1 3 5 5 O 1.42896 * 109.41508 * 182.48256 * 4 2 1 6 6 C 1.42901 * 114.09829 * 61.16029 * 5 4 2 7 7 C 1.53092 * 109.41323 * 298.84115 * 6 5 4 8 8 C 1.53173 * 109.51983 * 120.12169 * 2 1 3 9 9 H 1.09003 * 109.54456 * 56.93582 * 8 2 1 10 10 O 1.45197 * 109.54807 * 296.75436 * 8 2 1 11 11 C 1.34699 * 117.00130 * 150.00162 * 10 8 2 12 12 O 1.21470 * 120.00252 * 0.02562 * 11 10 8 13 13 C 1.47771 * 120.00190 * 179.97438 * 11 10 8 14 14 C 1.39969 * 120.02763 * 359.96285 * 13 11 10 15 15 C 1.38318 * 120.35206 * 180.02562 * 14 13 11 16 16 C 1.37755 * 120.41965 * 359.97438 * 15 14 13 17 17 C 1.40760 * 120.04860 * 0.02562 * 16 15 14 18 18 C 1.41445 * 120.17438 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99755 * 334.95823 * 18 17 16 20 20 C 1.39929 * 119.99896 * 154.95871 * 18 17 16 21 21 N 1.30833 * 120.00221 * 342.57934 * 20 18 17 22 22 Si 1.86800 * 120.00115 * 162.58217 * 20 18 17 23 23 H 1.48508 * 109.46950 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47187 * 119.99611 * 22 20 18 25 25 H 1.48497 * 109.47132 * 239.99916 * 22 20 18 26 26 C 1.39047 * 120.03193 * 179.97438 * 13 11 10 27 27 H 1.09004 * 109.47473 * 299.87339 * 1 2 3 28 28 H 1.08999 * 109.47210 * 59.88026 * 1 2 3 29 29 H 1.09007 * 109.47046 * 179.87711 * 1 2 3 30 30 H 1.09002 * 109.48232 * 302.46960 * 4 2 1 31 31 H 1.09002 * 109.47962 * 62.50171 * 4 2 1 32 32 H 1.09003 * 109.47869 * 58.82165 * 6 5 4 33 33 H 1.09000 * 109.48457 * 178.86203 * 6 5 4 34 34 H 1.08997 * 109.52209 * 297.70031 * 7 6 5 35 35 H 1.08999 * 109.52661 * 177.51411 * 7 6 5 36 36 H 1.08004 * 119.82370 * 0.03794 * 14 13 11 37 37 H 1.07999 * 119.78561 * 180.27649 * 15 14 13 38 38 H 1.08001 * 119.97616 * 180.02562 * 16 15 14 39 39 H 0.96993 * 119.99987 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.20604 * 359.96791 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0416 -0.7256 -1.2472 5 8 3.4694 -0.7749 -1.2158 6 6 4.0044 -1.4815 -0.0949 7 6 3.5716 -0.7863 1.1986 8 6 2.0418 -0.7245 1.2487 9 1 1.6355 -1.7356 1.2760 10 8 1.6236 -0.0008 2.4360 11 6 1.4173 -0.7251 3.5527 12 8 1.5826 -1.9284 3.5355 13 6 0.9908 -0.0558 4.7993 14 6 0.8019 1.3309 4.8204 15 6 0.4033 1.9644 5.9836 16 6 0.1872 1.2385 7.1342 17 6 0.3721 -0.1569 7.1325 18 6 0.1515 -0.9048 8.3126 19 1 0.2408 -0.4290 9.2780 20 6 -0.1824 -2.2611 8.2292 21 7 -0.6219 -2.7586 7.1017 22 14 -0.0008 -3.3616 9.7276 23 1 0.5123 -2.5625 10.8694 24 1 -1.3227 -3.9387 10.0811 25 1 0.9529 -4.4585 9.4235 26 6 0.7771 -0.8029 5.9523 27 1 -0.3634 0.5119 0.8911 28 1 -0.3633 0.5157 -0.8889 29 1 -0.3633 -1.0277 -0.0022 30 1 1.6432 -1.7399 -1.2667 31 1 1.7159 -0.1897 -2.1387 32 1 3.6316 -2.5058 -0.0993 33 1 5.0926 -1.4903 -0.1562 34 1 3.9780 0.2248 1.2222 35 1 3.9417 -1.3487 2.0559 36 1 0.9680 1.9094 3.9236 37 1 0.2559 3.0342 5.9884 38 1 -0.1243 1.7404 8.0384 39 1 -0.8529 -3.6988 7.0438 40 1 0.9214 -1.8732 5.9408 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835778712.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:11 Heat of formation + Delta-G solvation = -145.675108 kcal Electronic energy + Delta-G solvation = -23030.908874 eV Core-core repulsion = 19581.028783 eV Total energy + Delta-G solvation = -3449.880091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.79861 -40.24889 -39.11585 -37.46968 -35.65445 -34.88806 -33.05204 -32.10488 -31.38444 -27.91448 -27.35314 -26.39925 -24.45023 -23.46465 -22.87701 -21.53328 -21.33982 -19.67962 -18.41096 -17.87290 -17.39661 -17.05703 -16.89343 -16.56877 -16.32953 -15.73457 -15.44017 -15.29939 -14.97073 -14.82338 -14.42048 -14.17777 -13.89830 -13.55901 -13.12187 -13.08623 -13.01462 -12.84336 -12.76787 -12.59275 -12.34139 -12.22419 -12.08496 -12.00649 -11.59005 -11.53875 -11.34879 -11.20171 -11.12136 -10.69442 -9.64526 -9.47013 -8.70932 -6.42544 0.10148 0.93728 1.36653 1.43410 1.52924 1.62151 1.77345 2.17693 2.69884 2.82623 3.43961 3.53557 3.60995 3.73072 3.76410 3.86565 4.12604 4.30292 4.34734 4.41681 4.42812 4.54562 4.59797 4.65273 4.72410 4.80345 4.83193 4.92190 4.95241 5.02390 5.07456 5.11000 5.23180 5.25739 5.37681 5.43477 5.79172 5.86668 5.98534 6.09708 6.20293 6.50584 6.78794 6.84487 6.86439 8.26980 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022884 B = 0.003900 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.282552 B = 7177.743865 C = 7780.967042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 H 0.094 0.906 4 C 0.070 3.930 5 O -0.390 6.390 6 C 0.070 3.930 7 C -0.171 4.171 8 C 0.080 3.920 9 H 0.066 0.934 10 O -0.340 6.340 11 C 0.515 3.485 12 O -0.546 6.546 13 C -0.130 4.130 14 C -0.181 4.181 15 C -0.098 4.098 16 C -0.203 4.203 17 C 0.067 3.933 18 C -0.494 4.494 19 H 0.088 0.912 20 C 0.031 3.969 21 N -0.828 5.828 22 Si 0.984 3.016 23 H -0.250 1.250 24 H -0.264 1.264 25 H -0.270 1.270 26 C -0.123 4.123 27 H 0.047 0.953 28 H 0.090 0.910 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.288 0.712 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 3.736 -13.095 14.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.134 4.134 3 H 0.112 0.888 4 C -0.007 4.007 5 O -0.308 6.308 6 C -0.006 4.006 7 C -0.209 4.209 8 C 0.025 3.975 9 H 0.085 0.915 10 O -0.257 6.257 11 C 0.363 3.637 12 O -0.438 6.438 13 C -0.131 4.131 14 C -0.200 4.200 15 C -0.116 4.116 16 C -0.223 4.223 17 C 0.065 3.935 18 C -0.523 4.523 19 H 0.106 0.894 20 C -0.184 4.184 21 N -0.454 5.454 22 Si 0.804 3.196 23 H -0.173 1.173 24 H -0.189 1.189 25 H -0.195 1.195 26 C -0.143 4.143 27 H 0.066 0.934 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.147 0.853 32 H 0.076 0.924 33 H 0.139 0.861 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.328 3.262 -13.397 14.452 hybrid contribution -0.269 -1.114 1.072 1.569 sum 4.059 2.148 -12.325 13.153 Atomic orbital electron populations 1.21746 0.93199 1.02253 1.03176 1.21949 0.97680 1.01461 0.92300 0.88798 1.22836 0.80190 1.00435 0.97233 1.87916 1.21095 1.76479 1.45321 1.22608 1.00705 0.94313 0.83013 1.22645 0.94320 1.03556 1.00358 1.23064 0.95397 0.96236 0.82819 0.91536 1.86619 1.78556 1.41455 1.19025 1.21700 0.72522 0.85083 0.84379 1.90721 1.50578 1.17002 1.85545 1.19103 1.08393 0.95263 0.90319 1.20943 1.08032 0.91828 0.99244 1.20963 0.98717 0.99830 0.92106 1.21517 1.07937 0.93946 0.98873 1.17902 0.89929 0.92803 0.92905 1.19899 1.43253 0.95048 0.94115 0.89397 1.26858 0.91186 0.99912 1.00458 1.69875 1.30476 1.16003 1.29013 0.85132 0.79020 0.77621 0.77828 1.17334 1.18871 1.19535 1.21460 1.01022 0.99356 0.92458 0.93430 0.89119 0.92951 0.92218 0.85257 0.92414 0.86072 0.89566 0.91737 0.85138 0.84096 0.86590 0.90172 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.09 71.98 0.65 -2.51 16 2 C -0.12 -2.59 2.65 -10.71 -0.03 -2.62 16 3 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 4 C 0.07 1.25 6.13 72.01 0.44 1.70 16 5 O -0.39 -8.31 10.76 -148.98 -1.60 -9.91 16 6 C 0.07 1.45 6.84 72.01 0.49 1.94 16 7 C -0.17 -4.51 5.78 30.69 0.18 -4.33 16 8 C 0.08 2.40 1.94 30.71 0.06 2.46 16 9 H 0.07 2.24 7.16 -2.39 -0.02 2.22 16 10 O -0.34 -12.69 8.60 -56.08 -0.48 -13.17 16 11 C 0.52 23.62 7.88 70.34 0.55 24.18 16 12 O -0.55 -27.68 15.59 19.93 0.31 -27.37 16 13 C -0.13 -6.34 5.87 -20.14 -0.12 -6.46 16 14 C -0.18 -7.66 9.62 22.71 0.22 -7.44 16 15 C -0.10 -3.98 10.01 22.17 0.22 -3.76 16 16 C -0.20 -9.38 9.78 22.77 0.22 -9.15 16 17 C 0.07 3.58 5.57 -21.32 -0.12 3.46 16 18 C -0.49 -26.32 9.05 23.47 0.21 -26.11 16 19 H 0.09 4.40 7.90 -2.91 -0.02 4.38 16 20 C 0.03 1.57 5.14 85.25 0.44 2.01 16 21 N -0.83 -45.27 10.97 21.82 0.24 -45.03 16 22 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 23 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 25 H -0.27 -10.50 7.11 99.48 0.71 -9.79 16 26 C -0.12 -6.80 8.23 23.02 0.19 -6.61 16 27 H 0.05 1.24 7.78 -2.39 -0.02 1.22 16 28 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.05 1.15 8.14 -2.38 -0.02 1.14 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.13 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.13 4.77 7.59 -2.91 -0.02 4.75 16 37 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.12 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.29 14.40 8.30 -92.71 -0.77 13.63 16 40 H 0.10 6.33 5.76 -2.91 -0.02 6.31 16 Total: -1.00 -64.65 334.32 5.14 -59.50 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 1.03 Total: 28.50 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 3.62 Total: -33.23 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.24 Total: -45.03 kcal Atomic # 8 Polarization: -48.68 SS G_CDS: -1.78 Total: -50.45 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -64.65 5.14 -59.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835778712.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.170 kcal (2) G-P(sol) polarization free energy of solvation -64.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds