Wall clock time and date at job start Tue Mar 31 2020 06:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99831 * 2 1 4 4 C 1.53002 * 112.84812 * 62.98463 * 3 2 1 5 5 O 1.45195 * 109.47341 * 47.84674 * 4 3 2 6 6 C 1.34808 * 116.99969 * 180.02562 * 5 4 3 7 7 O 1.21535 * 119.99688 * 359.97438 * 6 5 4 8 8 C 1.47279 * 120.00229 * 179.97438 * 6 5 4 9 9 C 1.39299 * 120.28805 * 354.16910 * 8 6 5 10 10 C 1.38196 * 120.08718 * 180.29918 * 9 8 6 11 11 C 1.38839 * 120.68322 * 359.43754 * 10 9 8 12 12 C 1.37597 * 120.58241 * 0.56413 * 11 10 9 13 13 C 1.40711 * 119.88844 * 359.72123 * 12 11 10 14 14 C 1.40857 * 120.33530 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99949 * 141.39977 * 14 13 12 16 16 C 1.40293 * 119.99944 * 321.39896 * 14 13 12 17 17 N 1.30618 * 120.00106 * 350.71697 * 16 14 13 18 18 Si 1.86804 * 120.00100 * 170.71050 * 16 14 13 19 19 H 1.48497 * 109.46839 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46846 * 120.00039 * 18 16 14 21 21 H 1.48500 * 109.47401 * 240.00099 * 18 16 14 22 22 C 1.53779 * 113.68783 * 194.25190 * 3 2 1 23 23 C 1.53785 * 87.08103 * 89.12788 * 22 3 2 24 24 C 1.53777 * 87.08018 * 25.43051 * 23 22 3 25 25 H 1.09005 * 109.46987 * 175.28312 * 1 2 3 26 26 H 1.08995 * 109.47587 * 295.28532 * 1 2 3 27 27 H 1.08997 * 109.46953 * 55.29250 * 1 2 3 28 28 H 1.09005 * 109.46737 * 287.84342 * 4 3 2 29 29 H 1.09001 * 109.46570 * 167.84971 * 4 3 2 30 30 H 1.07999 * 119.95396 * 0.02562 * 9 8 6 31 31 H 1.08004 * 119.65848 * 179.72473 * 10 9 8 32 32 H 1.08002 * 119.71207 * 180.28044 * 11 10 9 33 33 H 1.08001 * 120.06237 * 179.74040 * 12 11 10 34 34 H 0.97000 * 120.00107 * 180.02562 * 17 16 14 35 35 H 1.09005 * 113.61096 * 203.67149 * 22 3 2 36 36 H 1.09000 * 113.61640 * 334.57257 * 22 3 2 37 37 H 1.08999 * 113.60891 * 270.88007 * 23 22 3 38 38 H 1.08999 * 113.68618 * 139.98874 * 23 22 3 39 39 H 1.09001 * 113.61012 * 220.02138 * 24 23 22 40 40 H 1.09000 * 113.61698 * 89.11599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6668 2.1087 1.2561 5 8 1.8917 1.2876 2.4323 6 6 1.6342 1.8503 3.6299 7 8 1.2331 2.9960 3.6893 8 6 1.8389 1.0767 4.8664 9 6 2.1812 -0.2720 4.8027 10 6 2.3662 -0.9955 5.9655 11 6 2.2260 -0.3896 7.2068 12 6 1.8885 0.9410 7.3022 13 6 1.6887 1.6992 6.1338 14 6 1.3435 3.0620 6.2205 15 1 1.7613 3.7705 5.5205 16 6 0.4570 3.4992 7.2161 17 7 -0.1877 2.6278 7.9449 18 14 0.1988 5.3274 7.4996 19 1 1.0397 6.0992 6.5497 20 1 -1.2307 5.6650 7.2815 21 1 0.5817 5.6713 8.8926 22 6 3.5084 1.3148 -0.3467 23 6 3.0863 1.4448 -1.8198 24 6 1.7830 2.0809 -1.3084 25 1 -0.3633 -1.0242 -0.0845 26 1 -0.3634 0.4389 0.9291 27 1 -0.3633 0.5851 -0.8448 28 1 0.6202 2.4113 1.2189 29 1 2.2997 2.9948 1.3050 30 1 2.2978 -0.7541 3.8433 31 1 2.6271 -2.0420 5.9081 32 1 2.3786 -0.9687 8.1055 33 1 1.7776 1.4028 8.2722 34 1 -0.8009 2.9301 8.6331 35 1 4.0392 2.1874 0.0340 36 1 4.0152 0.3771 -0.1187 37 1 2.9385 0.4865 -2.3177 38 1 3.7098 2.1292 -2.3951 39 1 0.8968 1.7616 -1.8569 40 1 1.8421 3.1629 -1.1905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837403573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:45 Heat of formation + Delta-G solvation = -90.081445 kcal Electronic energy + Delta-G solvation = -23245.827466 eV Core-core repulsion = 19798.358097 eV Total energy + Delta-G solvation = -3447.469369 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.16592 -39.01107 -37.17822 -35.57600 -35.15131 -33.68290 -30.22841 -29.73622 -28.42873 -27.02138 -25.61861 -25.43264 -23.17757 -22.01474 -20.99779 -19.72003 -19.37334 -17.47245 -16.66494 -16.52030 -16.06534 -15.36660 -15.31220 -15.17874 -14.84385 -14.28118 -14.16357 -13.78017 -13.40707 -12.90515 -12.76348 -12.58160 -12.37984 -12.00199 -11.79848 -11.59971 -11.41121 -11.19400 -11.10289 -11.03696 -10.89783 -10.69662 -10.59941 -10.23427 -10.15747 -9.81406 -9.72235 -9.44611 -9.32610 -8.80209 -7.65723 -7.39618 -6.85831 -4.47303 2.20153 2.78408 3.07176 3.15630 3.18337 3.35903 3.81412 3.90161 3.93958 4.46635 4.51409 4.61945 4.70907 4.78915 5.24146 5.30260 5.48513 5.51219 5.57373 5.58405 5.59264 5.63747 5.75028 5.82615 5.98199 6.09603 6.12712 6.14622 6.17601 6.35492 6.57008 6.92388 7.03807 7.14689 7.26526 7.33033 7.45823 7.60736 7.87227 7.94091 8.12656 8.56569 8.70534 8.79019 9.09853 10.11243 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.004721 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.134030 B = 5929.778094 C = 6909.493307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.350 6.350 3 C 0.095 3.905 4 C 0.056 3.944 5 O -0.355 6.355 6 C 0.502 3.498 7 O -0.516 6.516 8 C -0.244 4.244 9 C -0.037 4.037 10 C -0.244 4.244 11 C -0.089 4.089 12 C -0.148 4.148 13 C 0.152 3.848 14 C -0.422 4.422 15 H 0.100 0.900 16 C 0.072 3.928 17 N -0.791 5.791 18 Si 0.916 3.084 19 H -0.258 1.258 20 H -0.273 1.273 21 H -0.272 1.272 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.161 4.161 25 H 0.086 0.914 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.115 0.885 34 H 0.283 0.717 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.496 -1.532 -12.593 12.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.268 6.268 3 C 0.054 3.946 4 C -0.020 4.020 5 O -0.273 6.273 6 C 0.352 3.648 7 O -0.406 6.406 8 C -0.247 4.247 9 C -0.056 4.056 10 C -0.263 4.263 11 C -0.108 4.108 12 C -0.167 4.167 13 C 0.149 3.851 14 C -0.450 4.450 15 H 0.118 0.882 16 C -0.147 4.147 17 N -0.416 5.416 18 Si 0.741 3.259 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.198 1.198 22 C -0.159 4.159 23 C -0.171 4.171 24 C -0.199 4.199 25 H 0.105 0.895 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.080 0.920 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.133 0.867 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.302 -1.362 -12.420 12.705 hybrid contribution -0.700 1.047 0.215 1.278 sum 1.603 -0.315 -12.205 12.314 Atomic orbital electron populations 1.22743 0.81183 1.02588 1.00270 1.87919 1.19579 1.24749 1.94600 1.22644 0.95936 0.84394 0.91588 1.23270 1.01415 0.93715 0.83564 1.86675 1.80769 1.45415 1.14458 1.21454 0.74785 0.85655 0.82872 1.90746 1.44136 1.18877 1.86869 1.18843 1.22776 0.93543 0.89551 1.20887 0.94556 0.92983 0.97149 1.20384 1.14694 0.98622 0.92625 1.20864 0.98716 0.95117 0.96093 1.21236 1.03531 0.93581 0.98320 1.17457 0.85812 0.93020 0.88856 1.20047 1.20686 0.93799 1.10462 0.88182 1.26061 0.94629 1.00503 0.93481 1.69701 1.19284 1.36445 1.16216 0.86112 0.79083 0.81937 0.78802 1.18099 1.19855 1.19753 1.23001 0.93780 1.03597 0.95515 1.22760 0.96623 1.01178 0.96523 1.23512 0.99302 1.00569 0.96480 0.89540 0.93528 0.94224 0.91976 0.90916 0.87724 0.88707 0.88788 0.86743 0.90623 0.88693 0.89984 0.89734 0.91155 0.90629 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 101.05 1.07 1.43 16 2 O -0.35 -5.28 10.34 -47.49 -0.49 -5.77 16 3 C 0.09 1.31 0.97 -89.81 -0.09 1.22 16 4 C 0.06 0.94 4.34 37.16 0.16 1.10 16 5 O -0.35 -7.43 9.27 -45.61 -0.42 -7.85 16 6 C 0.50 12.30 7.84 34.41 0.27 12.56 16 7 O -0.52 -13.60 13.48 -19.29 -0.26 -13.86 16 8 C -0.24 -6.23 5.92 -104.39 -0.62 -6.85 16 9 C -0.04 -0.86 9.60 -39.20 -0.38 -1.23 16 10 C -0.24 -5.32 10.03 -39.37 -0.39 -5.72 16 11 C -0.09 -2.01 10.01 -39.59 -0.40 -2.40 16 12 C -0.15 -3.73 8.62 -38.88 -0.34 -4.06 16 13 C 0.15 4.10 5.44 -106.53 -0.58 3.52 16 14 C -0.42 -11.53 7.48 -37.82 -0.28 -11.82 16 15 H 0.10 2.82 6.19 -52.49 -0.33 2.49 16 16 C 0.07 1.83 5.24 -17.30 -0.09 1.74 16 17 N -0.79 -20.44 11.48 55.57 0.64 -19.80 16 18 Si 0.92 19.43 29.57 -169.99 -5.03 14.41 16 19 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 22 C -0.12 -1.46 7.47 -25.92 -0.19 -1.65 16 23 C -0.13 -1.30 8.02 -25.92 -0.21 -1.51 16 24 C -0.16 -1.69 7.20 -25.92 -0.19 -1.88 16 25 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.05 0.67 7.31 -51.93 -0.38 0.29 16 27 H 0.04 0.42 6.73 -51.93 -0.35 0.07 16 28 H 0.06 1.05 7.65 -51.93 -0.40 0.66 16 29 H 0.07 1.18 7.92 -51.93 -0.41 0.77 16 30 H 0.10 2.20 7.61 -52.49 -0.40 1.80 16 31 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 32 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 33 H 0.11 2.91 6.95 -52.49 -0.36 2.55 16 34 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 35 H 0.09 1.06 7.95 -51.93 -0.41 0.65 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.74 6.86 -51.93 -0.36 0.38 16 40 H 0.09 0.88 8.10 -51.93 -0.42 0.46 16 LS Contribution 334.45 15.07 5.04 5.04 Total: -1.00 -29.85 334.45 -8.26 -38.11 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.49 Total: 5.27 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -2.25 Total: -15.54 kcal Atomic # 7 Polarization: -20.44 SS G_CDS: 0.64 Total: -19.80 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -1.17 Total: -27.48 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.41 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.85 -8.26 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837403573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.971 kcal (2) G-P(sol) polarization free energy of solvation -29.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds