Wall clock time and date at job start Tue Mar 31 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42891 * 114.00002 * 2 1 4 4 C 1.52999 * 112.85401 * 64.93655 * 3 2 1 5 5 O 1.45209 * 109.46664 * 52.83010 * 4 3 2 6 6 C 1.34775 * 116.99709 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00139 * 359.97438 * 6 5 4 8 8 C 1.47504 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.40071 * 119.90446 * 180.02562 * 8 6 5 10 10 C 1.36293 * 120.10751 * 180.25291 * 9 8 6 11 11 C 1.40904 * 119.89443 * 359.51837 * 10 9 8 12 12 C 1.41090 * 120.10097 * 180.23267 * 11 10 9 13 13 H 1.07997 * 119.99837 * 205.06488 * 12 11 10 14 14 C 1.40244 * 119.99586 * 25.06460 * 12 11 10 15 15 N 1.30631 * 120.00554 * 15.81323 * 14 12 11 16 16 Si 1.86807 * 119.99683 * 195.81390 * 14 12 11 17 17 H 1.48503 * 109.47068 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46705 * 119.99861 * 16 14 12 19 19 H 1.48496 * 109.46984 * 239.99870 * 16 14 12 20 20 C 1.40901 * 119.80315 * 0.49901 * 11 10 9 21 21 C 1.36306 * 119.89743 * 359.73418 * 20 11 10 22 22 C 1.53787 * 113.69102 * 196.20756 * 3 2 1 23 23 C 1.53784 * 87.08051 * 89.12485 * 22 3 2 24 24 C 1.53783 * 113.61317 * 293.74207 * 3 2 1 25 25 H 1.08998 * 109.46876 * 304.18476 * 1 2 3 26 26 H 1.09006 * 109.46693 * 64.18604 * 1 2 3 27 27 H 1.09004 * 109.47049 * 184.18029 * 1 2 3 28 28 H 1.09003 * 109.47282 * 292.83421 * 4 3 2 29 29 H 1.08998 * 109.47515 * 172.82837 * 4 3 2 30 30 H 1.08002 * 119.94252 * 359.96990 * 9 8 6 31 31 H 1.07993 * 120.05499 * 179.74649 * 10 9 8 32 32 H 0.97000 * 120.00286 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.05375 * 179.71297 * 20 11 10 34 34 H 1.07996 * 119.95246 * 180.02562 * 21 20 11 35 35 H 1.08996 * 113.61331 * 203.67550 * 22 3 2 36 36 H 1.09001 * 113.61234 * 334.57651 * 22 3 2 37 37 H 1.09000 * 113.61576 * 270.88359 * 23 22 3 38 38 H 1.09000 * 113.61377 * 139.97815 * 23 22 3 39 39 H 1.08998 * 113.61615 * 25.35134 * 24 3 2 40 40 H 1.09003 * 113.61343 * 156.16995 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7063 2.0912 1.2771 5 8 2.0786 1.2968 2.4342 6 6 1.8732 1.8482 3.6467 7 8 1.3964 2.9624 3.7345 8 6 2.2280 1.0996 4.8671 9 6 2.0132 1.6744 6.1262 10 6 2.3443 0.9884 7.2564 11 6 2.8943 -0.3051 7.1571 12 6 3.2341 -1.0210 8.3244 13 1 3.9923 -1.7891 8.2852 14 6 2.5873 -0.7352 9.5355 15 7 1.4775 -0.0461 9.5366 16 14 3.3128 -1.3399 11.1472 17 1 4.5649 -2.0907 10.8756 18 1 3.6128 -0.1778 12.0218 19 1 2.3377 -2.2312 11.8254 20 6 3.1091 -0.8792 5.8885 21 6 2.7793 -0.1839 4.7634 22 6 3.4970 1.3198 -0.3931 23 6 3.0292 1.4701 -1.8503 24 6 1.7425 2.0989 -1.2898 25 1 -0.3633 0.5774 0.8501 26 1 -0.3633 0.4475 -0.9252 27 1 -0.3633 -1.0250 0.0749 28 1 0.6410 2.3177 1.3195 29 1 2.2757 3.0206 1.2761 30 1 1.5886 2.6646 6.2014 31 1 2.1821 1.4340 8.2267 32 1 1.0303 0.1519 10.3743 33 1 3.5347 -1.8685 5.8075 34 1 2.9431 -0.6233 3.7906 35 1 4.0396 2.1871 -0.0170 36 1 4.0104 0.3791 -0.1941 37 1 2.8657 0.5189 -2.3567 38 1 3.6352 2.1630 -2.4342 39 1 0.8396 1.7871 -1.8148 40 1 1.8042 3.1792 -1.1586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837601920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:47 Heat of formation + Delta-G solvation = -97.436275 kcal Electronic energy + Delta-G solvation = -22584.054634 eV Core-core repulsion = 19136.266336 eV Total energy + Delta-G solvation = -3447.788298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29246 -39.17174 -37.38029 -35.65538 -35.44504 -33.94619 -30.34955 -29.63473 -28.67754 -27.13770 -26.07179 -25.55425 -23.02945 -21.96267 -21.00291 -19.86325 -19.52402 -17.57768 -16.93275 -16.81567 -16.24131 -15.53712 -15.49137 -15.28689 -15.02819 -14.29176 -14.06704 -13.88855 -13.40663 -13.09322 -12.84081 -12.48554 -12.39299 -12.20216 -11.91940 -11.86739 -11.49949 -11.37090 -11.26056 -11.16049 -10.97646 -10.96475 -10.68219 -10.35480 -10.10233 -10.02883 -9.69842 -9.55322 -9.39690 -9.30093 -7.73630 -7.61751 -7.06679 -4.67037 2.06939 2.86322 2.93353 2.98925 3.04632 3.20992 3.64347 3.70058 3.71976 4.38576 4.41551 4.49407 4.64233 4.68316 5.14143 5.22986 5.33782 5.42319 5.45504 5.50515 5.53851 5.55817 5.67659 5.72474 5.92230 6.00906 6.03361 6.10837 6.24502 6.27787 6.75702 6.82653 6.99371 7.07339 7.14728 7.18499 7.43086 7.63347 7.81035 7.88466 8.02637 8.37816 8.58101 8.70408 8.77123 9.83921 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.003104 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.678811 B = 9017.949564 C = 9228.921118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.093 3.907 4 C 0.055 3.945 5 O -0.347 6.347 6 C 0.511 3.489 7 O -0.554 6.554 8 C -0.273 4.273 9 C -0.034 4.034 10 C -0.184 4.184 11 C 0.131 3.869 12 C -0.434 4.434 13 H 0.087 0.913 14 C 0.071 3.929 15 N -0.766 5.766 16 Si 0.916 3.084 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.271 1.271 20 C -0.240 4.240 21 C -0.027 4.027 22 C -0.121 4.121 23 C -0.134 4.134 24 C -0.160 4.160 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.088 0.912 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.288 0.712 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.076 0.924 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 1.323 -13.907 13.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.268 6.268 3 C 0.053 3.947 4 C -0.021 4.021 5 O -0.264 6.264 6 C 0.364 3.636 7 O -0.449 6.449 8 C -0.276 4.276 9 C -0.053 4.053 10 C -0.203 4.203 11 C 0.128 3.872 12 C -0.462 4.462 13 H 0.105 0.895 14 C -0.151 4.151 15 N -0.389 5.389 16 Si 0.739 3.261 17 H -0.180 1.180 18 H -0.193 1.193 19 H -0.196 1.196 20 C -0.259 4.259 21 C -0.045 4.045 22 C -0.158 4.158 23 C -0.171 4.171 24 C -0.198 4.198 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.143 0.857 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.113 0.887 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.208 1.551 -13.755 13.844 hybrid contribution -0.278 0.162 0.738 0.805 sum -0.071 1.713 -13.018 13.130 Atomic orbital electron populations 1.22760 0.81214 1.02996 0.99890 1.87950 1.19550 1.24718 1.94573 1.22641 0.96264 0.84453 0.91343 1.23321 1.00635 0.94232 0.83868 1.86672 1.78129 1.47209 1.14390 1.21675 0.74375 0.84470 0.83122 1.90691 1.45382 1.21268 1.87524 1.18238 1.22150 0.98333 0.88848 1.20466 0.95755 0.97906 0.91152 1.21021 1.06907 0.95137 0.97231 1.17864 0.86445 0.90785 0.92139 1.19956 1.17513 1.16420 0.92269 0.89468 1.26166 0.93592 0.93401 1.01897 1.69740 1.11883 1.27211 1.30076 0.86117 0.80371 0.79558 0.80006 1.17985 1.19310 1.19579 1.20734 1.12594 1.00094 0.92477 1.20574 0.93843 0.92581 0.97525 1.22983 0.93773 1.03705 0.95383 1.22770 0.96547 1.01236 0.96546 1.23508 0.99492 1.00473 0.96335 0.93704 0.94187 0.89346 0.91860 0.90773 0.88115 0.85743 0.90076 0.88207 0.87808 0.88679 0.89852 0.89653 0.91074 0.90569 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 10.63 101.05 1.07 1.40 16 2 O -0.35 -5.04 10.42 -44.07 -0.46 -5.49 16 3 C 0.09 1.21 0.94 -89.80 -0.08 1.13 16 4 C 0.05 0.86 4.46 37.16 0.17 1.02 16 5 O -0.35 -6.87 9.32 -44.73 -0.42 -7.29 16 6 C 0.51 11.62 7.89 34.51 0.27 11.89 16 7 O -0.55 -13.37 16.11 -19.27 -0.31 -13.68 16 8 C -0.27 -6.57 5.89 -104.75 -0.62 -7.19 16 9 C -0.03 -0.84 9.52 -39.59 -0.38 -1.22 16 10 C -0.18 -4.70 8.63 -39.27 -0.34 -5.04 16 11 C 0.13 3.35 5.58 -106.80 -0.60 2.76 16 12 C -0.43 -10.73 9.05 -37.75 -0.34 -11.07 16 13 H 0.09 2.04 7.90 -52.49 -0.41 1.62 16 14 C 0.07 1.66 5.18 -17.31 -0.09 1.57 16 15 N -0.77 -18.50 10.86 55.56 0.60 -17.89 16 16 Si 0.92 17.14 29.59 -169.99 -5.03 12.11 16 17 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 18 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 19 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 20 C -0.24 -5.71 9.73 -39.27 -0.38 -6.09 16 21 C -0.03 -0.61 9.55 -39.59 -0.38 -0.99 16 22 C -0.12 -1.38 7.47 -25.91 -0.19 -1.58 16 23 C -0.13 -1.22 8.02 -25.91 -0.21 -1.43 16 24 C -0.16 -1.55 7.21 -25.92 -0.19 -1.74 16 25 H 0.04 0.57 6.81 -51.93 -0.35 0.22 16 26 H 0.04 0.38 6.86 -51.93 -0.36 0.02 16 27 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.98 7.21 -51.93 -0.37 0.61 16 29 H 0.07 1.10 8.02 -51.93 -0.42 0.69 16 30 H 0.10 2.42 7.63 -52.49 -0.40 2.02 16 31 H 0.12 3.22 6.11 -52.49 -0.32 2.90 16 32 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 33 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 34 H 0.10 2.18 7.59 -52.49 -0.40 1.79 16 35 H 0.09 1.00 8.02 -51.93 -0.42 0.59 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.68 6.83 -51.93 -0.35 0.33 16 40 H 0.09 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 337.36 15.07 5.08 5.08 Total: -1.00 -28.61 337.36 -8.28 -36.90 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.47 Total: 6.85 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.28 Total: -16.59 kcal Atomic # 7 Polarization: -18.50 SS G_CDS: 0.60 Total: -17.89 kcal Atomic # 8 Polarization: -25.28 SS G_CDS: -1.19 Total: -26.46 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.61 -8.28 -36.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837601920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.541 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds