Wall clock time and date at job start Tue Mar 31 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09006 * 109.52170 * 2 1 4 4 C 1.53084 * 109.52316 * 239.80947 * 2 1 3 5 5 O 1.42898 * 109.41698 * 297.70453 * 4 2 1 6 6 C 1.42906 * 114.09377 * 298.84083 * 5 4 2 7 7 C 1.53089 * 109.41667 * 61.15879 * 6 5 4 8 8 C 1.53175 * 109.52217 * 120.12073 * 2 1 3 9 9 H 1.09000 * 109.53945 * 182.87900 * 8 2 1 10 10 O 1.45192 * 109.54751 * 303.05853 * 8 2 1 11 11 C 1.34700 * 117.00309 * 209.99496 * 10 8 2 12 12 O 1.21469 * 120.00298 * 0.02562 * 11 10 8 13 13 C 1.47772 * 120.00398 * 179.97438 * 11 10 8 14 14 C 1.39976 * 120.02719 * 0.02562 * 13 11 10 15 15 C 1.38309 * 120.35230 * 179.97438 * 14 13 11 16 16 C 1.37764 * 120.41989 * 359.72409 * 15 14 13 17 17 C 1.40754 * 120.04725 * 0.55819 * 16 15 14 18 18 C 1.41441 * 120.17430 * 179.71816 * 17 16 15 19 19 H 1.08006 * 120.00078 * 205.49021 * 18 17 16 20 20 C 1.39936 * 119.99989 * 25.49679 * 18 17 16 21 21 N 1.30831 * 119.99896 * 200.02560 * 20 18 17 22 22 Si 1.86799 * 120.00176 * 20.02830 * 20 18 17 23 23 H 1.48492 * 109.46862 * 264.70083 * 22 20 18 24 24 H 1.48496 * 109.47224 * 144.70094 * 22 20 18 25 25 H 1.48500 * 109.46820 * 24.69884 * 22 20 18 26 26 C 1.39047 * 120.03255 * 180.02562 * 13 11 10 27 27 H 1.09001 * 109.46652 * 299.87689 * 1 2 3 28 28 H 1.09004 * 109.47061 * 59.87559 * 1 2 3 29 29 H 1.08996 * 109.46968 * 179.87986 * 1 2 3 30 30 H 1.09006 * 109.48139 * 57.68562 * 4 2 1 31 31 H 1.09000 * 109.48655 * 177.71492 * 4 2 1 32 32 H 1.09009 * 109.47979 * 181.13989 * 6 5 4 33 33 H 1.09002 * 109.48335 * 301.16156 * 6 5 4 34 34 H 1.08996 * 109.52578 * 182.48425 * 7 6 5 35 35 H 1.08997 * 109.52224 * 62.29291 * 7 6 5 36 36 H 1.08001 * 119.82045 * 0.02562 * 14 13 11 37 37 H 1.07997 * 119.79130 * 180.02562 * 15 14 13 38 38 H 1.07999 * 119.97710 * 180.29893 * 16 15 14 39 39 H 0.97004 * 119.99921 * 5.11381 * 21 20 18 40 40 H 1.07995 * 120.20820 * 0.04448 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0416 -0.7256 -1.2471 5 8 1.6099 -2.0874 -1.2151 6 6 2.0971 -2.8277 -0.0940 7 6 1.5878 -2.1866 1.1995 8 6 2.0419 -0.7245 1.2488 9 1 3.1307 -0.6802 1.2753 10 8 1.5008 -0.0875 2.4360 11 6 2.2529 -0.1354 3.5524 12 8 3.3316 -0.6935 3.5346 13 6 1.7664 0.4921 4.7987 14 6 0.5237 1.1360 4.8199 15 6 0.0615 1.7251 5.9827 16 6 0.8156 1.6803 7.1348 17 6 2.0704 1.0426 7.1314 18 6 2.8495 1.0003 8.3111 19 1 3.9232 0.9031 8.2460 20 6 2.2292 1.0841 9.5627 21 7 2.9232 1.4360 10.6145 22 14 0.4104 0.6934 9.7317 23 1 -0.3748 1.9517 9.6602 24 1 0.1657 0.0308 11.0379 25 1 -0.0055 -0.2129 8.6313 26 6 2.5425 0.4435 5.9513 27 1 -0.3633 0.5119 0.8911 28 1 -0.3633 0.5158 -0.8889 29 1 -0.3633 -1.0276 -0.0022 30 1 1.6454 -0.2395 -2.1387 31 1 3.1309 -0.6899 -1.2674 32 1 1.7408 -3.8561 -0.1549 33 1 3.1871 -2.8198 -0.0991 34 1 1.9941 -2.7233 2.0567 35 1 0.4990 -2.2307 1.2237 36 1 -0.0778 1.1722 3.9236 37 1 -0.8988 2.2191 5.9890 38 1 0.4456 2.1385 8.0401 39 1 3.8483 1.7104 10.5155 40 1 3.5023 -0.0515 5.9397 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835778733.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:16 Heat of formation + Delta-G solvation = -146.014337 kcal Electronic energy + Delta-G solvation = -22934.122348 eV Core-core repulsion = 19484.227547 eV Total energy + Delta-G solvation = -3449.894801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89469 -40.40803 -39.35920 -37.53500 -35.77262 -34.71439 -32.85572 -32.37372 -31.88291 -27.96542 -27.07787 -26.36673 -24.74059 -24.21552 -22.43640 -22.07333 -20.39172 -20.23558 -18.58120 -18.19212 -17.50061 -17.29252 -16.85062 -16.73533 -16.12645 -16.01960 -15.63717 -15.34554 -14.97808 -14.83029 -14.51767 -14.26184 -13.93088 -13.89049 -13.43750 -13.09851 -13.03401 -12.95196 -12.58572 -12.36609 -12.34085 -12.22556 -12.03824 -11.75907 -11.68860 -11.40456 -11.33473 -11.18759 -11.02732 -10.65003 -9.76980 -9.75289 -9.40951 -6.67198 -0.09764 0.71360 1.36041 1.52283 1.54559 1.60601 1.78207 2.17595 2.55967 2.85437 3.34657 3.47956 3.53354 3.66331 3.81637 3.85383 4.11439 4.18742 4.29268 4.36873 4.38197 4.47659 4.55577 4.62290 4.69390 4.73343 4.81261 4.82947 4.86514 4.89828 5.07768 5.14534 5.16886 5.29821 5.40201 5.42460 5.58257 5.62960 5.70583 5.91027 6.13624 6.26937 6.42928 6.69209 6.70902 7.90860 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034325 B = 0.003502 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.538562 B = 7993.264642 C = 8300.879948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.120 4.120 3 H 0.094 0.906 4 C 0.067 3.933 5 O -0.387 6.387 6 C 0.069 3.931 7 C -0.172 4.172 8 C 0.081 3.919 9 H 0.070 0.930 10 O -0.335 6.335 11 C 0.516 3.484 12 O -0.544 6.544 13 C -0.103 4.103 14 C -0.168 4.168 15 C -0.081 4.081 16 C -0.221 4.221 17 C 0.067 3.933 18 C -0.549 4.549 19 H 0.045 0.955 20 C 0.012 3.988 21 N -0.835 5.835 22 Si 1.100 2.900 23 H -0.246 1.246 24 H -0.280 1.280 25 H -0.259 1.259 26 C -0.169 4.169 27 H 0.053 0.947 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.127 0.873 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.145 0.855 37 H 0.153 0.847 38 H 0.115 0.885 39 H 0.279 0.721 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.740 -3.033 -20.438 22.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.139 4.139 3 H 0.112 0.888 4 C -0.009 4.009 5 O -0.305 6.305 6 C -0.007 4.007 7 C -0.209 4.209 8 C 0.026 3.974 9 H 0.088 0.912 10 O -0.251 6.251 11 C 0.364 3.636 12 O -0.436 6.436 13 C -0.104 4.104 14 C -0.187 4.187 15 C -0.098 4.098 16 C -0.240 4.240 17 C 0.064 3.936 18 C -0.578 4.578 19 H 0.063 0.937 20 C -0.202 4.202 21 N -0.458 5.458 22 Si 0.920 3.080 23 H -0.171 1.171 24 H -0.207 1.207 25 H -0.183 1.183 26 C -0.189 4.189 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.077 0.923 30 H 0.144 0.856 31 H 0.078 0.922 32 H 0.136 0.864 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -8.636 -3.415 -19.462 21.564 hybrid contribution 2.794 0.216 -0.166 2.807 sum -5.842 -3.199 -19.627 20.727 Atomic orbital electron populations 1.21717 0.92822 1.02493 1.02494 1.21975 0.99007 1.00650 0.92229 0.88754 1.22800 0.99211 0.81572 0.97336 1.87923 1.74298 1.23054 1.45235 1.22596 0.98542 0.96399 0.83197 1.22648 1.03583 0.94480 1.00231 1.23019 0.98540 0.93173 0.82623 0.91169 1.86630 1.48218 1.71323 1.18929 1.21581 0.81762 0.75872 0.84414 1.90735 1.23695 1.43669 1.85549 1.18995 0.97962 1.03679 0.89751 1.21092 0.95224 1.02934 0.99489 1.21089 0.99634 0.97609 0.91505 1.21497 0.97298 1.05785 0.99421 1.17779 0.92951 0.90311 0.92527 1.20626 0.95007 1.49015 0.93181 0.93708 1.28460 1.10998 0.89899 0.90836 1.70603 1.11961 1.29787 1.33438 0.83300 0.68659 0.79332 0.76721 1.17082 1.20710 1.18327 1.21156 1.00332 1.04253 0.93154 0.92741 0.90651 0.92320 0.85563 0.92163 0.86386 0.92421 0.91768 0.89322 0.83722 0.82951 0.86724 0.91053 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.62 71.98 0.62 -1.84 16 2 C -0.12 -2.25 2.99 -10.71 -0.03 -2.28 16 3 H 0.09 1.66 8.14 -2.38 -0.02 1.65 16 4 C 0.07 1.02 6.25 72.01 0.45 1.47 16 5 O -0.39 -7.16 10.19 -148.98 -1.52 -8.68 16 6 C 0.07 1.24 6.84 72.01 0.49 1.73 16 7 C -0.17 -3.91 5.42 30.68 0.17 -3.74 16 8 C 0.08 2.08 2.23 30.71 0.07 2.15 16 9 H 0.07 2.00 7.16 -2.39 -0.02 1.98 16 10 O -0.33 -10.62 8.34 -56.09 -0.47 -11.09 16 11 C 0.52 20.41 7.88 70.34 0.55 20.97 16 12 O -0.54 -24.01 15.59 19.94 0.31 -23.70 16 13 C -0.10 -4.38 5.87 -20.14 -0.12 -4.50 16 14 C -0.17 -6.16 9.62 22.71 0.22 -5.94 16 15 C -0.08 -2.94 10.01 22.17 0.22 -2.72 16 16 C -0.22 -9.76 7.20 22.77 0.16 -9.60 16 17 C 0.07 3.42 5.20 -21.32 -0.11 3.30 16 18 C -0.55 -30.75 9.43 23.47 0.22 -30.53 16 19 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 20 C 0.01 0.66 5.40 85.25 0.46 1.12 16 21 N -0.84 -45.80 13.65 21.82 0.30 -45.51 16 22 Si 1.10 46.44 24.83 68.60 1.70 48.14 16 23 H -0.25 -9.14 6.64 99.48 0.66 -8.48 16 24 H -0.28 -11.42 7.11 99.48 0.71 -10.71 16 25 H -0.26 -10.75 6.84 99.48 0.68 -10.07 16 26 C -0.17 -8.39 9.34 23.02 0.21 -8.17 16 27 H 0.05 1.10 7.61 -2.39 -0.02 1.08 16 28 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.10 6.14 -2.39 -0.01 1.09 16 30 H 0.13 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.12 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.09 1.96 6.62 -2.39 -0.02 1.95 16 36 H 0.15 4.34 7.59 -2.91 -0.02 4.32 16 37 H 0.15 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.12 4.87 4.26 -2.91 -0.01 4.86 16 39 H 0.28 15.26 8.73 -92.71 -0.81 14.45 16 40 H 0.09 4.81 7.64 -2.91 -0.02 4.78 16 Total: -1.00 -63.15 324.33 4.85 -58.30 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: 0.93 Total: 21.13 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 3.59 Total: -38.60 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.30 Total: -45.51 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -1.67 Total: -43.47 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 1.70 Total: 48.14 kcal Total: -63.15 4.85 -58.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835778733.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.716 kcal (2) G-P(sol) polarization free energy of solvation -63.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds