Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46999 * 2 1 4 4 C 1.52998 * 109.46634 * 240.00642 * 2 1 3 5 5 C 1.50696 * 109.47778 * 65.00012 * 4 2 1 6 6 O 1.20835 * 119.99622 * 0.02562 * 5 4 2 7 7 O 1.34267 * 120.00504 * 179.97438 * 5 4 2 8 8 C 1.35917 * 117.00216 * 175.01282 * 7 5 4 9 9 C 1.38824 * 120.02026 * 255.02139 * 8 7 5 10 10 C 1.38192 * 120.07836 * 179.72225 * 9 8 7 11 11 C 1.38157 * 120.12633 * 0.54996 * 10 9 8 12 12 C 1.38894 * 120.03673 * 359.72308 * 11 10 9 13 13 O 1.35750 * 120.03798 * 179.97438 * 12 11 10 14 14 C 1.34823 * 117.00198 * 185.62265 * 13 12 11 15 15 H 1.08006 * 119.99763 * 354.93319 * 14 13 12 16 16 C 1.38656 * 120.00092 * 174.94243 * 14 13 12 17 17 N 1.31554 * 120.00043 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99792 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47341 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.46958 * 119.99727 * 18 16 14 21 21 H 1.48503 * 109.46768 * 239.99597 * 18 16 14 22 22 C 1.38573 * 120.02293 * 75.29247 * 8 7 5 23 23 C 1.52995 * 109.47181 * 120.00486 * 2 1 3 24 24 C 1.53000 * 117.49960 * 248.62122 * 23 2 1 25 25 C 1.52992 * 117.49869 * 179.97438 * 23 2 1 26 26 H 1.08999 * 109.47220 * 59.99248 * 1 2 3 27 27 H 1.09000 * 109.46825 * 299.99859 * 1 2 3 28 28 H 1.08994 * 109.47194 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.46624 * 185.00273 * 4 2 1 30 30 H 1.09008 * 109.47380 * 304.99449 * 4 2 1 31 31 H 1.08001 * 119.96025 * 359.97438 * 9 8 7 32 32 H 1.08007 * 119.93714 * 180.25864 * 10 9 8 33 33 H 1.07993 * 119.97944 * 179.70831 * 11 10 9 34 34 H 0.97000 * 119.99720 * 180.02562 * 17 16 14 35 35 H 1.08004 * 120.05909 * 359.97438 * 22 8 7 36 36 H 1.09005 * 115.54864 * 34.32617 * 23 2 1 37 37 H 1.09005 * 117.49566 * 359.97438 * 24 23 2 38 38 H 1.08995 * 117.49674 * 145.01872 * 24 23 2 39 39 H 1.09002 * 117.50007 * 214.97539 * 25 23 2 40 40 H 1.08999 * 117.50074 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6412 0.0572 -2.4766 6 8 1.0140 1.0838 -2.3636 7 8 1.9839 -0.3894 -3.6956 8 6 1.5051 0.3021 -4.7633 9 6 0.4627 -0.2191 -5.5175 10 6 -0.0289 0.4857 -6.5999 11 6 0.5228 1.7054 -6.9416 12 6 1.5696 2.2289 -6.1938 13 8 2.1120 3.4271 -6.5299 14 6 3.1986 3.8231 -5.8368 15 1 3.5497 3.2357 -5.0012 16 6 3.8650 4.9845 -6.1966 17 7 3.4375 5.6998 -7.2146 18 14 5.3700 5.5336 -5.2358 19 1 5.6426 4.5629 -4.1456 20 1 6.5417 5.5985 -6.1459 21 1 5.1218 6.8762 -4.6519 22 6 2.0609 1.5252 -5.1030 23 6 2.0400 -0.7213 1.2491 24 6 2.7419 0.1224 2.3151 25 6 3.5549 -0.8287 1.4338 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 3.1263 -0.7994 -1.2057 30 1 1.6053 -1.7198 -1.2953 31 1 0.0326 -1.1745 -5.2557 32 1 -0.8428 0.0800 -7.1826 33 1 0.1399 2.2519 -7.7907 34 1 3.9040 6.5121 -7.4665 35 1 2.8746 1.9303 -4.5197 36 1 1.4310 -1.5586 1.5901 37 1 2.8407 1.1914 2.1262 38 1 2.5947 -0.1596 3.3576 39 1 3.9425 -1.7362 1.8969 40 1 4.1883 -0.3851 0.6657 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841342846.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -63.222851 kcal Electronic energy + Delta-G solvation = -22582.574639 eV Core-core repulsion = 19136.269946 eV Total energy + Delta-G solvation = -3446.304693 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.96740 -39.01143 -38.29681 -36.95158 -35.71562 -33.36609 -32.31420 -29.93077 -29.01776 -28.16399 -25.43567 -24.13112 -22.76585 -22.42680 -21.65886 -20.57538 -19.75656 -18.28269 -17.87098 -17.00660 -16.26422 -15.83845 -15.73606 -15.14332 -14.71992 -14.59181 -14.31725 -13.88119 -13.64848 -13.41228 -13.17358 -12.99753 -12.65773 -12.31911 -11.87347 -11.80063 -11.58385 -11.53884 -11.37788 -11.27281 -11.05715 -11.02446 -10.85664 -10.47984 -10.46794 -10.32404 -10.20115 -10.10723 -9.52080 -8.88708 -8.16295 -7.35818 -6.49188 -4.08411 1.77827 2.20973 2.37136 3.06050 3.12110 3.13648 3.17973 3.56983 3.93790 4.38127 4.48225 4.55467 4.68004 4.81193 4.91854 5.03155 5.05766 5.18663 5.27422 5.32182 5.43228 5.46853 5.58360 5.61416 5.65710 5.77754 5.86230 5.89700 5.92077 6.00216 6.15982 6.17195 6.25022 6.38650 6.56013 6.91599 7.01439 7.09037 7.13571 7.32857 7.60072 7.94736 8.18706 8.96110 9.62597 10.68450 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.004523 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.630957 B = 6189.043414 C = 7868.613076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.051 4.051 3 H 0.082 0.918 4 C -0.105 4.105 5 C 0.451 3.549 6 O -0.481 6.481 7 O -0.299 6.299 8 C 0.121 3.879 9 C -0.213 4.213 10 C -0.065 4.065 11 C -0.188 4.188 12 C 0.164 3.836 13 O -0.171 6.171 14 C -0.393 4.393 15 H 0.091 0.909 16 C 0.042 3.958 17 N -0.860 5.860 18 Si 0.941 3.059 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.274 1.274 22 C -0.230 4.230 23 C -0.148 4.148 24 C -0.178 4.178 25 C -0.183 4.183 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.105 0.895 30 H 0.106 0.894 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.271 0.729 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.061 -13.691 14.009 19.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.069 4.069 3 H 0.101 0.899 4 C -0.142 4.142 5 C 0.294 3.706 6 O -0.366 6.366 7 O -0.214 6.214 8 C 0.081 3.919 9 C -0.232 4.232 10 C -0.083 4.083 11 C -0.207 4.207 12 C 0.110 3.890 13 O -0.074 6.074 14 C -0.469 4.469 15 H 0.109 0.891 16 C -0.163 4.163 17 N -0.494 5.494 18 Si 0.765 3.235 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.250 4.250 23 C -0.166 4.166 24 C -0.215 4.215 25 C -0.220 4.220 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.081 0.919 35 H 0.149 0.851 36 H 0.124 0.876 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.236 -12.943 13.742 19.010 hybrid contribution 0.841 0.294 0.501 1.022 sum -1.395 -12.649 14.243 19.100 Atomic orbital electron populations 1.21949 0.94010 1.01675 1.03372 1.20570 0.96839 0.99206 0.90302 0.89921 1.21459 1.04022 1.00004 0.88741 1.24060 0.77017 0.84814 0.84682 1.90697 1.36018 1.23478 1.86373 1.84512 1.67893 1.55007 1.14016 1.18214 0.95039 0.91979 0.86718 1.20495 0.99607 1.02207 1.00907 1.20486 0.98275 0.93688 0.95869 1.20330 1.00085 0.97653 1.02644 1.19119 0.92327 0.86021 0.91552 1.83994 1.40709 1.27486 1.55194 1.21368 1.03755 1.08865 1.12875 0.89141 1.25286 0.98949 0.95365 0.96712 1.70043 1.39313 1.14832 1.25220 0.85647 0.79807 0.78997 0.79010 1.19114 1.19971 1.19992 1.21199 1.05636 0.96045 1.02113 1.22337 0.94814 1.01995 0.97419 1.23023 1.04415 0.97872 0.96140 1.23000 0.93816 1.01824 1.03364 0.90609 0.92436 0.93017 0.87666 0.87622 0.86794 0.86008 0.85888 0.91949 0.85112 0.87568 0.88629 0.88876 0.88747 0.88567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.92 37.16 0.33 -1.34 16 2 C -0.05 -0.54 2.19 -90.62 -0.20 -0.74 16 3 H 0.08 1.03 7.71 -51.93 -0.40 0.63 16 4 C -0.10 -1.15 5.20 -27.89 -0.14 -1.29 16 5 C 0.45 7.34 7.54 36.00 0.27 7.61 16 6 O -0.48 -9.41 13.40 -18.76 -0.25 -9.66 16 7 O -0.30 -5.39 10.03 -23.60 -0.24 -5.63 16 8 C 0.12 2.50 5.19 -39.24 -0.20 2.29 16 9 C -0.21 -3.94 9.99 -39.38 -0.39 -4.34 16 10 C -0.06 -1.18 10.03 -39.63 -0.40 -1.57 16 11 C -0.19 -4.02 9.99 -39.37 -0.39 -4.41 16 12 C 0.16 4.11 6.64 -39.13 -0.26 3.85 16 13 O -0.17 -4.97 9.76 0.07 0.00 -4.97 16 14 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 15 H 0.09 2.46 5.20 -52.48 -0.27 2.19 16 16 C 0.04 1.16 5.49 -17.52 -0.10 1.06 16 17 N -0.86 -25.33 13.67 55.48 0.76 -24.57 16 18 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 19 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 C -0.23 -5.42 8.58 -39.25 -0.34 -5.76 16 23 C -0.15 -1.24 5.15 -90.63 -0.47 -1.70 16 24 C -0.18 -1.44 10.18 -26.71 -0.27 -1.71 16 25 C -0.18 -1.43 9.67 -26.71 -0.26 -1.69 16 26 H 0.08 1.05 5.96 -51.93 -0.31 0.74 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.11 1.00 7.12 -51.93 -0.37 0.63 16 30 H 0.11 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.12 1.73 8.06 -52.48 -0.42 1.31 16 33 H 0.12 2.47 8.06 -52.49 -0.42 2.04 16 34 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.13 3.18 5.64 -52.48 -0.30 2.89 16 36 H 0.11 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.10 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.10 0.79 7.58 -51.93 -0.39 0.40 16 LS Contribution 340.54 15.07 5.13 5.13 Total: -1.00 -32.33 340.54 -7.54 -39.88 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -5.40 Total: 4.66 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -2.53 Total: -20.71 kcal Atomic # 7 Polarization: -25.33 SS G_CDS: 0.76 Total: -24.57 kcal Atomic # 8 Polarization: -19.77 SS G_CDS: -0.49 Total: -20.25 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.33 -7.54 -39.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841342846.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.347 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds