Wall clock time and date at job start Tue Mar 31 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35900 * 116.99814 * 2 1 4 4 C 1.38757 * 120.05606 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94457 * 179.97438 * 4 3 2 6 6 C 1.38293 * 120.05355 * 0.02562 * 5 4 3 7 7 C 1.38243 * 120.11256 * 359.74533 * 6 5 4 8 8 C 1.38168 * 120.05514 * 0.50467 * 7 6 5 9 9 C 1.50701 * 120.02956 * 179.76636 * 8 7 6 10 10 H 1.09002 * 115.55088 * 154.14351 * 9 8 7 11 11 C 1.53005 * 117.49691 * 8.47421 * 9 8 7 12 12 C 1.52999 * 59.99973 * 252.48494 * 11 9 8 13 13 H 1.08995 * 117.49529 * 107.48826 * 12 11 9 14 14 C 1.50693 * 117.50064 * 252.51042 * 12 11 9 15 15 O 1.20828 * 120.00278 * 68.62192 * 14 12 11 16 16 O 1.34229 * 120.00404 * 248.62463 * 14 12 11 17 17 C 1.45193 * 117.00648 * 179.97438 * 16 14 12 18 18 C 1.52996 * 109.47398 * 179.97438 * 17 16 14 19 19 C 1.50706 * 109.47432 * 180.02562 * 18 17 16 20 20 H 1.08004 * 119.99350 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00275 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00111 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00108 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47018 * 89.99609 * 23 21 19 25 25 H 1.48492 * 109.47302 * 209.99704 * 23 21 19 26 26 H 1.48500 * 109.46910 * 329.99765 * 23 21 19 27 27 H 1.09001 * 109.47317 * 59.99783 * 1 2 3 28 28 H 1.08998 * 109.46924 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46714 * 299.99663 * 1 2 3 30 30 H 1.07993 * 120.02993 * 359.95772 * 4 3 2 31 31 H 1.07995 * 119.97351 * 179.97438 * 5 4 3 32 32 H 1.08003 * 119.94423 * 180.02562 * 6 5 4 33 33 H 1.08000 * 119.97175 * 180.25546 * 7 6 5 34 34 H 1.09004 * 117.49602 * 359.97438 * 11 9 8 35 35 H 1.09004 * 117.49357 * 144.97176 * 11 9 8 36 36 H 1.09004 * 109.47132 * 300.00185 * 17 16 14 37 37 H 1.09002 * 109.46869 * 59.99927 * 17 16 14 38 38 H 1.08996 * 109.47519 * 300.00400 * 18 17 16 39 39 H 1.08996 * 109.46890 * 60.00565 * 18 17 16 40 40 H 0.96994 * 120.00299 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6759 0.0005 7 6 4.0560 2.5172 0.0048 8 6 3.4311 1.2849 -0.0010 9 6 4.2538 0.0222 -0.0017 10 1 3.7674 -0.8560 0.4230 11 6 5.7634 0.1625 0.2041 12 6 5.2097 -0.1981 -1.1758 13 1 5.2435 0.5702 -1.9481 14 6 5.4066 -1.6126 -1.6567 15 8 4.8198 -2.5212 -1.1180 16 8 6.2340 -1.8634 -2.6835 17 6 6.3756 -3.2493 -3.0927 18 6 7.3511 -3.3369 -4.2681 19 6 7.4976 -4.7753 -4.6933 20 1 6.9494 -5.5494 -4.1770 21 6 8.3306 -5.1027 -5.7420 22 7 8.4581 -6.3579 -6.1134 23 14 9.2783 -3.7636 -6.6354 24 1 10.5945 -3.5654 -5.9770 25 1 9.4877 -4.1648 -8.0497 26 1 8.5060 -2.4961 -6.5896 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 0.2128 2.3204 0.0003 31 1 1.3339 4.5114 0.0011 32 1 3.7922 4.6382 0.0014 33 1 5.1344 2.5753 0.0085 34 1 6.1615 1.1681 0.3396 35 1 6.2700 -0.6233 0.7645 36 1 6.7578 -3.8373 -2.2583 37 1 5.4043 -3.6392 -3.3973 38 1 6.9685 -2.7489 -5.1024 39 1 8.3224 -2.9469 -3.9640 40 1 9.0444 -6.5884 -6.8509 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840669221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:27 Heat of formation + Delta-G solvation = -98.013778 kcal Electronic energy + Delta-G solvation = -21916.698634 eV Core-core repulsion = 18468.885294 eV Total energy + Delta-G solvation = -3447.813341 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.82210 -41.10073 -38.98046 -37.99955 -37.04226 -35.41374 -32.84475 -31.78355 -31.04017 -28.19787 -27.73814 -25.68682 -24.81660 -22.95138 -22.65561 -21.86121 -21.08009 -19.43301 -19.07303 -18.50501 -17.68130 -17.52724 -16.98224 -16.67011 -16.64049 -16.30086 -15.45498 -15.31887 -15.16718 -14.92480 -14.66571 -14.40701 -13.75711 -13.69634 -13.37972 -13.15180 -13.02457 -12.86959 -12.51495 -12.50455 -12.33866 -12.02963 -11.94539 -11.82896 -11.76687 -11.59966 -11.51885 -11.48272 -11.38748 -10.82606 -9.74987 -9.06038 -8.35841 -6.44577 0.28188 0.49574 1.03820 1.37605 1.39593 1.52542 1.63341 2.33749 2.40560 2.58612 2.98790 2.99048 3.45949 3.54730 3.73950 3.87494 4.02606 4.10140 4.12784 4.16505 4.18256 4.29206 4.35699 4.44479 4.54025 4.58220 4.66842 4.69454 4.72799 4.87997 5.01808 5.06441 5.10598 5.25746 5.40510 5.47547 5.51516 5.53528 5.61540 5.89016 6.13749 6.46759 6.61129 6.68916 7.20617 8.80381 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.025176 B = 0.002833 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.882458 B = 9879.917705 C =10327.600854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.113 3.887 4 C -0.214 4.214 5 C -0.083 4.083 6 C -0.156 4.156 7 C -0.081 4.081 8 C -0.109 4.109 9 C -0.072 4.072 10 H 0.102 0.898 11 C -0.117 4.117 12 C -0.165 4.165 13 H 0.154 0.846 14 C 0.482 3.518 15 O -0.544 6.544 16 O -0.356 6.356 17 C 0.092 3.908 18 C -0.002 4.002 19 C -0.545 4.545 20 H 0.034 0.966 21 C 0.012 3.988 22 N -0.944 5.944 23 Si 0.956 3.044 24 H -0.261 1.261 25 H -0.279 1.279 26 H -0.245 1.245 27 H 0.064 0.936 28 H 0.106 0.894 29 H 0.070 0.930 30 H 0.145 0.855 31 H 0.151 0.849 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.151 0.849 35 H 0.104 0.896 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.036 0.964 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.129 26.467 14.866 33.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.068 3.932 4 C -0.233 4.233 5 C -0.101 4.101 6 C -0.174 4.174 7 C -0.099 4.099 8 C -0.110 4.110 9 C -0.090 4.090 10 H 0.120 0.880 11 C -0.153 4.153 12 C -0.183 4.183 13 H 0.172 0.828 14 C 0.327 3.673 15 O -0.435 6.435 16 O -0.273 6.273 17 C 0.019 3.981 18 C -0.039 4.039 19 C -0.582 4.582 20 H 0.052 0.948 21 C -0.186 4.186 22 N -0.584 5.584 23 Si 0.778 3.222 24 H -0.186 1.186 25 H -0.205 1.205 26 H -0.168 1.168 27 H 0.083 0.917 28 H 0.125 0.875 29 H 0.089 0.911 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.170 0.830 33 H 0.171 0.829 34 H 0.168 0.832 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.136 25.837 14.877 32.580 hybrid contribution -0.125 -0.814 -0.609 1.024 sum -13.260 25.023 14.268 31.711 Atomic orbital electron populations 1.23294 0.76753 1.05066 1.02360 1.86119 1.23262 1.27527 1.88572 1.19166 0.92087 0.84983 0.96969 1.21488 1.00978 0.92030 1.08783 1.21358 0.95276 0.97418 0.96048 1.21413 0.94041 0.99116 1.02866 1.21216 1.01486 0.90255 0.96903 1.18555 0.90128 0.94036 1.08239 1.20803 0.92005 0.97541 0.98638 0.88032 1.23435 0.94253 1.05612 0.92037 1.21987 1.10011 0.90888 0.95445 0.82831 1.23366 0.75056 0.92049 0.76830 1.90628 1.47295 1.48457 1.57123 1.86456 1.60301 1.32613 1.47900 1.22973 1.00053 0.77353 0.97742 1.19457 0.95264 0.95922 0.93296 1.21110 1.27700 0.92175 1.17257 0.94801 1.25972 0.97155 0.98240 0.97270 1.70041 1.39396 1.19585 1.29359 0.85573 0.79414 0.79628 0.77575 1.18571 1.20490 1.16813 0.91695 0.87546 0.91096 0.83760 0.83137 0.83047 0.82863 0.83180 0.87735 0.92415 0.92797 0.94665 0.94518 0.91980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.19 9.68 -92.42 -0.89 -9.09 16 3 C 0.11 2.45 6.66 22.51 0.15 2.60 16 4 C -0.21 -3.41 9.04 22.37 0.20 -3.20 16 5 C -0.08 -1.03 10.04 22.26 0.22 -0.81 16 6 C -0.16 -1.89 10.04 22.28 0.22 -1.67 16 7 C -0.08 -1.20 9.30 22.25 0.21 -0.99 16 8 C -0.11 -2.28 5.62 -19.77 -0.11 -2.39 16 9 C -0.07 -1.72 5.26 -11.54 -0.06 -1.78 16 10 H 0.10 3.04 7.29 -2.39 -0.02 3.02 16 11 C -0.12 -2.18 9.56 30.60 0.29 -1.89 16 12 C -0.16 -4.18 5.94 -11.54 -0.07 -4.25 16 13 H 0.15 3.28 8.14 -2.39 -0.02 3.26 16 14 C 0.48 17.44 7.74 71.23 0.55 17.99 16 15 O -0.54 -23.14 16.01 21.96 0.35 -22.78 16 16 O -0.36 -14.13 10.22 -51.41 -0.53 -14.65 16 17 C 0.09 4.18 5.40 71.98 0.39 4.57 16 18 C 0.00 -0.10 4.42 29.85 0.13 0.04 16 19 C -0.54 -32.28 9.66 25.60 0.25 -32.04 16 20 H 0.03 2.21 7.99 -2.91 -0.02 2.19 16 21 C 0.01 0.69 5.47 84.65 0.46 1.15 16 22 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 23 Si 0.96 43.92 27.47 68.60 1.88 45.80 16 24 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 25 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 26 H -0.24 -10.46 6.54 99.48 0.65 -9.81 16 27 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 28 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 0.76 7.66 -2.38 -0.02 0.74 16 30 H 0.14 1.66 6.30 -2.91 -0.02 1.65 16 31 H 0.15 1.01 8.06 -2.91 -0.02 0.98 16 32 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 33 H 0.15 1.48 6.02 -2.91 -0.02 1.46 16 34 H 0.15 1.63 6.18 -2.39 -0.01 1.61 16 35 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 36 H 0.06 2.66 8.13 -2.38 -0.02 2.64 16 37 H 0.05 2.52 8.13 -2.39 -0.02 2.50 16 38 H 0.04 1.68 7.20 -2.39 -0.02 1.66 16 39 H 0.04 1.71 7.57 -2.39 -0.02 1.69 16 40 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -75.95 341.04 6.06 -69.89 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.99 Total: 11.24 kcal Atomic # 6 Polarization: -25.24 SS G_CDS: 3.95 Total: -21.28 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: 0.30 Total: -59.13 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -1.07 Total: -46.52 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.88 Total: 45.80 kcal Total: -75.95 6.06 -69.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840669221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.121 kcal (2) G-P(sol) polarization free energy of solvation -75.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds