Wall clock time and date at job start Tue Mar 31 2020 06:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42891 * 114.00002 * 2 1 4 4 C 1.52999 * 112.85401 * 64.93655 * 3 2 1 5 5 O 1.45209 * 109.46664 * 52.83010 * 4 3 2 6 6 C 1.34775 * 116.99709 * 180.02562 * 5 4 3 7 7 O 1.21512 * 120.00139 * 359.97438 * 6 5 4 8 8 C 1.47504 * 119.99869 * 180.02562 * 6 5 4 9 9 C 1.40071 * 119.90446 * 180.02562 * 8 6 5 10 10 C 1.36293 * 120.10751 * 180.25291 * 9 8 6 11 11 C 1.40904 * 119.89443 * 359.51837 * 10 9 8 12 12 C 1.41090 * 120.10097 * 180.23267 * 11 10 9 13 13 H 1.07997 * 119.99837 * 205.06488 * 12 11 10 14 14 C 1.40244 * 119.99586 * 25.06460 * 12 11 10 15 15 N 1.30631 * 120.00554 * 15.81323 * 14 12 11 16 16 Si 1.86807 * 119.99683 * 195.81390 * 14 12 11 17 17 H 1.48503 * 109.47068 * 0.02562 * 16 14 12 18 18 H 1.48502 * 109.46705 * 119.99861 * 16 14 12 19 19 H 1.48496 * 109.46984 * 239.99870 * 16 14 12 20 20 C 1.40901 * 119.80315 * 0.49901 * 11 10 9 21 21 C 1.36306 * 119.89743 * 359.73418 * 20 11 10 22 22 C 1.53787 * 113.69102 * 196.20756 * 3 2 1 23 23 C 1.53784 * 87.08051 * 89.12485 * 22 3 2 24 24 C 1.53783 * 113.61317 * 293.74207 * 3 2 1 25 25 H 1.08998 * 109.46876 * 304.18476 * 1 2 3 26 26 H 1.09006 * 109.46693 * 64.18604 * 1 2 3 27 27 H 1.09004 * 109.47049 * 184.18029 * 1 2 3 28 28 H 1.09003 * 109.47282 * 292.83421 * 4 3 2 29 29 H 1.08998 * 109.47515 * 172.82837 * 4 3 2 30 30 H 1.08002 * 119.94252 * 359.96990 * 9 8 6 31 31 H 1.07993 * 120.05499 * 179.74649 * 10 9 8 32 32 H 0.97000 * 120.00286 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.05375 * 179.71297 * 20 11 10 34 34 H 1.07996 * 119.95246 * 180.02562 * 21 20 11 35 35 H 1.08996 * 113.61331 * 203.67550 * 22 3 2 36 36 H 1.09001 * 113.61234 * 334.57651 * 22 3 2 37 37 H 1.09000 * 113.61576 * 270.88359 * 23 22 3 38 38 H 1.09000 * 113.61377 * 139.97815 * 23 22 3 39 39 H 1.08998 * 113.61615 * 25.35134 * 24 3 2 40 40 H 1.09003 * 113.61343 * 156.16995 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.7063 2.0912 1.2771 5 8 2.0786 1.2968 2.4342 6 6 1.8732 1.8482 3.6467 7 8 1.3964 2.9624 3.7345 8 6 2.2280 1.0996 4.8671 9 6 2.0132 1.6744 6.1262 10 6 2.3443 0.9884 7.2564 11 6 2.8943 -0.3051 7.1571 12 6 3.2341 -1.0210 8.3244 13 1 3.9923 -1.7891 8.2852 14 6 2.5873 -0.7352 9.5355 15 7 1.4775 -0.0461 9.5366 16 14 3.3128 -1.3399 11.1472 17 1 4.5649 -2.0907 10.8756 18 1 3.6128 -0.1778 12.0218 19 1 2.3377 -2.2312 11.8254 20 6 3.1091 -0.8792 5.8885 21 6 2.7793 -0.1839 4.7634 22 6 3.4970 1.3198 -0.3931 23 6 3.0292 1.4701 -1.8503 24 6 1.7425 2.0989 -1.2898 25 1 -0.3633 0.5774 0.8501 26 1 -0.3633 0.4475 -0.9252 27 1 -0.3633 -1.0250 0.0749 28 1 0.6410 2.3177 1.3195 29 1 2.2757 3.0206 1.2761 30 1 1.5886 2.6646 6.2014 31 1 2.1821 1.4340 8.2267 32 1 1.0303 0.1519 10.3743 33 1 3.5347 -1.8685 5.8075 34 1 2.9431 -0.6233 3.7906 35 1 4.0396 2.1871 -0.0170 36 1 4.0104 0.3791 -0.1941 37 1 2.8657 0.5189 -2.3567 38 1 3.6352 2.1630 -2.4342 39 1 0.8396 1.7871 -1.8148 40 1 1.8042 3.1792 -1.1586 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837601920.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:47 Heat of formation + Delta-G solvation = -111.222260 kcal Electronic energy + Delta-G solvation = -22584.652439 eV Core-core repulsion = 19136.266336 eV Total energy + Delta-G solvation = -3448.386103 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.55533 -40.60423 -39.20905 -37.12893 -36.59346 -35.77423 -32.19112 -31.51047 -29.96568 -28.08123 -27.81796 -26.43183 -24.43450 -23.39658 -22.83363 -21.58921 -20.48993 -19.43269 -18.66191 -18.14044 -17.49710 -17.18933 -16.83374 -16.51780 -16.15313 -15.77450 -15.25012 -15.18920 -15.06851 -14.71813 -14.27225 -14.06410 -13.95540 -13.54819 -13.35608 -13.20558 -12.88408 -12.82247 -12.67105 -12.41443 -12.38849 -12.06126 -11.81335 -11.75176 -11.68407 -11.43340 -11.30975 -11.19279 -11.09254 -10.47008 -9.65535 -9.53363 -8.84414 -6.56974 0.21825 1.12334 1.35380 1.40657 1.56588 1.78681 1.86956 2.14595 2.67461 2.69655 3.43120 3.53279 3.61519 3.62133 3.83292 4.12136 4.22127 4.29653 4.35016 4.36109 4.42867 4.44029 4.51127 4.72364 4.75119 4.83973 4.91805 4.96802 5.02444 5.06674 5.13697 5.16272 5.19988 5.34739 5.41039 5.53841 5.76477 5.91988 5.96729 6.13664 6.21363 6.48261 6.69152 6.80718 7.00642 8.09800 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.034875 B = 0.003104 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.678811 B = 9017.949564 C = 9228.921118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.372 6.372 3 C 0.081 3.919 4 C 0.047 3.953 5 O -0.348 6.348 6 C 0.516 3.484 7 O -0.574 6.574 8 C -0.292 4.292 9 C -0.042 4.042 10 C -0.200 4.200 11 C 0.105 3.895 12 C -0.456 4.456 13 H 0.096 0.904 14 C 0.032 3.968 15 N -0.796 5.796 16 Si 0.994 3.006 17 H -0.251 1.251 18 H -0.263 1.263 19 H -0.263 1.263 20 C -0.249 4.249 21 C -0.021 4.021 22 C -0.129 4.129 23 C -0.120 4.120 24 C -0.148 4.148 25 H 0.027 0.973 26 H 0.065 0.935 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.299 0.701 33 H 0.117 0.883 34 H 0.123 0.877 35 H 0.101 0.899 36 H 0.070 0.930 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.959 0.795 -14.783 14.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.291 6.291 3 C 0.041 3.959 4 C -0.027 4.027 5 O -0.265 6.265 6 C 0.369 3.631 7 O -0.470 6.470 8 C -0.294 4.294 9 C -0.060 4.060 10 C -0.220 4.220 11 C 0.102 3.898 12 C -0.483 4.483 13 H 0.114 0.886 14 C -0.188 4.188 15 N -0.419 5.419 16 Si 0.813 3.187 17 H -0.174 1.174 18 H -0.187 1.187 19 H -0.187 1.187 20 C -0.268 4.268 21 C -0.039 4.039 22 C -0.166 4.166 23 C -0.158 4.158 24 C -0.186 4.186 25 H 0.046 0.954 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.118 0.882 31 H 0.132 0.868 32 H 0.110 0.890 33 H 0.135 0.865 34 H 0.141 0.859 35 H 0.120 0.880 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.728 1.020 -14.669 14.723 hybrid contribution -0.494 0.332 0.959 1.128 sum 0.234 1.352 -13.711 13.779 Atomic orbital electron populations 1.22897 0.80212 1.03690 1.00461 1.87920 1.20822 1.25652 1.94662 1.22928 0.97570 0.84410 0.91027 1.23765 1.00700 0.94915 0.83337 1.86641 1.77670 1.47756 1.14443 1.21435 0.73910 0.83936 0.83869 1.90666 1.46294 1.22014 1.88069 1.18454 1.22549 0.99069 0.89325 1.20532 0.95923 0.97944 0.91651 1.20986 1.08275 0.95709 0.96987 1.18209 0.87125 0.91073 0.93434 1.20301 1.18018 1.16918 0.93024 0.88577 1.27108 0.93441 0.93090 1.05121 1.69775 1.12864 1.27475 1.31758 0.84968 0.79617 0.79115 0.74993 1.17392 1.18732 1.18703 1.20953 1.12826 1.00913 0.92150 1.20734 0.92893 0.92071 0.98214 1.23097 0.92748 1.03416 0.97328 1.22719 0.96107 1.01773 0.95165 1.23518 1.00371 1.00877 0.93806 0.95412 0.91613 0.88368 0.92059 0.90018 0.88233 0.86779 0.88995 0.86503 0.85869 0.88032 0.91099 0.89578 0.88842 0.89435 0.87577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.63 113.37 1.20 1.73 16 2 O -0.37 -10.31 10.42 -140.53 -1.47 -11.77 16 3 C 0.08 1.98 0.94 -10.26 -0.01 1.97 16 4 C 0.05 1.45 4.46 71.98 0.32 1.77 16 5 O -0.35 -13.79 9.32 -53.00 -0.49 -14.28 16 6 C 0.52 23.71 7.89 70.27 0.55 24.27 16 7 O -0.57 -28.09 16.11 19.80 0.32 -27.77 16 8 C -0.29 -14.28 5.89 -19.95 -0.12 -14.39 16 9 C -0.04 -2.13 9.52 22.26 0.21 -1.92 16 10 C -0.20 -10.59 8.63 22.47 0.19 -10.40 16 11 C 0.11 5.47 5.58 -21.27 -0.12 5.35 16 12 C -0.46 -22.59 9.05 23.46 0.21 -22.38 16 13 H 0.10 4.44 7.90 -2.91 -0.02 4.42 16 14 C 0.03 1.47 5.18 85.36 0.44 1.92 16 15 N -0.80 -38.67 10.86 21.87 0.24 -38.44 16 16 Si 0.99 34.25 29.59 68.60 2.03 36.28 16 17 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 18 H -0.26 -8.78 7.11 99.48 0.71 -8.08 16 19 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 20 C -0.25 -11.94 9.73 22.47 0.22 -11.72 16 21 C -0.02 -0.95 9.55 22.26 0.21 -0.74 16 22 C -0.13 -2.74 7.47 31.12 0.23 -2.51 16 23 C -0.12 -1.86 8.02 31.12 0.25 -1.62 16 24 C -0.15 -2.46 7.21 31.12 0.22 -2.24 16 25 H 0.03 0.70 6.81 -2.39 -0.02 0.68 16 26 H 0.07 1.10 6.86 -2.38 -0.02 1.09 16 27 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 28 H 0.06 1.89 7.21 -2.39 -0.02 1.87 16 29 H 0.08 2.37 8.02 -2.39 -0.02 2.35 16 30 H 0.10 4.98 7.63 -2.91 -0.02 4.96 16 31 H 0.11 6.15 6.11 -2.91 -0.02 6.13 16 32 H 0.30 12.87 8.29 -92.71 -0.77 12.10 16 33 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 34 H 0.12 5.12 7.59 -2.91 -0.02 5.09 16 35 H 0.10 1.99 8.02 -2.39 -0.02 1.97 16 36 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.09 1.28 6.83 -2.39 -0.02 1.26 16 40 H 0.11 1.48 8.10 -2.39 -0.02 1.46 16 Total: -1.00 -61.92 337.36 5.70 -56.21 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 1.04 Total: 30.67 kcal Atomic # 6 Polarization: -34.94 SS G_CDS: 4.03 Total: -30.90 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.24 Total: -38.44 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -1.64 Total: -53.83 kcal Atomic # 14 Polarization: 34.25 SS G_CDS: 2.03 Total: 36.28 kcal Total: -61.92 5.70 -56.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837601920.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.008 kcal (2) G-P(sol) polarization free energy of solvation -61.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds