Wall clock time and date at job start Tue Mar 31 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.57071 * 2 1 4 4 C 1.53092 * 109.52420 * 120.15933 * 2 1 3 5 5 O 1.42897 * 109.41348 * 62.29829 * 4 2 1 6 6 C 1.42905 * 114.10239 * 61.15767 * 5 4 2 7 7 C 1.53088 * 109.41181 * 298.84199 * 6 5 4 8 8 C 1.53179 * 109.52295 * 239.84718 * 2 1 3 9 9 H 1.08993 * 109.61865 * 177.16375 * 8 2 1 10 10 O 1.45203 * 109.54539 * 56.93663 * 8 2 1 11 11 C 1.34704 * 116.99890 * 150.44302 * 10 8 2 12 12 O 1.21465 * 120.00142 * 0.02562 * 11 10 8 13 13 C 1.47767 * 119.99987 * 179.97438 * 11 10 8 14 14 C 1.39972 * 120.02977 * 359.97438 * 13 11 10 15 15 C 1.38316 * 120.35258 * 179.97438 * 14 13 11 16 16 C 1.37761 * 120.41728 * 359.75396 * 15 14 13 17 17 C 1.40752 * 120.05080 * 0.52142 * 16 15 14 18 18 C 1.41440 * 120.17466 * 179.73930 * 17 16 15 19 19 H 1.07996 * 120.00277 * 24.77012 * 18 17 16 20 20 C 1.39939 * 119.99618 * 205.04759 * 18 17 16 21 21 N 1.30823 * 120.00388 * 16.91446 * 20 18 17 22 22 Si 1.86798 * 119.99771 * 196.91047 * 20 18 17 23 23 H 1.48499 * 109.47317 * 59.99971 * 22 20 18 24 24 H 1.48502 * 109.46977 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47174 * 299.99904 * 22 20 18 26 26 C 1.39049 * 120.03130 * 180.02562 * 13 11 10 27 27 H 1.09003 * 109.46743 * 180.15672 * 1 2 3 28 28 H 1.08994 * 109.47197 * 300.15338 * 1 2 3 29 29 H 1.08999 * 109.47146 * 60.15965 * 1 2 3 30 30 H 1.08999 * 109.47780 * 302.31760 * 4 2 1 31 31 H 1.08994 * 109.48575 * 182.28605 * 4 2 1 32 32 H 1.08999 * 109.48313 * 178.85980 * 6 5 4 33 33 H 1.08996 * 109.48565 * 58.82667 * 6 5 4 34 34 H 1.08998 * 109.52768 * 297.69502 * 7 6 5 35 35 H 1.09004 * 109.57276 * 177.54369 * 7 6 5 36 36 H 1.07997 * 119.82472 * 0.02562 * 14 13 11 37 37 H 1.08002 * 119.78738 * 180.02562 * 15 14 13 38 38 H 1.08002 * 119.97134 * 180.25993 * 16 15 14 39 39 H 0.96998 * 120.00699 * 179.97438 * 21 20 18 40 40 H 1.07992 * 120.20567 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7249 1.2476 5 8 1.6099 -2.0867 1.2162 6 6 2.0971 -2.8277 0.0956 7 6 1.5877 -2.1873 -1.1982 8 6 2.0419 -0.7252 -1.2484 9 1 3.1307 -0.6824 -1.2758 10 8 1.5007 -0.0889 -2.4360 11 6 2.2488 -0.1452 -3.5548 12 8 3.3236 -0.7108 -3.5389 13 6 1.7614 0.4800 -4.8018 14 6 0.5222 1.1305 -4.8213 15 6 0.0597 1.7185 -5.9847 16 6 0.8149 1.6753 -7.1360 17 6 2.0610 1.0207 -7.1374 18 6 2.8361 0.9700 -8.3194 19 1 2.7092 1.7249 -9.0812 20 6 3.7633 -0.0617 -8.5043 21 7 3.6928 -1.1436 -7.7722 22 14 5.1017 0.1060 -9.7966 23 1 5.9410 1.2918 -9.4891 24 1 5.9480 -1.1143 -9.7939 25 1 4.4796 0.2733 -11.1347 26 6 2.5328 0.4218 -5.9572 27 1 -0.3633 -1.0277 0.0028 28 1 -0.3633 0.5162 0.8885 29 1 -0.3633 0.5113 -0.8914 30 1 1.6454 -0.2384 2.1388 31 1 3.1309 -0.6893 1.2678 32 1 1.7408 -3.8560 0.1570 33 1 3.1870 -2.8197 0.1005 34 1 0.4989 -2.2315 -1.2225 35 1 1.9932 -2.7243 -2.0558 36 1 -0.0757 1.1743 -3.9230 37 1 -0.8977 2.2185 -5.9894 38 1 0.4487 2.1405 -8.0393 39 1 4.3353 -1.8589 -7.9006 40 1 3.4894 -0.0794 -5.9471 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835778736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:18 Heat of formation + Delta-G solvation = -142.858323 kcal Electronic energy + Delta-G solvation = -23077.886421 eV Core-core repulsion = 19628.128475 eV Total energy + Delta-G solvation = -3449.757946 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.82096 -40.34165 -39.11685 -37.44731 -35.64828 -34.69112 -32.81975 -32.10285 -31.37998 -27.96519 -27.35692 -26.40304 -24.47714 -24.17195 -22.87273 -21.53490 -20.36015 -19.68689 -18.33511 -17.96947 -17.37733 -17.17380 -16.72781 -16.61977 -16.42773 -15.99534 -15.44625 -15.16442 -14.95104 -14.81042 -14.40100 -14.12528 -13.89594 -13.57190 -13.11245 -13.01004 -12.95002 -12.83680 -12.61090 -12.56020 -12.34005 -12.23375 -12.07379 -12.02577 -11.59525 -11.51490 -11.25944 -11.17575 -11.10491 -10.64822 -9.64128 -9.46596 -8.70094 -6.42435 0.10631 0.95063 1.36501 1.45702 1.49989 1.63176 1.78094 2.17830 2.70564 2.84789 3.49062 3.53507 3.61396 3.76124 3.81553 3.85725 4.10948 4.31664 4.36971 4.43518 4.47226 4.60163 4.62267 4.68987 4.73347 4.79268 4.83733 4.92024 5.02865 5.07214 5.10707 5.16504 5.25742 5.33751 5.41210 5.43441 5.79483 5.87007 5.98734 6.12771 6.20710 6.50628 6.79234 6.84709 6.86829 8.27283 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.003908 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.628469 B = 7162.378809 C = 8006.941555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.119 4.119 3 H 0.094 0.906 4 C 0.068 3.932 5 O -0.385 6.385 6 C 0.071 3.929 7 C -0.172 4.172 8 C 0.081 3.919 9 H 0.068 0.932 10 O -0.338 6.338 11 C 0.514 3.486 12 O -0.547 6.547 13 C -0.130 4.130 14 C -0.181 4.181 15 C -0.099 4.099 16 C -0.204 4.204 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.088 0.912 20 C 0.031 3.969 21 N -0.828 5.828 22 Si 0.984 3.016 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.123 4.123 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.129 0.871 31 H 0.060 0.940 32 H 0.119 0.881 33 H 0.058 0.942 34 H 0.086 0.914 35 H 0.059 0.941 36 H 0.131 0.869 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.288 0.712 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.812 0.306 14.126 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.138 4.138 3 H 0.113 0.887 4 C -0.009 4.009 5 O -0.304 6.304 6 C -0.005 4.005 7 C -0.210 4.210 8 C 0.026 3.974 9 H 0.086 0.914 10 O -0.255 6.255 11 C 0.362 3.638 12 O -0.439 6.439 13 C -0.131 4.131 14 C -0.200 4.200 15 C -0.116 4.116 16 C -0.223 4.223 17 C 0.065 3.935 18 C -0.525 4.525 19 H 0.106 0.894 20 C -0.184 4.184 21 N -0.454 5.454 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.197 1.197 25 H -0.176 1.176 26 C -0.143 4.143 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.070 0.930 30 H 0.147 0.853 31 H 0.079 0.921 32 H 0.137 0.863 33 H 0.076 0.924 34 H 0.105 0.895 35 H 0.078 0.922 36 H 0.149 0.851 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.098 0.902 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.529 -0.193 14.352 14.781 hybrid contribution 1.119 -0.224 -1.115 1.596 sum -2.410 -0.417 13.237 13.461 Atomic orbital electron populations 1.21706 0.92872 1.02436 1.02428 1.21973 0.98962 1.00644 0.92199 0.88745 1.22808 0.99235 0.81537 0.97272 1.87913 1.74313 1.23053 1.45111 1.22572 0.98521 0.96362 0.83094 1.22645 1.03425 0.94700 1.00205 1.22994 0.98411 0.93148 0.82856 0.91431 1.86636 1.48654 1.71373 1.18831 1.21720 0.81695 0.75970 0.84404 1.90720 1.24065 1.43512 1.85582 1.19105 0.98694 1.05116 0.90178 1.20943 0.95793 1.03924 0.99343 1.20964 0.99623 0.98971 0.92077 1.21513 0.94863 1.07237 0.98708 1.17894 0.92043 0.91041 0.92555 1.19862 1.18938 1.10241 1.03448 0.89365 1.26858 0.99474 0.93163 0.98915 1.69861 1.33236 1.05053 1.37225 0.85215 0.77254 0.78787 0.78305 1.18405 1.19706 1.17587 1.21465 0.99495 1.02250 0.91081 0.92397 0.90402 0.93032 0.85335 0.92133 0.86346 0.92416 0.89504 0.92249 0.85090 0.84096 0.86605 0.90167 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 8.62 71.98 0.62 -2.24 16 2 C -0.12 -2.61 2.99 -10.70 -0.03 -2.64 16 3 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 4 C 0.07 1.19 6.25 72.01 0.45 1.64 16 5 O -0.39 -8.09 10.18 -148.98 -1.52 -9.60 16 6 C 0.07 1.50 6.84 72.01 0.49 1.99 16 7 C -0.17 -4.65 5.42 30.68 0.17 -4.49 16 8 C 0.08 2.41 2.22 30.72 0.07 2.48 16 9 H 0.07 2.22 7.17 -2.39 -0.02 2.20 16 10 O -0.34 -12.53 8.34 -56.14 -0.47 -13.00 16 11 C 0.51 23.53 7.87 70.34 0.55 24.09 16 12 O -0.55 -27.67 15.60 19.95 0.31 -27.36 16 13 C -0.13 -6.34 5.87 -20.14 -0.12 -6.46 16 14 C -0.18 -7.63 9.62 22.71 0.22 -7.41 16 15 C -0.10 -3.98 10.01 22.18 0.22 -3.76 16 16 C -0.20 -9.40 9.78 22.77 0.22 -9.18 16 17 C 0.07 3.59 5.57 -21.32 -0.12 3.47 16 18 C -0.50 -26.43 9.05 23.47 0.21 -26.22 16 19 H 0.09 4.39 7.90 -2.91 -0.02 4.37 16 20 C 0.03 1.58 5.15 85.26 0.44 2.02 16 21 N -0.83 -45.34 10.95 21.82 0.24 -45.10 16 22 Si 0.98 38.68 29.59 68.60 2.03 40.71 16 23 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 24 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 25 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 26 C -0.12 -6.80 8.23 23.02 0.19 -6.61 16 27 H 0.06 1.26 6.14 -2.39 -0.01 1.25 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.22 7.61 -2.39 -0.02 1.20 16 30 H 0.13 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.09 2.29 6.63 -2.39 -0.02 2.27 16 35 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.13 4.76 7.59 -2.91 -0.02 4.74 16 37 H 0.14 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.12 4.84 8.06 -2.91 -0.02 4.82 16 39 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 40 H 0.10 6.34 5.76 -2.91 -0.02 6.32 16 Total: -1.00 -64.40 329.69 5.22 -59.17 By element: Atomic # 1 Polarization: 27.45 SS G_CDS: 1.04 Total: 28.50 kcal Atomic # 6 Polarization: -36.90 SS G_CDS: 3.59 Total: -33.31 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 0.24 Total: -45.10 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -1.67 Total: -49.96 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -64.40 5.22 -59.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835778736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.686 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds