Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47480 * 2 1 4 4 C 1.50709 * 119.99775 * 274.99848 * 3 2 1 5 5 C 1.33081 * 120.00272 * 94.71897 * 3 2 1 6 6 C 1.46953 * 119.99765 * 185.50364 * 5 3 2 7 7 O 1.21529 * 120.00375 * 5.50251 * 6 5 3 8 8 O 1.34803 * 119.99563 * 185.49458 * 6 5 3 9 9 C 1.45202 * 116.99615 * 180.02562 * 8 6 5 10 10 C 1.50708 * 109.47004 * 180.02562 * 9 8 6 11 11 C 1.38299 * 119.93024 * 269.73273 * 10 9 8 12 12 C 1.38105 * 120.06709 * 179.72750 * 11 10 9 13 13 C 1.38884 * 119.92547 * 0.56504 * 12 11 10 14 14 O 1.35750 * 120.06222 * 179.69027 * 13 12 11 15 15 C 1.34832 * 116.99986 * 174.37714 * 14 13 12 16 16 H 1.08003 * 119.99428 * 5.05939 * 15 14 13 17 17 C 1.38647 * 120.00300 * 185.06311 * 15 14 13 18 18 N 1.31564 * 119.99918 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99889 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47125 * 90.00090 * 19 17 15 21 21 H 1.48507 * 109.46784 * 209.99998 * 19 17 15 22 22 H 1.48495 * 109.47058 * 329.99440 * 19 17 15 23 23 C 1.38875 * 119.86655 * 359.70131 * 13 12 11 24 24 C 1.38102 * 119.92792 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.47311 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47151 * 300.00651 * 1 2 3 27 27 H 1.08999 * 109.46663 * 60.00087 * 1 2 3 28 28 H 1.09001 * 109.47151 * 239.99349 * 2 1 3 29 29 H 1.09007 * 109.46547 * 119.99655 * 2 1 3 30 30 H 1.08997 * 109.46959 * 354.83503 * 4 3 2 31 31 H 1.08997 * 109.47153 * 114.83331 * 4 3 2 32 32 H 1.09001 * 109.46833 * 234.83770 * 4 3 2 33 33 H 1.07994 * 120.00037 * 5.51330 * 5 3 2 34 34 H 1.08998 * 109.47747 * 300.00476 * 9 8 6 35 35 H 1.09004 * 109.46890 * 60.00679 * 9 8 6 36 36 H 1.07997 * 119.96579 * 359.97068 * 11 10 9 37 37 H 1.07994 * 120.03689 * 180.27314 * 12 11 10 38 38 H 0.97001 * 119.99709 * 180.02562 * 18 17 15 39 39 H 1.07994 * 120.03690 * 179.97438 * 23 13 12 40 40 H 1.08000 * 119.96450 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3437 2.0165 1.1486 6 6 2.7174 3.4376 1.1614 7 8 2.6461 4.0940 0.1411 8 8 3.1393 4.0132 2.3051 9 6 3.4912 5.4206 2.2438 10 6 3.9371 5.8867 3.6059 11 6 3.0120 6.3995 4.4968 12 6 3.4166 6.8222 5.7478 13 6 4.7560 6.7426 6.1063 14 8 5.1577 7.1631 7.3329 15 6 6.4484 6.9511 7.6603 16 1 7.1303 6.5411 6.9301 17 6 6.9001 7.2594 8.9344 18 7 8.1594 7.0520 9.2539 19 14 5.7204 7.9678 10.1976 20 1 5.0875 6.8612 10.9591 21 1 6.4662 8.8486 11.1321 22 1 4.6698 8.7570 9.5058 23 6 5.6834 6.2323 5.2074 24 6 5.2716 5.8060 3.9601 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9605 1.4979 -2.1315 31 1 1.4775 3.0053 -1.3175 32 1 3.1954 2.5450 -1.3921 33 1 2.3217 1.4556 2.0711 34 1 4.3015 5.5618 1.5286 35 1 2.6229 5.9989 1.9279 36 1 1.9714 6.4659 4.2154 37 1 2.6930 7.2185 6.4447 38 1 8.4753 7.2674 10.1454 39 1 6.7256 6.1695 5.4832 40 1 5.9924 5.4094 3.2604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838043589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = -83.419192 kcal Electronic energy + Delta-G solvation = -21548.377721 eV Core-core repulsion = 18101.197249 eV Total energy + Delta-G solvation = -3447.180472 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.38156 -39.24206 -37.52833 -36.64258 -35.70780 -32.50922 -31.43574 -30.72668 -30.31669 -28.31756 -26.26041 -24.93875 -24.22522 -22.18124 -21.72461 -20.54013 -18.76981 -17.97781 -17.69173 -17.36605 -16.27036 -16.13181 -15.08014 -14.93851 -14.82542 -14.50486 -14.08217 -13.88437 -13.81279 -13.53574 -13.14934 -12.95707 -12.71772 -12.67240 -12.51450 -12.26491 -12.14367 -12.00122 -11.75002 -11.45950 -11.32114 -10.99492 -10.82904 -10.75785 -10.44929 -10.20579 -10.12458 -9.47918 -9.45218 -8.93667 -8.34510 -7.46967 -6.48298 -4.15061 0.96868 1.88797 2.06696 2.90431 3.03134 3.18960 3.22641 3.36482 4.18409 4.30851 4.42037 4.53868 4.76197 4.80404 4.87839 5.00578 5.04638 5.16551 5.17179 5.20352 5.28831 5.49023 5.51113 5.53238 5.56799 5.60584 5.69242 5.77790 5.82499 6.05397 6.16089 6.17262 6.24602 6.46946 6.58266 6.70193 6.93992 7.13730 7.20716 7.51604 7.72773 7.86647 7.96107 8.86256 9.46895 10.58860 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032084 B = 0.002501 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.487307 B =11192.777986 C =11320.237623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.025 4.025 4 C -0.122 4.122 5 C -0.207 4.207 6 C 0.490 3.510 7 O -0.518 6.518 8 O -0.348 6.348 9 C 0.129 3.871 10 C -0.195 4.195 11 C -0.051 4.051 12 C -0.196 4.196 13 C 0.169 3.831 14 O -0.212 6.212 15 C -0.391 4.391 16 H 0.108 0.892 17 C 0.064 3.936 18 N -0.875 5.875 19 Si 0.906 3.094 20 H -0.272 1.272 21 H -0.281 1.281 22 H -0.259 1.259 23 C -0.225 4.225 24 C -0.047 4.047 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.281 0.719 39 H 0.136 0.864 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.812 -10.957 -16.877 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.134 4.134 3 C -0.026 4.026 4 C -0.178 4.178 5 C -0.226 4.226 6 C 0.337 3.663 7 O -0.410 6.410 8 O -0.265 6.265 9 C 0.056 3.944 10 C -0.196 4.196 11 C -0.069 4.069 12 C -0.215 4.215 13 C 0.116 3.884 14 O -0.116 6.116 15 C -0.467 4.467 16 H 0.125 0.875 17 C -0.140 4.140 18 N -0.513 5.513 19 Si 0.732 3.268 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.183 1.183 23 C -0.244 4.244 24 C -0.065 4.065 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.106 0.894 32 H 0.098 0.902 33 H 0.156 0.844 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.133 0.867 37 H 0.138 0.862 38 H 0.091 0.909 39 H 0.154 0.846 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.742 -10.583 -16.767 23.569 hybrid contribution -0.094 0.352 0.657 0.751 sum -12.837 -10.231 -16.110 23.000 Atomic orbital electron populations 1.21722 0.93822 1.02273 1.02642 1.20782 0.96790 0.92101 1.03687 1.22677 0.89167 0.95603 0.95103 1.21113 1.03973 0.99744 0.92971 1.21801 1.09157 0.91824 0.99810 1.21499 0.74241 0.89087 0.81451 1.90812 1.50879 1.65505 1.33823 1.86744 1.75722 1.28233 1.35791 1.21676 0.99858 0.77138 0.95699 1.18954 0.94181 1.10298 0.96128 1.20514 0.97963 0.96197 0.92236 1.20194 0.93518 1.09979 0.97792 1.19180 0.92607 0.91129 0.85505 1.83574 1.30194 1.69539 1.28319 1.20799 0.81934 1.44257 0.99675 0.87467 1.24492 0.96250 0.96257 0.96971 1.69648 1.14052 1.45767 1.21795 0.86167 0.80786 0.79594 0.80295 1.19783 1.20689 1.18312 1.21261 1.00981 1.07605 0.94539 1.20680 0.94504 0.95895 0.95421 0.91845 0.92146 0.92271 0.90229 0.90312 0.92488 0.89418 0.90179 0.84425 0.91182 0.91199 0.86714 0.86201 0.90917 0.84644 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.89 37.16 0.37 -0.45 16 2 C -0.10 -0.58 6.04 -27.89 -0.17 -0.75 16 3 C -0.02 -0.22 5.37 -101.14 -0.54 -0.76 16 4 C -0.12 -1.09 8.34 36.01 0.30 -0.79 16 5 C -0.21 -2.20 9.75 -37.85 -0.37 -2.57 16 6 C 0.49 6.74 7.84 34.26 0.27 7.01 16 7 O -0.52 -7.77 12.98 -19.29 -0.25 -8.02 16 8 O -0.35 -5.33 10.22 -40.77 -0.42 -5.75 16 9 C 0.13 1.93 5.60 36.01 0.20 2.13 16 10 C -0.19 -3.34 5.52 -104.57 -0.58 -3.91 16 11 C -0.05 -0.87 9.69 -39.61 -0.38 -1.25 16 12 C -0.20 -3.83 9.99 -39.39 -0.39 -4.22 16 13 C 0.17 3.85 6.65 -39.11 -0.26 3.59 16 14 O -0.21 -5.51 8.59 0.04 0.00 -5.51 16 15 C -0.39 -10.87 9.95 30.88 0.31 -10.56 16 16 H 0.11 3.04 5.44 -52.48 -0.29 2.75 16 17 C 0.06 1.78 5.49 -17.52 -0.10 1.68 16 18 N -0.88 -24.95 13.96 55.48 0.77 -24.17 16 19 Si 0.91 21.35 28.62 -169.99 -4.86 16.48 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.26 -6.12 7.11 56.52 0.40 -5.72 16 23 C -0.22 -4.80 9.17 -39.40 -0.36 -5.16 16 24 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.39 8.11 -51.93 -0.42 -0.03 16 29 H 0.08 0.43 8.00 -51.92 -0.42 0.02 16 30 H 0.06 0.38 7.98 -51.93 -0.41 -0.04 16 31 H 0.09 0.90 7.09 -51.93 -0.37 0.53 16 32 H 0.08 0.82 7.40 -51.93 -0.38 0.44 16 33 H 0.14 1.27 8.00 -52.49 -0.42 0.85 16 34 H 0.07 0.99 8.08 -51.93 -0.42 0.57 16 35 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 36 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.12 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.14 3.02 5.64 -52.49 -0.30 2.72 16 40 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 LS Contribution 345.37 15.07 5.20 5.20 Total: -1.00 -30.06 345.37 -7.16 -37.22 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.52 Total: 1.80 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.09 Total: -17.25 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.77 Total: -24.17 kcal Atomic # 8 Polarization: -18.61 SS G_CDS: -0.67 Total: -19.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.86 Total: 16.48 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.06 -7.16 -37.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838043589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.203 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds