Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99831 * 2 1 4 4 C 1.53002 * 112.84812 * 62.98463 * 3 2 1 5 5 O 1.45195 * 109.47341 * 47.84674 * 4 3 2 6 6 C 1.34808 * 116.99969 * 180.02562 * 5 4 3 7 7 O 1.21535 * 119.99688 * 359.97438 * 6 5 4 8 8 C 1.47279 * 120.00229 * 179.97438 * 6 5 4 9 9 C 1.39299 * 120.28805 * 354.16910 * 8 6 5 10 10 C 1.38196 * 120.08718 * 180.29918 * 9 8 6 11 11 C 1.38839 * 120.68322 * 359.43754 * 10 9 8 12 12 C 1.37597 * 120.58241 * 0.56413 * 11 10 9 13 13 C 1.40711 * 119.88844 * 359.72123 * 12 11 10 14 14 C 1.40857 * 120.33530 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99949 * 141.39977 * 14 13 12 16 16 C 1.40293 * 119.99944 * 321.39896 * 14 13 12 17 17 N 1.30618 * 120.00106 * 350.71697 * 16 14 13 18 18 Si 1.86804 * 120.00100 * 170.71050 * 16 14 13 19 19 H 1.48497 * 109.46839 * 0.02562 * 18 16 14 20 20 H 1.48493 * 109.46846 * 120.00039 * 18 16 14 21 21 H 1.48500 * 109.47401 * 240.00099 * 18 16 14 22 22 C 1.53779 * 113.68783 * 194.25190 * 3 2 1 23 23 C 1.53785 * 87.08103 * 89.12788 * 22 3 2 24 24 C 1.53777 * 87.08018 * 25.43051 * 23 22 3 25 25 H 1.09005 * 109.46987 * 175.28312 * 1 2 3 26 26 H 1.08995 * 109.47587 * 295.28532 * 1 2 3 27 27 H 1.08997 * 109.46953 * 55.29250 * 1 2 3 28 28 H 1.09005 * 109.46737 * 287.84342 * 4 3 2 29 29 H 1.09001 * 109.46570 * 167.84971 * 4 3 2 30 30 H 1.07999 * 119.95396 * 0.02562 * 9 8 6 31 31 H 1.08004 * 119.65848 * 179.72473 * 10 9 8 32 32 H 1.08002 * 119.71207 * 180.28044 * 11 10 9 33 33 H 1.08001 * 120.06237 * 179.74040 * 12 11 10 34 34 H 0.97000 * 120.00107 * 180.02562 * 17 16 14 35 35 H 1.09005 * 113.61096 * 203.67149 * 22 3 2 36 36 H 1.09000 * 113.61640 * 334.57257 * 22 3 2 37 37 H 1.08999 * 113.60891 * 270.88007 * 23 22 3 38 38 H 1.08999 * 113.68618 * 139.98874 * 23 22 3 39 39 H 1.09001 * 113.61012 * 220.02138 * 24 23 22 40 40 H 1.09000 * 113.61698 * 89.11599 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.6668 2.1087 1.2561 5 8 1.8917 1.2876 2.4323 6 6 1.6342 1.8503 3.6299 7 8 1.2331 2.9960 3.6893 8 6 1.8389 1.0767 4.8664 9 6 2.1812 -0.2720 4.8027 10 6 2.3662 -0.9955 5.9655 11 6 2.2260 -0.3896 7.2068 12 6 1.8885 0.9410 7.3022 13 6 1.6887 1.6992 6.1338 14 6 1.3435 3.0620 6.2205 15 1 1.7613 3.7705 5.5205 16 6 0.4570 3.4992 7.2161 17 7 -0.1877 2.6278 7.9449 18 14 0.1988 5.3274 7.4996 19 1 1.0397 6.0992 6.5497 20 1 -1.2307 5.6650 7.2815 21 1 0.5817 5.6713 8.8926 22 6 3.5084 1.3148 -0.3467 23 6 3.0863 1.4448 -1.8198 24 6 1.7830 2.0809 -1.3084 25 1 -0.3633 -1.0242 -0.0845 26 1 -0.3634 0.4389 0.9291 27 1 -0.3633 0.5851 -0.8448 28 1 0.6202 2.4113 1.2189 29 1 2.2997 2.9948 1.3050 30 1 2.2978 -0.7541 3.8433 31 1 2.6271 -2.0420 5.9081 32 1 2.3786 -0.9687 8.1055 33 1 1.7776 1.4028 8.2722 34 1 -0.8009 2.9301 8.6331 35 1 4.0392 2.1874 0.0340 36 1 4.0152 0.3771 -0.1187 37 1 2.9385 0.4865 -2.3177 38 1 3.7098 2.1292 -2.3951 39 1 0.8968 1.7616 -1.8569 40 1 1.8421 3.1629 -1.1905 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837403573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = -105.545856 kcal Electronic energy + Delta-G solvation = -23246.498053 eV Core-core repulsion = 19798.358097 eV Total energy + Delta-G solvation = -3448.139956 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.48716 -40.57028 -38.99726 -36.96862 -36.59083 -35.58274 -32.07417 -31.60756 -29.77476 -28.03863 -27.42723 -26.45137 -24.74306 -23.39539 -22.82712 -21.44032 -20.46303 -19.38489 -18.38150 -17.93396 -17.45539 -17.09863 -16.74327 -16.48499 -16.14521 -15.95185 -15.25198 -15.18278 -15.06236 -14.59696 -14.43212 -14.15649 -13.69979 -13.47374 -13.29663 -12.95996 -12.91181 -12.78628 -12.59166 -12.38598 -12.35735 -12.04574 -11.98313 -11.73040 -11.61647 -11.54396 -11.20632 -11.08324 -10.83298 -10.43484 -9.54129 -9.30816 -8.74728 -6.46923 0.30035 0.96070 1.32731 1.44866 1.48327 1.86257 2.00108 2.18501 2.70061 2.72016 3.42902 3.55392 3.58881 3.64564 3.83133 4.18902 4.25213 4.34543 4.37591 4.39873 4.43608 4.49961 4.57914 4.72262 4.75024 4.81348 4.86021 5.02115 5.03805 5.07049 5.14544 5.16754 5.25156 5.35325 5.48494 5.59689 5.76883 5.97742 6.02325 6.21457 6.25747 6.58700 6.75426 6.85045 7.22213 8.24997 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.004721 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.134030 B = 5929.778094 C = 6909.493307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.368 6.368 3 C 0.082 3.918 4 C 0.049 3.951 5 O -0.353 6.353 6 C 0.502 3.498 7 O -0.544 6.544 8 C -0.270 4.270 9 C -0.040 4.040 10 C -0.233 4.233 11 C -0.081 4.081 12 C -0.171 4.171 13 C 0.125 3.875 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.035 3.965 17 N -0.819 5.819 18 Si 0.981 3.019 19 H -0.268 1.268 20 H -0.267 1.267 21 H -0.251 1.251 22 C -0.128 4.128 23 C -0.118 4.118 24 C -0.150 4.150 25 H 0.103 0.897 26 H 0.020 0.980 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.135 0.865 32 H 0.130 0.870 33 H 0.104 0.896 34 H 0.292 0.708 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.837 -2.372 -13.790 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.287 6.287 3 C 0.042 3.958 4 C -0.025 4.025 5 O -0.271 6.271 6 C 0.353 3.647 7 O -0.437 6.437 8 C -0.273 4.273 9 C -0.059 4.059 10 C -0.252 4.252 11 C -0.099 4.099 12 C -0.190 4.190 13 C 0.122 3.878 14 C -0.487 4.487 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.445 5.445 18 Si 0.802 3.198 19 H -0.192 1.192 20 H -0.191 1.191 21 H -0.175 1.175 22 C -0.165 4.165 23 C -0.155 4.155 24 C -0.188 4.188 25 H 0.121 0.879 26 H 0.039 0.961 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.141 0.859 31 H 0.153 0.847 32 H 0.148 0.852 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.118 0.882 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.653 -2.237 -13.629 14.063 hybrid contribution -0.768 1.145 0.497 1.466 sum 1.885 -1.091 -13.132 13.311 Atomic orbital electron populations 1.22862 0.80317 1.03965 0.99914 1.87895 1.20673 1.25482 1.94616 1.22937 0.97428 0.84317 0.91101 1.23696 1.01240 0.94393 0.83221 1.86639 1.80099 1.45839 1.14501 1.21455 0.74192 0.85189 0.83878 1.90715 1.45444 1.20029 1.87553 1.19202 1.23332 0.95008 0.89781 1.21137 0.94022 0.92025 0.98687 1.20856 1.12302 1.00322 0.91672 1.21263 0.96517 0.94171 0.97997 1.21234 1.05398 0.94996 0.97370 1.17814 0.86364 0.93536 0.90121 1.20023 1.22845 0.94099 1.11758 0.90377 1.26773 0.93730 1.04716 0.92803 1.69713 1.19813 1.38156 1.16837 0.85177 0.78900 0.76450 0.79293 1.19212 1.19134 1.17540 1.23107 0.92451 1.03437 0.97495 1.22705 0.95987 1.01800 0.95043 1.23527 1.00409 1.00894 0.93956 0.87851 0.96115 0.91846 0.92626 0.90661 0.85934 0.84694 0.85249 0.87836 0.89680 0.88191 0.90870 0.89392 0.88837 0.89479 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.56 113.37 1.20 1.82 16 2 O -0.37 -10.71 10.34 -137.26 -1.42 -12.13 16 3 C 0.08 2.19 0.97 -10.27 -0.01 2.18 16 4 C 0.05 1.68 4.34 71.98 0.31 1.99 16 5 O -0.35 -15.10 9.27 -52.59 -0.49 -15.59 16 6 C 0.50 25.49 7.84 70.20 0.55 26.04 16 7 O -0.54 -30.16 13.48 19.72 0.27 -29.90 16 8 C -0.27 -14.13 5.92 -19.71 -0.12 -14.25 16 9 C -0.04 -1.82 9.60 22.52 0.22 -1.60 16 10 C -0.23 -9.55 10.03 22.40 0.22 -9.33 16 11 C -0.08 -3.51 10.01 22.26 0.22 -3.28 16 12 C -0.17 -8.74 8.62 22.72 0.20 -8.55 16 13 C 0.12 6.97 5.44 -21.10 -0.11 6.86 16 14 C -0.46 -26.32 7.48 23.41 0.18 -26.14 16 15 H 0.08 4.69 6.19 -2.91 -0.02 4.67 16 16 C 0.04 1.86 5.24 85.37 0.45 2.31 16 17 N -0.82 -43.30 11.48 21.88 0.25 -43.05 16 18 Si 0.98 40.83 29.57 68.60 2.03 42.86 16 19 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 20 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 22 C -0.13 -2.88 7.47 31.12 0.23 -2.64 16 23 C -0.12 -1.97 8.02 31.12 0.25 -1.72 16 24 C -0.15 -2.80 7.20 31.12 0.22 -2.58 16 25 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 26 H 0.02 0.60 7.31 -2.39 -0.02 0.58 16 27 H 0.06 1.22 6.73 -2.39 -0.02 1.21 16 28 H 0.06 1.94 7.65 -2.38 -0.02 1.92 16 29 H 0.08 2.49 7.92 -2.39 -0.02 2.47 16 30 H 0.12 4.99 7.61 -2.91 -0.02 4.97 16 31 H 0.14 4.48 8.06 -2.91 -0.02 4.45 16 32 H 0.13 4.63 8.06 -2.91 -0.02 4.61 16 33 H 0.10 5.42 6.95 -2.91 -0.02 5.40 16 34 H 0.29 13.82 8.29 -92.71 -0.77 13.05 16 35 H 0.10 2.11 7.95 -2.38 -0.02 2.10 16 36 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.44 6.86 -2.39 -0.02 1.43 16 40 H 0.10 1.71 8.10 -2.39 -0.02 1.69 16 Total: -1.00 -66.99 334.45 5.69 -61.30 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.04 Total: 25.40 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.01 Total: -28.90 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 0.25 Total: -43.05 kcal Atomic # 8 Polarization: -55.97 SS G_CDS: -1.64 Total: -57.61 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -66.99 5.69 -61.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837403573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.243 kcal (2) G-P(sol) polarization free energy of solvation -66.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds