Wall clock time and date at job start Tue Mar 31 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.52170 * 2 1 4 4 C 1.53084 * 109.52316 * 239.80947 * 2 1 3 5 5 O 1.42898 * 109.41698 * 297.70453 * 4 2 1 6 6 C 1.42906 * 114.09377 * 298.84083 * 5 4 2 7 7 C 1.53089 * 109.41667 * 61.15879 * 6 5 4 8 8 C 1.53175 * 109.52217 * 120.12073 * 2 1 3 9 9 H 1.09000 * 109.53945 * 182.87900 * 8 2 1 10 10 O 1.45192 * 109.54751 * 303.05853 * 8 2 1 11 11 C 1.34700 * 117.00309 * 209.99496 * 10 8 2 12 12 O 1.21469 * 120.00298 * 0.02562 * 11 10 8 13 13 C 1.47772 * 120.00398 * 179.97438 * 11 10 8 14 14 C 1.39976 * 120.02719 * 0.02562 * 13 11 10 15 15 C 1.38309 * 120.35230 * 179.97438 * 14 13 11 16 16 C 1.37764 * 120.41989 * 359.72409 * 15 14 13 17 17 C 1.40754 * 120.04725 * 0.55819 * 16 15 14 18 18 C 1.41441 * 120.17430 * 179.71816 * 17 16 15 19 19 H 1.08006 * 120.00078 * 205.49021 * 18 17 16 20 20 C 1.39936 * 119.99989 * 25.49679 * 18 17 16 21 21 N 1.30831 * 119.99896 * 200.02560 * 20 18 17 22 22 Si 1.86799 * 120.00176 * 20.02830 * 20 18 17 23 23 H 1.48492 * 109.46862 * 264.70083 * 22 20 18 24 24 H 1.48496 * 109.47224 * 144.70094 * 22 20 18 25 25 H 1.48500 * 109.46820 * 24.69884 * 22 20 18 26 26 C 1.39047 * 120.03255 * 180.02562 * 13 11 10 27 27 H 1.09001 * 109.46652 * 299.87689 * 1 2 3 28 28 H 1.09004 * 109.47061 * 59.87559 * 1 2 3 29 29 H 1.08996 * 109.46968 * 179.87986 * 1 2 3 30 30 H 1.09006 * 109.48139 * 57.68562 * 4 2 1 31 31 H 1.09000 * 109.48655 * 177.71492 * 4 2 1 32 32 H 1.09009 * 109.47979 * 181.13989 * 6 5 4 33 33 H 1.09002 * 109.48335 * 301.16156 * 6 5 4 34 34 H 1.08996 * 109.52578 * 182.48425 * 7 6 5 35 35 H 1.08997 * 109.52224 * 62.29291 * 7 6 5 36 36 H 1.08001 * 119.82045 * 0.02562 * 14 13 11 37 37 H 1.07997 * 119.79130 * 180.02562 * 15 14 13 38 38 H 1.07999 * 119.97710 * 180.29893 * 16 15 14 39 39 H 0.97004 * 119.99921 * 5.11381 * 21 20 18 40 40 H 1.07995 * 120.20820 * 0.04448 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0416 -0.7256 -1.2471 5 8 1.6099 -2.0874 -1.2151 6 6 2.0971 -2.8277 -0.0940 7 6 1.5878 -2.1866 1.1995 8 6 2.0419 -0.7245 1.2488 9 1 3.1307 -0.6802 1.2753 10 8 1.5008 -0.0875 2.4360 11 6 2.2529 -0.1354 3.5524 12 8 3.3316 -0.6935 3.5346 13 6 1.7664 0.4921 4.7987 14 6 0.5237 1.1360 4.8199 15 6 0.0615 1.7251 5.9827 16 6 0.8156 1.6803 7.1348 17 6 2.0704 1.0426 7.1314 18 6 2.8495 1.0003 8.3111 19 1 3.9232 0.9031 8.2460 20 6 2.2292 1.0841 9.5627 21 7 2.9232 1.4360 10.6145 22 14 0.4104 0.6934 9.7317 23 1 -0.3748 1.9517 9.6602 24 1 0.1657 0.0308 11.0379 25 1 -0.0055 -0.2129 8.6313 26 6 2.5425 0.4435 5.9513 27 1 -0.3633 0.5119 0.8911 28 1 -0.3633 0.5158 -0.8889 29 1 -0.3633 -1.0276 -0.0022 30 1 1.6454 -0.2395 -2.1387 31 1 3.1309 -0.6899 -1.2674 32 1 1.7408 -3.8561 -0.1549 33 1 3.1871 -2.8198 -0.0991 34 1 1.9941 -2.7233 2.0567 35 1 0.4990 -2.2307 1.2237 36 1 -0.0778 1.1722 3.9236 37 1 -0.8988 2.2191 5.9890 38 1 0.4456 2.1385 8.0401 39 1 3.8483 1.7104 10.5155 40 1 3.5023 -0.0515 5.9397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835778733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:16 Heat of formation + Delta-G solvation = -130.828095 kcal Electronic energy + Delta-G solvation = -22933.463823 eV Core-core repulsion = 19484.227547 eV Total energy + Delta-G solvation = -3449.236276 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58721 -39.23994 -37.67424 -36.11858 -33.93783 -33.68431 -31.88692 -30.63063 -30.12803 -27.10831 -25.59465 -24.82274 -23.44598 -23.16524 -20.64821 -20.45702 -19.40077 -18.46961 -17.18023 -16.79891 -16.32196 -16.00714 -15.58075 -15.45500 -15.04261 -14.44240 -14.17866 -13.93338 -13.74253 -13.43851 -13.05085 -12.78799 -12.63021 -12.16190 -12.12538 -12.07280 -11.71326 -11.52910 -11.45256 -11.32689 -11.01632 -10.57443 -10.56684 -10.44473 -10.18244 -10.07626 -9.92924 -9.75916 -9.49665 -9.23652 -8.01209 -7.89559 -7.44024 -4.67702 1.63880 2.50289 2.93060 3.10857 3.24973 3.30703 3.48202 3.61177 3.93939 4.38112 4.42414 4.50994 4.64975 4.81226 4.89326 4.94259 5.20401 5.22782 5.33301 5.37786 5.44565 5.50736 5.60148 5.66366 5.79945 5.86462 5.94218 6.02919 6.10856 6.24376 6.29865 6.56187 6.65046 6.73233 6.90651 6.94781 7.33268 7.42273 7.42517 7.56168 7.71240 8.22100 8.25094 8.33032 8.59951 9.87724 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034325 B = 0.003502 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.538562 B = 7993.264642 C = 8300.879948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.124 4.124 3 H 0.088 0.912 4 C 0.068 3.932 5 O -0.379 6.379 6 C 0.066 3.934 7 C -0.174 4.174 8 C 0.091 3.909 9 H 0.083 0.917 10 O -0.342 6.342 11 C 0.511 3.489 12 O -0.521 6.521 13 C -0.093 4.093 14 C -0.197 4.197 15 C -0.084 4.084 16 C -0.221 4.221 17 C 0.083 3.917 18 C -0.509 4.509 19 H 0.080 0.920 20 C 0.043 3.957 21 N -0.808 5.808 22 Si 1.070 2.930 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.260 1.260 26 C -0.143 4.143 27 H 0.066 0.934 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.053 0.947 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.107 0.893 39 H 0.289 0.711 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.467 -3.443 -17.511 18.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 H 0.106 0.894 4 C -0.009 4.009 5 O -0.297 6.297 6 C -0.011 4.011 7 C -0.212 4.212 8 C 0.036 3.964 9 H 0.101 0.899 10 O -0.259 6.259 11 C 0.359 3.641 12 O -0.411 6.411 13 C -0.095 4.095 14 C -0.216 4.216 15 C -0.103 4.103 16 C -0.240 4.240 17 C 0.080 3.920 18 C -0.537 4.537 19 H 0.098 0.902 20 C -0.177 4.177 21 N -0.429 5.429 22 Si 0.896 3.104 23 H -0.203 1.203 24 H -0.215 1.215 25 H -0.185 1.185 26 C -0.162 4.162 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.071 0.929 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.104 0.896 36 H 0.127 0.873 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.100 0.900 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.366 -3.839 -16.507 17.776 hybrid contribution 1.805 0.354 -0.771 1.995 sum -3.561 -3.485 -17.277 17.981 Atomic orbital electron populations 1.21731 0.93321 1.02650 1.02070 1.21909 0.98654 1.00436 0.93275 0.89415 1.22632 0.98549 0.82285 0.97393 1.87924 1.74090 1.22370 1.45359 1.22552 0.98271 0.95738 0.84521 1.22657 1.03513 0.95555 0.99500 1.22604 0.99008 0.91821 0.82977 0.89898 1.86670 1.48925 1.71369 1.18966 1.21876 0.82007 0.76369 0.83896 1.90742 1.22597 1.42742 1.85041 1.18772 0.97467 1.03587 0.89641 1.20583 0.96515 1.06310 0.98235 1.20575 0.98238 0.98513 0.92943 1.21239 0.98229 1.06725 0.97815 1.17657 0.91764 0.89624 0.92913 1.20690 0.96315 1.45253 0.91433 0.90167 1.27322 1.07941 0.90911 0.91571 1.70536 1.12137 1.27182 1.33047 0.83615 0.72201 0.78154 0.76407 1.20307 1.21514 1.18474 1.21234 1.00219 1.02856 0.91904 0.91519 0.92723 0.91883 0.88051 0.92909 0.88234 0.92834 0.90097 0.89595 0.87290 0.87807 0.87525 0.90015 0.86905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.62 37.16 0.32 -1.17 16 2 C -0.12 -1.34 2.99 -90.48 -0.27 -1.61 16 3 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 4 C 0.07 0.63 6.25 37.20 0.23 0.86 16 5 O -0.38 -4.08 10.19 -35.23 -0.36 -4.44 16 6 C 0.07 0.66 6.84 37.20 0.25 0.91 16 7 C -0.17 -2.12 5.42 -26.59 -0.14 -2.26 16 8 C 0.09 1.24 2.23 -26.55 -0.06 1.18 16 9 H 0.08 1.21 7.16 -51.93 -0.37 0.83 16 10 O -0.34 -5.76 8.34 -40.49 -0.34 -6.10 16 11 C 0.51 10.27 7.88 34.63 0.27 10.55 16 12 O -0.52 -11.29 15.59 -19.24 -0.30 -11.59 16 13 C -0.09 -2.04 5.87 -105.05 -0.62 -2.66 16 14 C -0.20 -3.99 9.62 -38.90 -0.37 -4.36 16 15 C -0.08 -1.73 10.01 -39.73 -0.40 -2.13 16 16 C -0.22 -5.10 7.20 -38.80 -0.28 -5.38 16 17 C 0.08 2.09 5.20 -106.87 -0.56 1.53 16 18 C -0.51 -13.43 9.43 -37.73 -0.36 -13.79 16 19 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 20 C 0.04 1.10 5.40 -17.34 -0.09 1.01 16 21 N -0.81 -21.18 13.65 55.55 0.76 -20.42 16 22 Si 1.07 23.44 24.83 -169.99 -4.22 19.22 16 23 H -0.28 -5.67 6.64 56.52 0.38 -5.30 16 24 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.26 -5.67 6.84 56.52 0.39 -5.28 16 26 C -0.14 -3.43 9.34 -38.43 -0.36 -3.79 16 27 H 0.07 0.78 7.61 -51.93 -0.40 0.39 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.69 6.14 -51.93 -0.32 0.37 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.09 1.03 6.62 -51.93 -0.34 0.69 16 36 H 0.11 1.95 7.59 -52.49 -0.40 1.55 16 37 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 38 H 0.11 2.41 4.26 -52.49 -0.22 2.18 16 39 H 0.29 7.36 8.73 -40.82 -0.36 7.00 16 40 H 0.11 2.73 7.64 -52.49 -0.40 2.33 16 LS Contribution 324.33 15.07 4.89 4.89 Total: -1.00 -27.90 324.33 -7.45 -35.35 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: -5.45 Total: 4.19 kcal Atomic # 6 Polarization: -18.67 SS G_CDS: -2.42 Total: -21.10 kcal Atomic # 7 Polarization: -21.18 SS G_CDS: 0.76 Total: -20.42 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -1.00 Total: -22.13 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.22 Total: 19.22 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -27.90 -7.45 -35.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835778733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.479 kcal (2) G-P(sol) polarization free energy of solvation -27.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds