Wall clock time and date at job start Tue Mar 31 2020 05:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50694 * 109.47480 * 2 1 4 4 C 1.50709 * 119.99775 * 274.99848 * 3 2 1 5 5 C 1.33081 * 120.00272 * 94.71897 * 3 2 1 6 6 C 1.46953 * 119.99765 * 185.50364 * 5 3 2 7 7 O 1.21529 * 120.00375 * 5.50251 * 6 5 3 8 8 O 1.34803 * 119.99563 * 185.49458 * 6 5 3 9 9 C 1.45202 * 116.99615 * 180.02562 * 8 6 5 10 10 C 1.50708 * 109.47004 * 180.02562 * 9 8 6 11 11 C 1.38299 * 119.93024 * 269.73273 * 10 9 8 12 12 C 1.38105 * 120.06709 * 179.72750 * 11 10 9 13 13 C 1.38884 * 119.92547 * 0.56504 * 12 11 10 14 14 O 1.35750 * 120.06222 * 179.69027 * 13 12 11 15 15 C 1.34832 * 116.99986 * 174.37714 * 14 13 12 16 16 H 1.08003 * 119.99428 * 5.05939 * 15 14 13 17 17 C 1.38647 * 120.00300 * 185.06311 * 15 14 13 18 18 N 1.31564 * 119.99918 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99889 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.47125 * 90.00090 * 19 17 15 21 21 H 1.48507 * 109.46784 * 209.99998 * 19 17 15 22 22 H 1.48495 * 109.47058 * 329.99440 * 19 17 15 23 23 C 1.38875 * 119.86655 * 359.70131 * 13 12 11 24 24 C 1.38102 * 119.92792 * 0.02562 * 23 13 12 25 25 H 1.09000 * 109.47311 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47151 * 300.00651 * 1 2 3 27 27 H 1.08999 * 109.46663 * 60.00087 * 1 2 3 28 28 H 1.09001 * 109.47151 * 239.99349 * 2 1 3 29 29 H 1.09007 * 109.46547 * 119.99655 * 2 1 3 30 30 H 1.08997 * 109.46959 * 354.83503 * 4 3 2 31 31 H 1.08997 * 109.47153 * 114.83331 * 4 3 2 32 32 H 1.09001 * 109.46833 * 234.83770 * 4 3 2 33 33 H 1.07994 * 120.00037 * 5.51330 * 5 3 2 34 34 H 1.08998 * 109.47747 * 300.00476 * 9 8 6 35 35 H 1.09004 * 109.46890 * 60.00679 * 9 8 6 36 36 H 1.07997 * 119.96579 * 359.97068 * 11 10 9 37 37 H 1.07994 * 120.03689 * 180.27314 * 12 11 10 38 38 H 0.97001 * 119.99709 * 180.02562 * 18 17 15 39 39 H 1.07994 * 120.03690 * 179.97438 * 23 13 12 40 40 H 1.08000 * 119.96450 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.1764 2.1690 -1.3002 5 6 2.3437 2.0165 1.1486 6 6 2.7174 3.4376 1.1614 7 8 2.6461 4.0940 0.1411 8 8 3.1393 4.0132 2.3051 9 6 3.4912 5.4206 2.2438 10 6 3.9371 5.8867 3.6059 11 6 3.0120 6.3995 4.4968 12 6 3.4166 6.8222 5.7478 13 6 4.7560 6.7426 6.1063 14 8 5.1577 7.1631 7.3329 15 6 6.4484 6.9511 7.6603 16 1 7.1303 6.5411 6.9301 17 6 6.9001 7.2594 8.9344 18 7 8.1594 7.0520 9.2539 19 14 5.7204 7.9678 10.1976 20 1 5.0875 6.8612 10.9591 21 1 6.4662 8.8486 11.1321 22 1 4.6698 8.7570 9.5058 23 6 5.6834 6.2323 5.2074 24 6 5.2716 5.8060 3.9601 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.9605 1.4979 -2.1315 31 1 1.4775 3.0053 -1.3175 32 1 3.1954 2.5450 -1.3921 33 1 2.3217 1.4556 2.0711 34 1 4.3015 5.5618 1.5286 35 1 2.6229 5.9989 1.9279 36 1 1.9714 6.4659 4.2154 37 1 2.6930 7.2185 6.4447 38 1 8.4753 7.2674 10.1454 39 1 6.7256 6.1695 5.4832 40 1 5.9924 5.4094 3.2604 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838043589.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:24 Heat of formation + Delta-G solvation = -98.612096 kcal Electronic energy + Delta-G solvation = -21549.036534 eV Core-core repulsion = 18101.197249 eV Total energy + Delta-G solvation = -3447.839286 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49418 -40.89173 -38.83085 -37.86766 -36.69792 -34.51720 -32.43080 -31.92430 -31.78456 -29.18786 -27.87801 -26.40481 -25.04740 -23.78129 -22.70997 -22.04441 -19.89547 -19.58119 -19.16260 -18.71253 -17.41799 -17.25583 -16.61159 -16.17880 -15.82828 -15.76700 -15.60527 -15.35541 -15.07884 -14.59362 -14.38312 -14.29273 -14.12579 -13.90487 -13.73079 -13.40861 -13.12393 -13.09226 -12.71287 -12.64844 -12.52144 -12.35910 -12.27657 -11.96312 -11.77937 -11.65867 -11.31452 -11.12487 -10.92332 -10.23398 -9.88875 -9.16602 -8.52368 -6.25897 0.13288 0.37427 0.50081 1.31795 1.35345 1.51948 1.90895 1.94477 2.26914 2.75707 2.99530 3.11461 3.65708 3.79916 3.86798 3.88456 4.06409 4.13927 4.27107 4.28052 4.40785 4.43348 4.51561 4.63486 4.70208 4.74265 4.79329 4.87776 4.99975 5.09559 5.11872 5.15779 5.26876 5.31850 5.40871 5.48859 5.49156 5.61080 5.63242 5.73948 5.83880 6.14238 6.80448 6.81232 7.52549 8.58848 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.032084 B = 0.002501 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.487307 B =11192.777986 C =11320.237623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.003 4.003 4 C -0.124 4.124 5 C -0.232 4.232 6 C 0.487 3.513 7 O -0.536 6.536 8 O -0.361 6.361 9 C 0.129 3.871 10 C -0.174 4.174 11 C -0.043 4.043 12 C -0.192 4.192 13 C 0.132 3.868 14 O -0.239 6.239 15 C -0.402 4.402 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.971 3.029 20 H -0.265 1.265 21 H -0.267 1.267 22 H -0.261 1.261 23 C -0.239 4.239 24 C -0.049 4.049 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.059 0.941 28 H 0.097 0.903 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.150 0.850 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.156 0.844 37 H 0.137 0.863 38 H 0.286 0.714 39 H 0.114 0.886 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.653 -12.228 -18.717 27.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.133 4.133 3 C -0.003 4.003 4 C -0.180 4.180 5 C -0.251 4.251 6 C 0.336 3.664 7 O -0.430 6.430 8 O -0.278 6.278 9 C 0.057 3.943 10 C -0.174 4.174 11 C -0.061 4.061 12 C -0.211 4.211 13 C 0.083 3.917 14 O -0.145 6.145 15 C -0.479 4.479 16 H 0.100 0.900 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.793 3.207 20 H -0.190 1.190 21 H -0.192 1.192 22 H -0.186 1.186 23 C -0.258 4.258 24 C -0.067 4.067 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.116 0.884 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.168 0.832 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.173 0.827 37 H 0.154 0.846 38 H 0.095 0.905 39 H 0.131 0.869 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.605 -11.872 -18.651 27.061 hybrid contribution 0.629 0.588 0.798 1.174 sum -14.975 -11.284 -17.853 25.891 Atomic orbital electron populations 1.21730 0.93193 1.03208 1.02291 1.20890 0.97115 0.90205 1.05066 1.23022 0.86368 0.96688 0.94265 1.21120 1.02719 0.99974 0.94193 1.21865 1.11593 0.90407 1.01189 1.22033 0.73641 0.90070 0.80655 1.90807 1.51918 1.66103 1.34130 1.86712 1.76228 1.27980 1.36889 1.21641 1.00974 0.77687 0.94034 1.19322 0.93532 1.07657 0.96925 1.20966 0.99947 0.94324 0.90874 1.20522 0.92279 1.09185 0.99110 1.19729 0.94347 0.92647 0.85015 1.83523 1.28860 1.72060 1.30104 1.20728 0.82805 1.44618 0.99701 0.89978 1.25308 0.97887 0.96798 0.98801 1.69731 1.15670 1.47969 1.22671 0.85205 0.78564 0.79075 0.77817 1.18997 1.19182 1.18560 1.21266 1.00017 1.08591 0.95962 1.20933 0.95944 0.95310 0.94511 0.90314 0.92957 0.92217 0.88438 0.89429 0.89851 0.90699 0.91582 0.83224 0.90385 0.89478 0.82684 0.84557 0.90462 0.86850 0.84743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.89 71.98 0.71 -0.47 16 2 C -0.10 -0.84 6.04 29.85 0.18 -0.66 16 3 C 0.00 -0.04 5.37 -17.60 -0.09 -0.13 16 4 C -0.12 -1.95 8.34 71.24 0.59 -1.36 16 5 C -0.23 -4.45 9.75 23.40 0.23 -4.22 16 6 C 0.49 12.51 7.84 70.10 0.55 13.06 16 7 O -0.54 -15.22 12.98 19.74 0.26 -14.96 16 8 O -0.36 -10.20 10.22 -57.15 -0.58 -10.79 16 9 C 0.13 3.49 5.60 71.24 0.40 3.89 16 10 C -0.17 -5.51 5.52 -19.83 -0.11 -5.62 16 11 C -0.04 -1.35 9.69 22.25 0.22 -1.13 16 12 C -0.19 -7.23 9.99 22.39 0.22 -7.01 16 13 C 0.13 6.16 6.65 22.58 0.15 6.31 16 14 O -0.24 -12.84 8.59 -22.76 -0.20 -13.03 16 15 C -0.40 -23.58 9.95 67.92 0.68 -22.90 16 16 H 0.08 5.04 5.44 -2.91 -0.02 5.02 16 17 C 0.01 0.63 5.49 84.83 0.47 1.10 16 18 N -0.92 -54.67 13.96 21.61 0.30 -54.37 16 19 Si 0.97 44.96 28.62 68.60 1.96 46.93 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 22 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.24 -10.54 9.17 22.39 0.21 -10.34 16 24 C -0.05 -1.75 9.69 22.25 0.22 -1.53 16 25 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.57 8.11 -2.39 -0.02 0.55 16 29 H 0.09 0.67 8.00 -2.38 -0.02 0.65 16 30 H 0.08 0.86 7.98 -2.39 -0.02 0.84 16 31 H 0.07 1.42 7.09 -2.39 -0.02 1.40 16 32 H 0.07 1.26 7.40 -2.39 -0.02 1.24 16 33 H 0.15 2.44 8.00 -2.91 -0.02 2.42 16 34 H 0.08 2.00 8.08 -2.39 -0.02 1.99 16 35 H 0.09 2.09 8.08 -2.38 -0.02 2.07 16 36 H 0.16 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.14 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.29 15.53 8.31 -92.71 -0.77 14.76 16 39 H 0.11 5.46 5.64 -2.91 -0.02 5.44 16 40 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -67.84 345.37 7.39 -60.45 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.04 Total: 16.80 kcal Atomic # 6 Polarization: -35.64 SS G_CDS: 4.61 Total: -31.03 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: 0.30 Total: -54.37 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.52 Total: -38.78 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 1.96 Total: 46.93 kcal Total: -67.84 7.39 -60.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838043589.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.162 kcal (2) G-P(sol) polarization free energy of solvation -67.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds