Wall clock time and date at job start Tue Mar 31 2020 06:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99814 * 2 1 4 4 C 1.38757 * 120.05606 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94457 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.05355 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11256 * 359.74533 * 6 5 4 8 8 C 1.38168 * 120.05514 * 0.50467 * 7 6 5 9 9 C 1.50701 * 120.02956 * 179.76636 * 8 7 6 10 10 H 1.09002 * 115.55088 * 154.14351 * 9 8 7 11 11 C 1.53005 * 117.49691 * 8.47421 * 9 8 7 12 12 C 1.52999 * 59.99973 * 252.48494 * 11 9 8 13 13 H 1.08995 * 117.49529 * 107.48826 * 12 11 9 14 14 C 1.50693 * 117.50064 * 252.51042 * 12 11 9 15 15 O 1.20828 * 120.00278 * 68.62192 * 14 12 11 16 16 O 1.34229 * 120.00404 * 248.62463 * 14 12 11 17 17 C 1.45193 * 117.00648 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47398 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47432 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99350 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00275 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00111 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00108 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47018 * 89.99609 * 23 21 19 25 25 H 1.48492 * 109.47302 * 209.99704 * 23 21 19 26 26 H 1.48500 * 109.46910 * 329.99765 * 23 21 19 27 27 H 1.09001 * 109.47317 * 59.99783 * 1 2 3 28 28 H 1.08998 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46714 * 299.99663 * 1 2 3 30 30 H 1.07993 * 120.02993 * 359.95772 * 4 3 2 31 31 H 1.07995 * 119.97351 * 179.97438 * 5 4 3 32 32 H 1.08003 * 119.94423 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.97175 * 180.25546 * 7 6 5 34 34 H 1.09004 * 117.49602 * 359.97438 * 11 9 8 35 35 H 1.09004 * 117.49357 * 144.97176 * 11 9 8 36 36 H 1.09004 * 109.47132 * 300.00185 * 17 16 14 37 37 H 1.09002 * 109.46869 * 59.99927 * 17 16 14 38 38 H 1.08996 * 109.47519 * 300.00400 * 18 17 16 39 39 H 1.08996 * 109.46890 * 60.00565 * 18 17 16 40 40 H 0.96994 * 120.00299 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6759 0.0005 7 6 4.0560 2.5172 0.0048 8 6 3.4311 1.2849 -0.0010 9 6 4.2538 0.0222 -0.0017 10 1 3.7674 -0.8560 0.4230 11 6 5.7634 0.1625 0.2041 12 6 5.2097 -0.1981 -1.1758 13 1 5.2435 0.5702 -1.9481 14 6 5.4066 -1.6126 -1.6567 15 8 4.8198 -2.5212 -1.1180 16 8 6.2340 -1.8634 -2.6835 17 6 6.3756 -3.2493 -3.0927 18 6 7.3511 -3.3369 -4.2681 19 6 7.4976 -4.7753 -4.6933 20 1 6.9494 -5.5494 -4.1770 21 6 8.3306 -5.1027 -5.7420 22 7 8.4581 -6.3579 -6.1134 23 14 9.2783 -3.7636 -6.6354 24 1 10.5945 -3.5654 -5.9770 25 1 9.4877 -4.1648 -8.0497 26 1 8.5060 -2.4961 -6.5896 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2128 2.3204 0.0003 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6382 0.0014 33 1 5.1344 2.5753 0.0085 34 1 6.1615 1.1681 0.3396 35 1 6.2700 -0.6233 0.7645 36 1 6.7578 -3.8373 -2.2583 37 1 5.4043 -3.6392 -3.3973 38 1 6.9685 -2.7489 -5.1024 39 1 8.3224 -2.9469 -3.9640 40 1 9.0444 -6.5884 -6.8509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840669221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:28 Heat of formation + Delta-G solvation = -78.583473 kcal Electronic energy + Delta-G solvation = -21915.856073 eV Core-core repulsion = 18468.885294 eV Total energy + Delta-G solvation = -3446.970779 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78417 -39.98246 -38.07220 -36.93684 -35.72267 -33.28333 -31.17662 -30.68345 -30.41596 -27.55506 -26.04768 -24.32570 -23.90411 -22.28320 -20.95281 -20.61122 -19.93042 -18.49365 -17.64251 -16.87345 -16.35576 -16.06625 -16.00873 -15.90455 -15.75113 -14.75553 -14.52314 -14.18552 -14.01698 -13.50355 -13.36551 -13.10932 -12.72947 -12.46066 -12.29565 -12.13774 -11.69416 -11.50621 -11.40843 -11.25821 -11.16090 -11.00355 -10.68073 -10.63108 -10.47255 -9.95203 -9.88238 -9.66813 -9.33008 -9.08801 -8.60862 -8.36333 -6.11466 -4.12539 0.94712 1.14196 2.41012 3.02448 3.02886 3.29274 3.36374 3.38677 3.41474 3.84741 4.30545 4.40145 4.46790 4.60917 4.68841 4.72857 4.78968 4.87298 4.93578 5.08540 5.16433 5.22148 5.22477 5.23269 5.30975 5.52134 5.68217 5.81204 5.86434 6.00298 6.00796 6.03519 6.18135 6.28418 6.46818 6.48010 6.83441 7.12194 7.22233 7.24886 7.64233 8.20416 8.41471 8.90283 9.48191 11.01156 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.002833 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.882458 B = 9879.917705 C =10327.600854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.139 3.861 4 C -0.209 4.209 5 C -0.083 4.083 6 C -0.156 4.156 7 C -0.080 4.080 8 C -0.085 4.085 9 C -0.073 4.073 10 H 0.132 0.868 11 C -0.143 4.143 12 C -0.152 4.152 13 H 0.134 0.866 14 C 0.486 3.514 15 O -0.511 6.511 16 O -0.357 6.357 17 C 0.082 3.918 18 C -0.009 4.009 19 C -0.527 4.527 20 H 0.075 0.925 21 C 0.072 3.928 22 N -0.898 5.898 23 Si 0.881 3.119 24 H -0.275 1.275 25 H -0.286 1.286 26 H -0.263 1.263 27 H 0.055 0.945 28 H 0.101 0.899 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.028 0.972 39 H 0.024 0.976 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.705 22.226 14.706 29.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.221 6.221 3 C 0.094 3.906 4 C -0.227 4.227 5 C -0.101 4.101 6 C -0.174 4.174 7 C -0.098 4.098 8 C -0.086 4.086 9 C -0.091 4.091 10 H 0.150 0.850 11 C -0.180 4.180 12 C -0.171 4.171 13 H 0.152 0.848 14 C 0.329 3.671 15 O -0.401 6.401 16 O -0.273 6.273 17 C 0.010 3.990 18 C -0.047 4.047 19 C -0.565 4.565 20 H 0.093 0.907 21 C -0.130 4.130 22 N -0.536 5.536 23 Si 0.708 3.292 24 H -0.200 1.200 25 H -0.212 1.212 26 H -0.187 1.187 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.073 0.927 30 H 0.146 0.854 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.130 0.870 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.046 0.954 39 H 0.042 0.958 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.693 21.580 14.695 29.481 hybrid contribution 0.183 0.541 -0.653 0.868 sum -13.510 22.121 14.041 29.479 Atomic orbital electron populations 1.23090 0.78372 1.04249 1.01136 1.86170 1.21296 1.26426 1.88165 1.18823 0.91544 0.84505 0.95761 1.21230 1.00067 0.92276 1.09158 1.20948 0.94746 0.96918 0.97504 1.21031 0.93885 0.98328 1.04139 1.20952 1.00290 0.90898 0.97684 1.18455 0.90035 0.93912 1.06204 1.20939 0.90856 0.97596 0.99677 0.85048 1.23215 0.95656 1.03809 0.95325 1.21871 1.07515 0.93940 0.93803 0.84797 1.22358 0.76450 0.90236 0.78078 1.90640 1.46213 1.46875 1.56322 1.86466 1.59425 1.34614 1.46821 1.23392 1.01226 0.75780 0.98631 1.19625 0.94079 0.98648 0.92323 1.20851 1.27857 0.90733 1.17047 0.90652 1.24936 0.96152 0.95479 0.96462 1.69895 1.38259 1.16990 1.28429 0.86743 0.80681 0.82741 0.79010 1.20042 1.21185 1.18739 0.92629 0.88020 0.92715 0.85364 0.85817 0.85731 0.84954 0.87026 0.87401 0.91712 0.91697 0.95380 0.95785 0.92444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.58 9.68 -19.42 -0.19 -3.77 16 3 C 0.14 1.54 6.66 -39.21 -0.26 1.28 16 4 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 5 C -0.08 -0.65 10.04 -39.60 -0.40 -1.05 16 6 C -0.16 -1.23 10.04 -39.56 -0.40 -1.63 16 7 C -0.08 -0.72 9.30 -39.61 -0.37 -1.09 16 8 C -0.09 -0.94 5.62 -104.47 -0.59 -1.53 16 9 C -0.07 -0.89 5.26 -91.77 -0.48 -1.37 16 10 H 0.13 1.85 7.29 -51.93 -0.38 1.47 16 11 C -0.14 -1.49 9.56 -26.73 -0.26 -1.74 16 12 C -0.15 -2.02 5.94 -91.77 -0.54 -2.57 16 13 H 0.13 1.58 8.14 -51.93 -0.42 1.16 16 14 C 0.49 8.73 7.74 36.00 0.28 9.01 16 15 O -0.51 -10.46 16.01 -18.75 -0.30 -10.76 16 16 O -0.36 -7.13 10.22 -39.26 -0.40 -7.53 16 17 C 0.08 1.83 5.40 37.16 0.20 2.03 16 18 C -0.01 -0.23 4.42 -27.88 -0.12 -0.35 16 19 C -0.53 -15.23 9.66 -34.44 -0.33 -15.56 16 20 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 21 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 22 N -0.90 -27.65 13.96 55.43 0.77 -26.87 16 23 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 27 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 28 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 30 H 0.13 0.86 6.30 -52.49 -0.33 0.53 16 31 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 32 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 33 H 0.13 0.92 6.02 -52.49 -0.32 0.61 16 34 H 0.11 0.84 6.18 -51.93 -0.32 0.52 16 35 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.06 1.44 8.13 -51.93 -0.42 1.01 16 37 H 0.06 1.46 8.13 -51.93 -0.42 1.03 16 38 H 0.03 0.69 7.20 -51.93 -0.37 0.32 16 39 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 40 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -33.80 341.04 -7.83 -41.63 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: -5.45 Total: -1.25 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -2.73 Total: -13.57 kcal Atomic # 7 Polarization: -27.65 SS G_CDS: 0.77 Total: -26.87 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.89 Total: -22.06 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.80 -7.83 -41.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840669221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.952 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds